ABSTRACT
Impairment of the astrocytic glutamate transporter excitatory amino acid transporter 2 (EAAT2) is associated with neurological disorders such as Parkinson's disease (PD), Alzheimer's disease (AD), and manganism, a neurological disorder caused by overexposure to manganese (Mn) which shares the features of sporadic PD. Mechanisms of Mn-induced neurotoxicity include dysregulation of EAAT2 following activation of the transcription factor Yin Yang 1 (YY1) by transcriptional upregulation, but the posttranslational mechanisms by which YY1 is activated to repress EAAT2 remain to be elucidated. In the present study, we tested if Mn activates YY1 through posttranslational phosphorylation in cultured H4 human astrocytes, leading to EAAT2 repression. The results demonstrate that Mn exposure induced phosphorylation of YY1 at serine residues via kinases Aurora B kinase (AurkB) and Casein kinase II (CK2), leading to YY1 nuclear translocation, YY1/HDAC interactions, binding to the EAAT2 promoter, and consequent decreases in EAAT2 promoter activity and mRNA/protein levels. Although further studies are warranted to fully elucidate the mechanisms of Mn-induced YY1 phosphorylation and resultant EAAT2 impairment, our findings indicate that serine phosphorylation of YY1 via AurkB and CK2 is critical, at least in part, to its activation and transcriptional repression of EAAT2.
Subject(s)
Astrocytes/drug effects , Excitatory Amino Acid Transporter 2/metabolism , Gene Expression Regulation/drug effects , Manganese/pharmacology , YY1 Transcription Factor/metabolism , Amino Acid Sequence , Astrocytes/metabolism , Aurora Kinase B/genetics , Aurora Kinase B/metabolism , Cell Line , Checkpoint Kinase 2/genetics , Checkpoint Kinase 2/metabolism , Excitatory Amino Acid Transporter 2/genetics , Humans , Phosphorylation , Serine/chemistry , YY1 Transcription Factor/geneticsABSTRACT
In physiological and thermally-processed conditions, alanine and serine efficiently eliminate acrolein to generate two main adducts, 2-(5-formyl-3,6-dihydropyridin-1(2H)-yl) propanoic acid and 2-(5-formyl-3,6-dihydropyridin-1(2H)-yl)-3-hydroxypropanoic acid, with amounts of 81.6 ± 4.24 µg/kg and 23.72 ± 0.40 µg/kg in fried potato crisps, respectively. Adduct formation markedly decreased the cytotoxicity of acrolein against Caco-2, GES-1 and HUVEC cells. The cell viability of them remained approximately100% after incubation with 200 µmolL-1 adducts, while the IC50 values for acrolein in the three cells were 66, 54, and 16 µmolL-1 respectively. The adducts express the protective effects by tremendous reduction of cell apoptosis, reactive oxygen species (ROS) production, and DNA damage.
Subject(s)
Acrolein/chemistry , Acrolein/pharmacology , Alanine/chemistry , Serine/chemistry , Solanum tuberosum/chemistry , Apoptosis/drug effects , Caco-2 Cells , Cell Survival/drug effects , DNA Damage , Food-Processing Industry/methods , Humans , Inactivation, Metabolic , Reactive Oxygen Species/metabolismABSTRACT
In the present work, we performed a complementary quantum mechanical (QM) study to describe the mechanism by which deprotonated pralidoxime (2-PAM) could reactivate human (Homo sapiens sapiens) acetylcholinesterase (HssAChE) inhibited by the nerve agent VX. Such a reaction is proposed to occur in subsequent addition-elimination steps, starting with a nucleophile bimolecular substitution (SN2) mechanism through the formation of a trigonal bipyramidal transition state (TS). A near attack conformation (NAC), obtained in a former study using molecular mechanics (MM) calculations, was taken as a starting point for this project, where we described the possible formation of the TS. Together, this combined QM/MM study on AChE reactivation shows the feasibility of the reactivation occurring via attack of the deprotonated form of 2-PAM against the Ser203-VX adduct of HssAChE.
Subject(s)
Acetylcholinesterase/drug effects , Organothiophosphorus Compounds/pharmacology , Pralidoxime Compounds/pharmacology , Acetylcholinesterase/chemistry , Catalytic Domain , Humans , Molecular Conformation , Molecular Dynamics Simulation , Pralidoxime Compounds/chemistry , Protons , Quantum Theory , Serine/chemistryABSTRACT
Semaphorins (Semas) are a family of secreted and transmembrane proteins that play critical roles in development. Interestingly, several vertebrate transmembrane Sema classes are capable of producing functional soluble ectodomains. However, little is known of soluble Sema6 ectodomains in the nervous system. Herein, we show that the soluble Sema6A ectodomain, sSema6A, exhibits natural and protein kinase C (PKC)-induced release. We show that PKC mediates Sema6A phosphorylation at specific sites and while this phosphorylation is not the primary mechanism regulating sSema6A production, we found that the intracellular domain confers resistance to ectodomain release. Finally, sSema6A is functional as it promotes the cohesion of zebrafish early eye field explants. This suggests that in addition to its canonical contact-mediated functions, Sema6A may have regulated, long-range, forward-signaling capacity.
Subject(s)
Frontal Lobe/metabolism , Protein Kinase C/metabolism , Semaphorins/chemistry , Semaphorins/metabolism , Zebrafish/growth & development , Animals , Frontal Lobe/cytology , Gene Expression Regulation , HEK293 Cells , Humans , Mass Spectrometry , Mice , Phosphorylation , Protein Domains , Semaphorins/genetics , Serine/chemistry , Zebrafish/metabolism , Zebrafish Proteins/chemistry , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolismABSTRACT
Aberrant activation of ß-catenin-response transcription (CRT) is a well-recognized characteristic of colorectal and liver cancers and thus a potential therapeutic target for these malignancies. Broussonetia papyrifera (paper mulberry) has been used as a herbal medicine to treat various diseases. Using a sensitive cell-based screening system, we identified broussochalcone A (BCA), a prenylated chalcone isolated from Broussonetia papyrifera, as an antagonist of CRT. BCA accelerated the turnover of intracellular ß-catenin that was accompanied by its N-terminal phosphorylation at Ser33/37/Thr41 residues, marking it for ubiquitin-dependent proteasomal degradation. Pharmacological inhibition of glycogen synthase kinase-3ß could not abrogate BCA-mediated degradation of ß-catenin. BCA decreased the intracellular ß-catenin levels in colon and liver cancer cells with mutations in ß-catenin, adenomatous polyposis coli, and Axin. BCA repressed the expressions of cyclin D1, c-Myc, and Axin2, which are ß-catenin/T-cell factor-dependent genes, and thus decreased the viability of colon and liver cancer cell. Moreover, apoptosis was elicited by BCA, as indicated by the increase in the population of Annexin V-FITC positive cells and caspase-3/7 activities in colon and liver cancer cells. These findings indicate that BCA exerts its cytotoxic effects by promoting phosphorylation/ubiquitin-dependent degradation of ß-catenin and may potentially serve as a chemopreventive agent for colonrectal and liver cancers.
Subject(s)
Antineoplastic Agents/pharmacology , Chalcones/pharmacology , Resorcinols/pharmacology , beta Catenin/metabolism , Apoptosis/drug effects , Cell Line, Tumor , Cell Survival/drug effects , Down-Regulation/drug effects , Gene Expression Regulation, Neoplastic/drug effects , HEK293 Cells , Humans , Phosphorylation/drug effects , Proteasome Endopeptidase Complex/drug effects , Serine/chemistry , Threonine/chemistry , Wnt Signaling Pathway/drug effects , beta Catenin/chemistry , beta Catenin/geneticsABSTRACT
Co-amorphous systems are an attractive alternative for amorphous solid polymer dispersions in the formulation of poorly soluble drugs. Several studies have revealed that co-amorphous formulations can enhance the dissolution properties of poorly-soluble drugs and stabilize them in the amorphous form. However, the interplay between the drug dissolution rate, drug supersaturation and different co-formers on membrane permeability of the drug for co-amorphous formulations remains unexplored. By using side-by-side chambers, separated by a PAMPA (parallel artificial membrane permeability assay) membrane, we were able to simultaneously test dissolution and passive membrane permeability of the co-amorphous combinations (1:1â¯molar ratio) of a poorly soluble drug glibenclamide (GBC) in combination with two amino acids, either serine (SER) or arginine (ARG). In addition, a known passive permeability enhancer sodium lauryl sulfate (SLS) was included in the co-amorphous mixtures at two concentration levels. The mixtures were also characterized with respect to their solid-state properties and physical stability. It was found that GBC mixtures with ARG and SLS had superior dissolution and physical stability properties which was attributable to the strong intermolecular interactions formed between GBC and ARG. These formulations also had optimal permeability properties due to their high concentration gradient promoting permeation and possible permeation enhancing effect of the co-formers ARG and SLS. Thus, simultaneous testing of dissolution and permeation through a PAMPA membrane may represent a simple and inexpensive tool for screening the most promising amorphous formulations in further studies.
Subject(s)
Drug Compounding/methods , Drug Evaluation, Preclinical/methods , Drug Liberation , Glyburide/pharmacokinetics , Membranes, Artificial , Arginine/chemistry , Calorimetry, Differential Scanning , Chemistry, Pharmaceutical/methods , Drug Evaluation, Preclinical/economics , Drug Stability , Feasibility Studies , Glyburide/chemistry , Permeability , Polymers/chemistry , Serine/chemistry , Sodium Dodecyl Sulfate/chemistry , Solubility , X-Ray DiffractionABSTRACT
Serine deficiency has been observed in patients with nonalcoholic fatty liver disease (NAFLD). Whether serine supplementation has any beneficial effects on the prevention of NAFLD remains unknown. The present study was conducted to investigate the effects of serine supplementation on hepatic oxidative stress and steatosis and its related mechanisms. Forty male C57BL/6J mice (9week-old) were randomly assigned into four groups (n=10) and fed: i) a low-fat diet; ii) a low-fat diet supplemented with 1% (wt:vol) serine; iii) a high-fat (HF) diet; and iv) a HF diet supplemented with 1% serine, respectively. Palmitic acid (PA)-treated primary hepatocytes separated from adult mice were also used to study the effects of serine on oxidative stress. The results showed that serine supplementation increased glucose tolerance and insulin sensitivity, and protected mice from hepatic lipid accumulation, but did not significantly decreased HF diet-induced weight gain. In addition, serine supplementation protected glutathione (GSH) antioxidant system and prevented hypermethylation in the promoters of glutathione synthesis-related genes, while decreasing reactive oxygen species (ROS) in mice fed a HF diet. Moreover, we found that serine supplementation increased phosphorylation and S-glutathionylation of AMP-activated protein kinase α subunit (AMPKα), and decreased ROS, malondialdehyde and triglyceride contents in PA-treated primary hepatocytes. However, while AMPK activity or GSH synthesis was inhibited, the abovementioned effects of serine on PA-treated primary hepatocytes were not observed. Our results suggest that serine supplementation could prevent HF diet-induced oxidative stress and steatosis by epigenetically modulating the expression of glutathione synthesis-related genes and through AMPK activation.
Subject(s)
AMP-Activated Protein Kinases/metabolism , Epigenesis, Genetic , Glutathione/metabolism , Hepatocytes/metabolism , Serine/chemistry , Animals , Antioxidants/metabolism , DNA Methylation , Diet, High-Fat/adverse effects , Dietary Fats/metabolism , Dietary Supplements , Glucose Tolerance Test , Hepatocytes/cytology , Insulin/metabolism , Lipids/blood , Liver/metabolism , Male , Mice , Mice, Inbred C57BL , Non-alcoholic Fatty Liver Disease/metabolism , Oxidative Stress , Reactive Oxygen Species/metabolism , Triglycerides/metabolismABSTRACT
The folate-driven one-carbon (1C) cycle is a fundamental metabolic hub in cells that enables the synthesis of nucleotides and amino acids and epigenetic modifications. This cycle might also release formaldehyde, a potent protein and DNA crosslinking agent that organisms produce in substantial quantities. Here we show that supplementation with tetrahydrofolate, the essential cofactor of this cycle, and other oxidation-prone folate derivatives kills human, mouse and chicken cells that cannot detoxify formaldehyde or that lack DNA crosslink repair. Notably, formaldehyde is generated from oxidative decomposition of the folate backbone. Furthermore, we find that formaldehyde detoxification in human cells generates formate, and thereby promotes nucleotide synthesis. This supply of 1C units is sufficient to sustain the growth of cells that are unable to use serine, which is the predominant source of 1C units. These findings identify an unexpected source of formaldehyde and, more generally, indicate that the detoxification of this ubiquitous endogenous genotoxin creates a benign 1C unit that can sustain essential metabolism.
Subject(s)
Carbon/metabolism , Folic Acid/chemistry , Folic Acid/metabolism , Formaldehyde/chemistry , Formaldehyde/metabolism , Metabolic Networks and Pathways , Mutagens/chemistry , Mutagens/metabolism , Alcohol Dehydrogenase/metabolism , Animals , Carbon/deficiency , Cell Line , Chickens , Coenzymes/metabolism , Cross-Linking Reagents/metabolism , DNA Damage , DNA Repair , Humans , Inactivation, Metabolic , Mice , Nucleotides/biosynthesis , Oxidation-Reduction , Serine/chemistry , Serine/metabolism , Tetrahydrofolates/metabolismABSTRACT
Glycerophosphodiesterase (GpdQ) from Enterobacter aerogenes is a binuclear metallohydrolase with a high affinity for metal ions at its α site but a lower affinity at its ß site in the absence of a substrate. Isothermal titration calorimetry (ITC) has been used to quantify the Co(II) and Mn(II) binding affinities and thermodynamics of the two sites in wild-type GpdQ and two mutants, both in the absence and in the presence of phosphate. Metal ions bind to the six-coordinate α site in an entropically driven process with loss of a proton, while binding at the ß site is not detected by ITC. Phosphate enhances the metal affinity of the α site by increasing the binding entropy and the metal affinity of the ß site by enthalpic (Co) or entropic (Mn) contributions, but no additional loss of protons. Mutations of first- and second-coordination sphere residues at the ß site increase the metal affinity of both sites by enhancing the binding enthalpy. In particular, loss of the hydrogen bond from second-sphere Ser127 to the metal-coordinating Asn80 has a significant effect on the metal binding thermodynamics that result in a resting binuclear active site with high catalytic activity. While structural and spectroscopic data with excess metal ions have indicated a bridging hydroxide in the binuclear GpdQ site, analysis of ITC data here reveals the loss of a single proton in the assembly of this site, indicating that the metal-bound hydroxide nucleophile is formed in the resting inactive mononuclear form, which becomes catalytically competent upon binding the second metal ion.
Subject(s)
Bacterial Proteins/metabolism , Cobalt/metabolism , Enterobacter aerogenes/enzymology , Manganese/metabolism , Phosphoric Diester Hydrolases/metabolism , Amino Acid Substitution , Asparagine/chemistry , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Binding Sites , Calorimetry , Catalytic Domain , Enzyme Activation , Hydrogen Bonding , Kinetics , Mutation , Phosphoric Diester Hydrolases/chemistry , Phosphoric Diester Hydrolases/genetics , Phosphorus/chemistry , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Serine/chemistry , Thermodynamics , TitrimetryABSTRACT
BACKGROUND: Rates of osteoporosis are significantly lower in regions of the world where olive oil consumption is a dietary cornerstone. Olive oil may represent a source of oleoyl serine (OS), which showed efficacy in animal models of osteoporosis. Here, we tested the hypothesis that OS as well as structurally analogous N-acyl amide and 2-acyl glycerol lipids are present in the following cooking oils: olive, walnut, canola, high heat canola, peanut, safflower, sesame, toasted sesame, grape seed, and smart balance omega. METHODS: Methanolic lipid extracts from each of the cooking oils were partially purified on C-18 solid-phase extraction columns. Extracts were analyzed with high-performance liquid chromatography-tandem mass spectrometry, and 33 lipids were measured in each sample, including OS and bioactive analogs. RESULTS: Of the oils screened here, walnut oil had the highest number of lipids detected (22/33). Olive oil had the second highest number of lipids detected (20/33), whereas grape-seed and high-heat canola oil were tied for lowest number of detected lipids (6/33). OS was detected in 8 of the 10 oils tested and the levels were highest in olive oil, suggesting that there is something about the olive plant that enriches this lipid. CONCLUSIONS: Cooking oils contain varying levels of bioactive lipids from the N-acyl amide and 2-acyl glycerol families. Olive oil is a dietary source of OS, which may contribute to lowered prevalence of osteoporosis in countries with high consumption of this oil.
Subject(s)
Lipids/chemistry , Olive Oil/analysis , Olive Oil/chemistry , Plant Oils/analysis , Plant Oils/chemistry , Serine/chemistry , Animals , Cooking , Diet , Osteoporosis/prevention & control , Rapeseed Oil , Rats , Rats, WistarABSTRACT
Several integral membrane proteins exhibiting undecaprenyl-pyrophosphate (C55-PP) phosphatase activity were previously identified in Escherichia coli that belonged to two distinct protein families: the BacA protein, which accounts for 75% of the C55-PP phosphatase activity detected in E. coli cell membranes, and three members of the PAP2 phosphatidic acid phosphatase family, namely PgpB, YbjG and LpxT. This dephosphorylation step is required to provide the C55-P carrier lipid which plays a central role in the biosynthesis of various cell wall polymers. We here report detailed investigations of the biochemical properties and membrane topology of the BacA protein. Optimal activity conditions were determined and a narrow-range substrate specificity with a clear preference for C55-PP was observed for this enzyme. Alignments of BacA protein sequences revealed two particularly well-conserved regions and several invariant residues whose role in enzyme activity was questioned by using a site-directed mutagenesis approach and complementary in vitro and in vivo activity assays. Three essential residues Glu21, Ser27, and Arg174 were identified, allowing us to propose a catalytic mechanism for this enzyme. The membrane topology of the BacA protein determined here experimentally did not validate previous program-based predicted models. It comprises seven transmembrane segments and contains in particular two large periplasmic loops carrying the highly-conserved active site residues. Our data thus provide evidence that all the different E. coli C55-PP phosphatases identified to date (BacA and PAP2) catalyze the dephosphorylation of C55-PP molecules on the same (outer) side of the plasma membrane.
Subject(s)
Escherichia coli Proteins/metabolism , Escherichia coli/enzymology , Phosphoric Monoester Hydrolases/metabolism , Amino Acid Motifs , Amino Acid Sequence , Arginine/chemistry , Catalysis , Cell Membrane/metabolism , Genetic Complementation Test , Glutamine/chemistry , Lipids/chemistry , Membrane Proteins/metabolism , Molecular Sequence Data , Mutagenesis, Site-Directed , Phosphatidate Phosphatase/metabolism , Phosphorylation , Phosphotransferases (Phosphate Group Acceptor)/metabolism , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Serine/chemistry , Substrate SpecificityABSTRACT
A halotolerant cyanobacterium Aphanothece halophytica thrives in extreme salinity with accumulation of a potent osmoprotectant glycine betaine. Recently, this cyanobacterium was shown to accumulate sunscreen molecule mycosporine-2-glycine significantly at high salinity. In this study, we investigated effects of nitrate and amino acid provision on the accumulation of glycine betaine and mycosporine-2-glycine. With elevated nitrate concentrations at high salinity, intracellular levels of both metabolites were enhanced. Six-fold high nitrate concentration increased the relative amounts of glycine betaine and mycosporine-2-glycine to be 1.5 and 2.0 folds compared with control condition : Increased levels were time- and dose-dependent manner. Exogenous supply of glycine/serine at high salinity resulted in the similar trends as observed in excess nitrate experiment. Intracellular level of glycine betaine increased â¼1.6 folds with glycine/serine supplementation. These supplementations also caused the increased level of mycosporine-2-glycine, namely 1.4 and 2 folds by glycine and serine, respectively. The transcription of glycine betaine and mycosporine-2-glycine biosynthetic genes was strongly induced under high-nitrate-salt condition. These results suggest the dependence of glycine betaine and mycosporine-2-glycine productions on substrate availability, and the effect of nitrate was possibly associated with stimulation of osmoprotectant increment in this extremophile.
Subject(s)
Amino Acids/metabolism , Betaine/metabolism , Cyanobacteria/metabolism , Cyclohexanols/metabolism , Glycine/analogs & derivatives , Nitrates/metabolism , Salinity , Bacterial Proteins/genetics , Cyanobacteria/chemistry , Cyanobacteria/drug effects , Glycine/chemistry , Glycine/metabolism , Glycine/pharmacology , Salt Tolerance , Serine/chemistry , Serine/pharmacology , Stress, Physiological/geneticsABSTRACT
Protein phosphorylation events on serine, threonine, and tyrosine residues are the most pervasive protein covalent bond modifications in plant signaling. Both low and high throughput studies reveal the importance of phosphorylation in plant molecular biology. Although becoming more and more common, the proteome-wide screening on phosphorylation by experiments remains time consuming and costly. Therefore, in silico prediction methods are proposed as a complementary analysis tool to enhance the phosphorylation site identification, develop biological hypothesis, or help experimental design. These methods build statistical models based on the experimental data, and they do not have some of the technical-specific bias, which may have advantage in proteome-wide analysis. More importantly computational methods are very fast and cheap to run, which makes large-scale phosphorylation identifications very practical for any types of biological study. Thus, the phosphorylation prediction tools become more and more popular. In this chapter, we will focus on plant specific phosphorylation site prediction tools, with essential illustration of technical details and application guidelines. We will use Musite, PhosPhAt and PlantPhos as the representative tools. We will present the results on the prediction of the Arabidopsis protein phosphorylation events to give users a general idea of the performance range of the three tools, together with their strengths and limitations. We believe these prediction tools will contribute more and more to the plant phosphorylation research community.
Subject(s)
Computational Biology/methods , Plant Proteins/chemistry , Plant Proteins/metabolism , Plants/metabolism , Binding Sites , Computational Biology/economics , Databases, Protein , Internet , Machine Learning , Models, Statistical , Phosphorylation , Plants/chemistry , Serine/chemistry , Software , Threonine/chemistry , Tyrosine/chemistryABSTRACT
Threonine aldolases catalyze the pyridoxal phosphate (PLP) dependent cleavage of threonine into glycine and acetaldehyde and play a major role in the degradation of this amino acid. In nature, L- as well as D-specific enzymes have been identified, but the exact physiological function of D-threonine aldolases (DTAs) is still largely unknown. Both types of enantio-complementary enzymes have a considerable potential in biocatalysis for the stereospecific synthesis of various ß-hydroxy amino acids, which are valuable building blocks for the production of pharmaceuticals. While several structures of L-threonine aldolases (LTAs) have already been determined, no structure of a DTA is available to date. Here, we report on the determination of the crystal structure of the DTA from Alcaligenes xylosoxidans (AxDTA) at 1.5 Å resolution. Our results underline the close relationship of DTAs and alanine racemases and allow the identification of a metal binding site close to the PLP-cofactor in the active site of the enzyme which is consistent with the previous observation that divalent cations are essential for DTA activity. Modeling of AxDTA substrate complexes provides a rationale for this metal dependence and indicates that binding of the ß-hydroxy group of the substrate to the metal ion very likely activates this group and facilitates its deprotonation by His193. An equivalent involvement of a metal ion has been implicated in the mechanism of a serine dehydratase, which harbors a metal ion binding site in the vicinity of the PLP cofactor at the same position as in DTA. The structure of AxDTA is completely different to available structures of LTAs. The enantio-complementarity of DTAs and LTAs can be explained by an approximate mirror symmetry of crucial active site residues relative to the PLP-cofactor.
Subject(s)
Alcaligenes/enzymology , Aldehyde-Lyases/chemistry , Bacterial Proteins/chemistry , Acetaldehyde/metabolism , Alanine Racemase/chemistry , Alanine Racemase/genetics , Alcaligenes/genetics , Aldehyde-Lyases/genetics , Aldehyde-Lyases/isolation & purification , Aldehyde-Lyases/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Binding Sites , Catalysis , Catalytic Domain , Cloning, Molecular , Crystallization , Crystallography, X-Ray , Escherichia coli , Glycine/biosynthesis , Manganese/metabolism , Models, Molecular , Molecular Docking Simulation , Molecular Sequence Data , Multigene Family , Protein Conformation , Protein Structure, Tertiary , Protons , Pyridoxal Phosphate/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Serine/analogs & derivatives , Serine/chemistry , Serine/metabolism , Structure-Activity Relationship , Threonine/metabolismABSTRACT
Neuropathological cascades leading to reduced cholinergic transmission in Alzheimer's disease led to development of AChE-inhibitors. Although lethal dose of some inhibitors cause interruption with AChE mediated mechanism but reversible AChE inhibitors can assist in protection from inhibition of AChE and hence in an aim to probe potential molecules as anticholinesterase and as reactivators, computationally structure-based approach has been exploited in this work for designing new 2-amino-3-pyridoixime-dipeptides conjugates. We have combined MD simulations with flexible ligand docking approach to determine binding specificity of 2-amino-3-pyridoixime dipeptides towards AChE (PDB 2WHP). PAS residues are found to be responsible for oxime-dipeptides binding along with π-π interactions with Trp86 and Tyr286, hydrogen bonding with side chains of Asp74 and Tyr341 (Gscore -10.801 and MM-GBSA free energy -34.89 kcal/mol). The docking results depicted complementary multivalent interactions along with good binding affinity as predicted from MM-GBSA analysis. The 2-amino-3-pyridoxime-(Arg-Asn) AChE systems subjected to MD simulations under explicit solvent systems with NPT and NVT ensemble. MD simulations uncovered dynamic behavior of 2-amino-3-pyridoxime-(Arg-Asn) and exposed its mobile nature and competence to form strong long range-order contacts towards active site residues to approach inhibited serine residue and facilitated via large contribution from hydrogen bonding and water bridges along with slow and large movements of adjacent important residues. In an effort to evaluate the complete potential surface profile, 2-amino-3-pyridoxime induced reactivation pathway of sarin-serine adduct has been investigated by the DFT approach at the vacuum MO6/6-311G (d, p) level along with the Poisson-Boltzmann solvation model and found to be of relatively low energy barrier. The pKa evaluation has revealed the major deprotonated 2-amino-3-pyridoixime species having pKa of 6.47 and hence making 2-amino-3-pyridoxime-(Arg-Asn) potential anticholinesterase and reactivator for AChE under the physiological pH.
Subject(s)
Acetylcholinesterase/chemistry , Cholinesterase Inhibitors/chemistry , Cholinesterase Reactivators/chemistry , Dipeptides/chemistry , Oximes/chemistry , Acetylcholinesterase/metabolism , Algorithms , Binding Sites , Biocatalysis/drug effects , Catalytic Domain , Cholinesterase Inhibitors/metabolism , Cholinesterase Inhibitors/pharmacology , Cholinesterase Reactivators/metabolism , Cholinesterase Reactivators/pharmacology , Dipeptides/metabolism , Dipeptides/pharmacology , Hydrogen Bonding , Hydrophobic and Hydrophilic Interactions , Kinetics , Ligands , Molecular Docking Simulation , Molecular Structure , Oximes/metabolism , Oximes/pharmacology , Protein Binding , Protein Structure, Tertiary , Serine/chemistry , Serine/metabolismABSTRACT
BACKGROUND AND PURPOSE: The orexin system regulates a multitude of key physiological processes, particularly involving maintenance of metabolic homeostasis. Consequently, there is considerable potential for pharmaceutical development for the treatment of disorders from narcolepsy to metabolic syndrome. It acts through the hormonal activity of two endogenous peptides, orexin A binding to orexin receptors 1 and 2 (OX1 and OX2) with similar affinity, and orexin B binding to OX2 with higher affinity than OX1 receptors. We have previously revealed data differentiating orexin receptor subtypes with respect to their relative stability in forming orexin receptor-arrestin-ubiquitin complexes measured by BRET. Recycling and cellular signalling distinctions were also observed. Here, we have investigated, using BRET, the molecular determinants involved in providing OX2 receptors with greater ß-arrestin-ubiquitin complex stability. EXPERIMENTAL APPROACH: The contribution of the C-terminal tail of the OX receptors was investigated by bulk substitution and site-specific mutagenesis using BRET and inositol phosphate assays. KEY RESULTS: Replacement of the OX1 receptor C-terminus with that of the OX2 receptor did not result in the expected gain of function, indicating a role for intracellular domain configuration in addition to primary structure. Furthermore, two out of the three putative serine/threonine clusters in the C-terminus were found to be involved in OX2 receptor-ß-arrestin-ubiquitin complex formation. CONCLUSIONS AND IMPLICATIONS: This study provides fundamental insights into the molecular elements that influence receptor-arrestin-ubiquitin complex formation. Understanding how and why the orexin receptors can be functionally differentiated brings us closer to exploiting these receptors as drug targets.
Subject(s)
Arrestin/metabolism , Orexin Receptors/metabolism , Ubiquitin/metabolism , Amino Acid Sequence , Arrestin/genetics , DNA, Complementary/biosynthesis , DNA, Complementary/genetics , Glutamic Acid/metabolism , HEK293 Cells , Humans , Inositol Phosphates/metabolism , Intracellular Signaling Peptides and Proteins , Molecular Sequence Data , Mutagenesis , Neuropeptides , Orexin Receptors/genetics , Orexins , Serine/chemistry , Serine/metabolism , Threonine/chemistry , Threonine/metabolism , Ubiquitin/geneticsABSTRACT
Ringing the changes: Selenazolines have applications in medicinal chemistry, but their synthesis is challenging. We report a new convenient and less toxic route to these heterocycles that starts from commercially available selenocysteine. The new route depends on a heterocyclase enzyme that creates oxazolines and thiazolines from serines/threonines and cysteines.
Subject(s)
Multienzyme Complexes/metabolism , Selenium/chemistry , Amino Acid Sequence , Cysteine/chemistry , Cysteine/metabolism , Iodoacetamide/chemistry , Oxazoles/chemistry , Oxazoles/metabolism , Peptides, Cyclic/biosynthesis , Peptides, Cyclic/chemistry , Selenium/metabolism , Selenocysteine/chemistry , Selenocysteine/metabolism , Serine/chemistry , Serine/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Thiazoles/chemistry , Thiazoles/metabolism , Threonine/chemistry , Threonine/metabolismABSTRACT
In an in vivo dialysis experiment, the intra-medial frontal cortex infusion of a system A and Asc-1 transporter inhibitor, S-methyl-L-cysteine, caused a concentration-dependent increase in the dialysate contents of an endogenous coagonist for the N-methyl-D-aspartate (NMDA) type glutamate receptor, D-serine, in the cortical portion. These results suggest that these neutral amino acid transporters could control the extracellular D-serine signaling in the brain and be a target for the development of a novel threapy for neuropsychiatric disorders with an NMDA receptor dysfunction.
Subject(s)
Cysteine/analogs & derivatives , Frontal Lobe/metabolism , Serine/chemistry , Amino Acid Transport Systems, Neutral/metabolism , Amino Acids/metabolism , Animals , Cysteine/administration & dosage , Cysteine/pharmacology , Extracellular Fluid/metabolism , Frontal Lobe/drug effects , Infusions, Intraventricular , Male , Microdialysis/methods , Rats , Rats, WistarABSTRACT
Interstitial collagen mechanical and biological properties are altered by proteases that catalyze the hydrolysis of the collagen triple-helical structure. Collagenolysis is critical in development and homeostasis but also contributes to numerous pathologies. Mammalian collagenolytic enzymes include matrix metalloproteinases, cathepsin K, and neutrophil elastase, and a variety of invertebrates and pathogens possess collagenolytic enzymes. Components of the mechanism of action for the collagenolytic enzyme MMP-1 have been defined experimentally, and insights into other collagenolytic mechanisms have been provided. Ancillary biomolecules may modulate the action of collagenolytic enzymes.
Subject(s)
Cathepsin K/metabolism , Collagen/metabolism , Gene Expression Regulation, Enzymologic , Leukocyte Elastase/metabolism , Matrix Metalloproteinases/metabolism , Animals , Arthritis/metabolism , Binding Sites , Catalysis , Collagen/chemistry , Humans , Matrix Metalloproteinase 1/metabolism , Metabolism , Molecular Conformation , Neoplasms/metabolism , Protein Binding , Protein Structure, Tertiary , Serine/chemistry , Substrate SpecificityABSTRACT
This work studied the effect of supplementing commercially available amino acids in low-protein diets using different ratios of digestible (dig) glycine+serine:lysine (Gly+Ser:Lys) on performance, serum parameters, feathering, and litter characteristics of broiler chickens during the starter period. A total of one thousand fifty 1-d-old Cobb-Vantress male chicks were distributed in a completely randomized experimental design into 6 treatments with 5 replicates of 35 birds each. The treatments were as follows: T1, control diet based on corn and soybean meal formulated with 22% CP (dig Gly+Ser:Lys ratio of 147); T2, diet with a 2% CP reduction, supplemented with Val (dig Gly+Ser:Lys ratio of 137); T3, similar to T2 with the addition of Gly (dig Gly+Ser:Lys ratio of 147); T4, diet with a 3% CP reduction, supplemented with Val, Ile, and Arg (dig Gly+Ser:Lys ratio of 127); and T5 and T6, similar to T4 with the addition of Gly (dig Gly+Ser:Lys ratios of 137 and 147, respectively). At 7 and 21 d, broilers that had received diets with a 3% CP reduction (19% CP) and a Gly+Ser:Lys ratio that was equivalent to 127 had lower G:F (P < 0.05) and lower total protein and albumin serum concentrations (P < 0.05) than those broilers that received the control feed. However, these parameters were restored to the same level as the control diet with an increase in the dig Gly+Ser:Lys ratio from 127 to 137 and 147. Diets with a 3% CP reduction (19% CP) resulted in litter with reduced (P < 0.05) nitrogen content and lower ammonia emission than the litter of broilers receiving the control diet. The treatments did not influence (P > 0.05) the feather length or feathering scores at 21 or 28 d of age. The supplementation of essential amino acids while maintaining dig Gly+Ser:Lys ratios at and above 137 allowed for a reduction in the dietary CP of 3% without undermining the performance, feathering or serum parameters of early stage broilers.