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1.
Cell ; 161(7): 1619-32, 2015 Jun 18.
Article in English | MEDLINE | ID: mdl-26091039

ABSTRACT

The existence of extracellular phosphoproteins has been acknowledged for over a century. However, research in this area has been undeveloped largely because the kinases that phosphorylate secreted proteins have escaped identification. Fam20C is a kinase that phosphorylates S-x-E/pS motifs on proteins in milk and in the extracellular matrix of bones and teeth. Here, we show that Fam20C generates the majority of the extracellular phosphoproteome. Using CRISPR/Cas9 genome editing, mass spectrometry, and biochemistry, we identify more than 100 secreted phosphoproteins as genuine Fam20C substrates. Further, we show that Fam20C exhibits broader substrate specificity than previously appreciated. Functional annotations of Fam20C substrates suggest roles for the kinase beyond biomineralization, including lipid homeostasis, wound healing, and cell migration and adhesion. Our results establish Fam20C as the major secretory pathway protein kinase and serve as a foundation for new areas of investigation into the role of secreted protein phosphorylation in human biology and disease.


Subject(s)
Casein Kinase I/chemistry , Casein Kinase I/metabolism , Extracellular Matrix Proteins/chemistry , Extracellular Matrix Proteins/metabolism , Amino Acid Sequence , Blood Proteins/metabolism , Casein Kinase I/genetics , Cell Adhesion , Cell Movement , Cerebrospinal Fluid Proteins/metabolism , Extracellular Matrix Proteins/genetics , Gene Knockout Techniques , Gene Ontology , Humans , Molecular Sequence Data , Phosphoproteins/analysis , Secretory Pathway , Substrate Specificity
2.
Nature ; 580(7802): 235-238, 2020 04.
Article in English | MEDLINE | ID: mdl-32269345

ABSTRACT

The phylogenetic relationships between hominins of the Early Pleistocene epoch in Eurasia, such as Homo antecessor, and hominins that appear later in the fossil record during the Middle Pleistocene epoch, such as Homo sapiens, are highly debated1-5. For the oldest remains, the molecular study of these relationships is hindered by the degradation of ancient DNA. However, recent research has demonstrated that the analysis of ancient proteins can address this challenge6-8. Here we present the dental enamel proteomes of H. antecessor from Atapuerca (Spain)9,10 and Homo erectus from Dmanisi (Georgia)1, two key fossil assemblages that have a central role in models of Pleistocene hominin morphology, dispersal and divergence. We provide evidence that H. antecessor is a close sister lineage to subsequent Middle and Late Pleistocene hominins, including modern humans, Neanderthals and Denisovans. This placement implies that the modern-like face of H. antecessor-that is, similar to that of modern humans-may have a considerably deep ancestry in the genus Homo, and that the cranial morphology of Neanderthals represents a derived form. By recovering AMELY-specific peptide sequences, we also conclude that the H. antecessor molar fragment from Atapuerca that we analysed belonged to a male individual. Finally, these H. antecessor and H. erectus fossils preserve evidence of enamel proteome phosphorylation and proteolytic digestion that occurred in vivo during tooth formation. Our results provide important insights into the evolutionary relationships between H. antecessor and other hominin groups, and pave the way for future studies using enamel proteomes to investigate hominin biology across the existence of the genus Homo.


Subject(s)
Dental Enamel/chemistry , Dental Enamel/metabolism , Fossils , Hominidae , Proteome/analysis , Proteome/metabolism , Amino Acid Sequence , Animals , Georgia (Republic) , Humans , Male , Molar/chemistry , Molar/metabolism , Neanderthals , Phosphoproteins/analysis , Phosphoproteins/chemistry , Phosphoproteins/metabolism , Phosphorylation , Phylogeny , Proteome/chemistry , Spain
3.
Anal Chem ; 96(3): 1223-1231, 2024 01 23.
Article in English | MEDLINE | ID: mdl-38205554

ABSTRACT

Oral squamous cell carcinoma (OSCC) has become a global health problem due to its increasing incidence and high mortality rate. Early intervention through monitoring of the diagnostic biomarker levels during OSCC treatment is critical. Extracellular vesicles (EVs) are emerging surrogates in intercellular communication through transporting biomolecule cargo and have recently been identified as a potential source of biomarkers such as phosphoproteins for many diseases. Here, we developed a multiple reaction monitoring cubed (MRM3) method coupled with a novel sample preparation strategy, extracellular vesicles to phosphoproteins (EVTOP), to quantify phosphoproteins using a minimal amount of saliva (50 µL) samples from OSCC patients with high specificity and sensitivity. Our results established differential patterns in the phosphopeptide content of healthy, presurgery, and postsurgery OSCC patient groups. Notably, we discovered significantly increased salivary phosphorylated alpha-amylase (AMY) in the postsurgery group compared to the presurgery group. We hereby present the first targeted MS method with extremely high sensitivity for measuring endogenous phosphoproteins in human saliva EVs.


Subject(s)
Carcinoma, Squamous Cell , Extracellular Vesicles , Head and Neck Neoplasms , Mouth Neoplasms , Humans , Carcinoma, Squamous Cell/diagnosis , Biomarkers, Tumor/analysis , Saliva/chemistry , Mouth Neoplasms/diagnosis , Extracellular Vesicles/pathology , Squamous Cell Carcinoma of Head and Neck , Phosphoproteins/analysis
4.
Clin Chem Lab Med ; 62(6): 1206-1216, 2024 May 27.
Article in English | MEDLINE | ID: mdl-38253336

ABSTRACT

OBJECTIVES: Many reverse transcription polymerase chain reaction (RT-PCR) methods exist that can detect SARS-CoV-2 RNA in different matrices. RT-PCR is highly sensitive, although viral RNA may be detected long after active infection has taken place. SARS-CoV-2 proteins have shorter detection windows hence their detection might be more meaningful. Given salivary droplets represent a main source of transmission, we explored the detection of viral RNA and protein using four different detection platforms including SISCAPA peptide immunoaffinity liquid chromatography-mass spectrometry (SISCAPA-LC-MS) using polyclonal capture antibodies. METHODS: The SISCAPA-LC MS method was compared to RT-PCR, RT-loop-mediated isothermal amplification (RT-LAMP), and a lateral flow rapid antigen test (RAT) for the detection of virus material in the drool saliva of 102 patients hospitalised after infection with SARS-CoV-2. Cycle thresholds (Ct) of RT-PCR (E gene) were compared to RT-LAMP time-to-positive (TTP) (NE and Orf1a genes), RAT optical densitometry measurements (test line/control line ratio) and to SISCAPA-LC-MS for measurements of viral protein. RESULTS: SISCAPA-LC-MS showed low sensitivity (37.7 %) but high specificity (89.8 %). RAT showed lower sensitivity (24.5 %) and high specificity (100 %). RT-LAMP had high sensitivity (83.0 %) and specificity (100.0 %). At high initial viral RNA loads (<20 Ct), results obtained using SISCAPA-LC-MS correlated with RT-PCR (R2 0.57, p-value 0.002). CONCLUSIONS: Detection of SARS-CoV-2 nucleoprotein in saliva was less frequent than the detection of viral RNA. The SISCAPA-LC-MS method allowed processing of multiple samples in <150 min and was scalable, enabling high throughput.


Subject(s)
COVID-19 , Mass Spectrometry , Molecular Diagnostic Techniques , RNA, Viral , SARS-CoV-2 , Saliva , Humans , Saliva/virology , Saliva/chemistry , SARS-CoV-2/isolation & purification , SARS-CoV-2/immunology , SARS-CoV-2/genetics , COVID-19/diagnosis , COVID-19/virology , RNA, Viral/analysis , Mass Spectrometry/methods , Nucleic Acid Amplification Techniques/methods , Reverse Transcriptase Polymerase Chain Reaction/methods , Male , Sensitivity and Specificity , Female , Middle Aged , Phosphoproteins/analysis , Phosphoproteins/immunology , Coronavirus Nucleocapsid Proteins/analysis , Coronavirus Nucleocapsid Proteins/immunology , Antigens, Viral/analysis , Antigens, Viral/immunology , Adult , Chromatography, Liquid/methods
5.
J Am Chem Soc ; 143(30): 11544-11553, 2021 08 04.
Article in English | MEDLINE | ID: mdl-34288684

ABSTRACT

Exponential molecular amplification such as the polymerase chain reaction is a powerful tool that allows ultrasensitive biodetection. Here, we report a new exponential amplification strategy based on photoredox autocatalysis, where eosin Y, a photocatalyst, amplifies itself by activating a nonfluorescent eosin Y derivative (EYH3-) under green light. The deactivated photocatalyst is stable and rapidly activated under low-intensity light, making the eosin Y amplification suitable for resource-limited settings. Through steady-state kinetic studies and reaction modeling, we found that EYH3- is either oxidized to eosin Y via one-electron oxidation by triplet eosin Y and subsequent 1e-/H+ transfer, or activated by singlet oxygen with the risk of degradation. By reducing the rate of the EYH3- degradation, we successfully improved EYH3--to-eosin Y recovery, achieving efficient autocatalytic eosin Y amplification. Additionally, to demonstrate its flexibility in output signals, we coupled the eosin Y amplification with photoinduced chromogenic polymerization, enabling sensitive visual detection of analytes. Finally, we applied the exponential amplification methods in developing bioassays for detection of biomarkers including SARS-CoV-2 nucleocapsid protein, an antigen used in the diagnosis of COVID-19.


Subject(s)
Coronavirus Nucleocapsid Proteins/analysis , Eosine Yellowish-(YS)/analogs & derivatives , Spectrometry, Fluorescence/methods , 3,3'-Diaminobenzidine/chemistry , Biomarkers/chemistry , Catalysis/radiation effects , Eosine Yellowish-(YS)/chemical synthesis , Eosine Yellowish-(YS)/radiation effects , Fluorescence , Light , Limit of Detection , Oxidation-Reduction/radiation effects , Phosphoproteins/analysis , Polyethylene Glycols/chemistry , Polymerization , Proof of Concept Study , SARS-CoV-2/chemistry
6.
Anal Bioanal Chem ; 413(26): 6503-6511, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34427712

ABSTRACT

We describe a rapid liquid chromatography/tandem mass spectrometry (LC-MS/MS) method for the direct detection and quantitation of SARS-CoV-2 nucleoprotein in gargle solutions and saliva. The method is based on a multiple-reaction monitoring (MRM) mass spectrometry approach with a total cycle time of 5 min per analysis and allows the detection and accurate quantitation of SARS-CoV-2 nucleoprotein as low as 500 amol/µL. We improved the sample preparation protocol of our recent piloting SARS-CoV-2 LC-MS study regarding sensitivity, reproducibility, and compatibility with a complementary reverse transcriptase quantitative polymerase chain reaction (RT-qPCR) analysis of the same sample. The aim of this work is to promote diagnostic tools that allow identifying and monitoring SARS-CoV-2 infections by LC-MS/MS methods in a routine clinical environment.


Subject(s)
COVID-19 Testing/methods , COVID-19/diagnosis , SARS-CoV-2/isolation & purification , Saliva/virology , Tandem Mass Spectrometry/methods , COVID-19 Testing/economics , Chromatography, Liquid/economics , Chromatography, Liquid/methods , Coronavirus Nucleocapsid Proteins/analysis , Coronavirus Nucleocapsid Proteins/isolation & purification , Humans , Limit of Detection , Phosphoproteins/analysis , Phosphoproteins/isolation & purification , Reproducibility of Results , Specimen Handling , Tandem Mass Spectrometry/economics , Time Factors
7.
Proc Natl Acad Sci U S A ; 112(34): 10673-8, 2015 Aug 25.
Article in English | MEDLINE | ID: mdl-26261332

ABSTRACT

An unbiased phosphoproteomic method was used to identify biomaterial-associated changes in the phosphorylation patterns of macrophage-like cells. The phosphorylation differences between differentiated THP1 (dTHP1) cells treated for 10, 20, or 30 min with a vascular regenerative methacrylic acid (MAA) copolymer or a control methyl methacrylate (MM) copolymer were determined by MS. There were 1,470 peptides (corresponding to 729 proteins) that were differentially phosphorylated in dTHP1 cells treated with the two materials with a greater cellular response to MAA treatment. In addition to identifying pathways (such as integrin signaling and cytoskeletal arrangement) that are well known to change with cell-material interaction, previously unidentified pathways, such as apoptosis and mRNA splicing, were also discovered.


Subject(s)
Biocompatible Materials/pharmacology , Gene Expression Profiling , Macrophages/drug effects , Phosphoproteins/analysis , Polymethacrylic Acids/pharmacology , Protein Processing, Post-Translational/drug effects , Proteomics/methods , Adsorption , Apoptosis Regulatory Proteins/metabolism , Cell Adhesion Molecules/metabolism , Cell Line, Tumor , Cytoskeletal Proteins/metabolism , Humans , Intracellular Signaling Peptides and Proteins/metabolism , Macrophages/chemistry , Materials Testing , Membrane Proteins/metabolism , Methylmethacrylate , Neoplasm Proteins/metabolism , Phosphoprotein Phosphatases/metabolism , Phosphorylation , Protein Kinases/metabolism , Transcription Factors/metabolism
8.
Int J Mol Sci ; 19(8)2018 Aug 17.
Article in English | MEDLINE | ID: mdl-30126087

ABSTRACT

Vital pulp therapy (VPT) is to preserve the nerve and maintain healthy dental pulp tissue. Laser irradiation (LI) is beneficial for VPT. Understanding how LI affects dental pulp cells and tissues is necessary to elucidate the mechanism of reparative dentin and dentin regeneration. Here, we show how Er:YAG-LI and diode-LI modulated cell proliferation, apoptosis, gene expression, protease activation, and mineralization induction in dental pulp cells and tissues using cell culture, immunohistochemical, genetic, and protein analysis techniques. Both LIs promoted proliferation in porcine dental pulp-derived cell lines (PPU-7), although the cell growth rate between the LIs was different. In addition to proliferation, both LIs also caused apoptosis; however, the apoptotic index for Er:YAG-LI was higher than that for diode-LI. The mRNA level of odontoblastic gene markers-two dentin sialophosphoprotein splicing variants and matrix metalloprotease (MMP)20 were enhanced by diode-LI, whereas MMP2 was increased by Er:YAG-LI. Both LIs enhanced alkaline phosphatase activity, suggesting that they may help induce PPU-7 differentiation into odontoblast-like cells. In terms of mineralization induction, the LIs were not significantly different, although their cell reactivity was likely different. Both LIs activated four MMPs in porcine dental pulp tissues. We helped elucidate how reparative dentin is formed during laser treatments.


Subject(s)
Apoptosis/radiation effects , Cell Proliferation/radiation effects , Dental Pulp/radiation effects , Animals , Cell Differentiation/radiation effects , Cell Line , Dental Pulp/cytology , Dental Pulp/metabolism , Extracellular Matrix Proteins/analysis , Extracellular Matrix Proteins/genetics , Gene Expression Regulation/radiation effects , Lasers, Semiconductor , Low-Level Light Therapy , Matrix Metalloproteinase 20/analysis , Matrix Metalloproteinase 20/genetics , Odontoblasts/cytology , Odontoblasts/metabolism , Odontoblasts/radiation effects , Phosphoproteins/analysis , Phosphoproteins/genetics , Sialoglycoproteins/analysis , Sialoglycoproteins/genetics , Swine
9.
Anal Chem ; 88(10): 5058-64, 2016 05 17.
Article in English | MEDLINE | ID: mdl-27101427

ABSTRACT

In this study, we developed a Ti(IV) monolithic spin tip for phosphoproteome analysis of a minute amount of biological sample for the first time. The surface of polypropylene pipet tip was activated by the photoinitiator benzophenone under UV light radiation followed by polymerization of ethylene glycol methacrylate phosphate and bis-acrylamide in the tip to form a porous monolith with reactive phosphate groups. The as-prepared tips grafted with monolithic adsorbent were then chelated with titanium(IV) ion for phosphopeptide enrichment. It was found that the tips enabled fast and efficient capture of phosphopeptides from microscale complex samples. The monolithic tip was demonstrated to have a detection limit as low as 5 fmol ß-casein tryptic digest, along with an exceptionally high specificity to capture phosphopeptides from complex tryptic digest mixed with an unphosphorylated protein and a phosphorylated protein at a molar ratio up to 1000:1. When the tip was applied to enrich phosphopeptides from 5 µg of tryptic digest of complex HeLa cell proteins, 1185 high confidence of phosphorylated sites were successfully identified with the specificity as high as 92.5%. So far, this is the most sensitive phosphoproteomics analysis using a standard liquid chromatography-tandem mass spectrometry (LC-MS/MS) system for proteome-wide phosphorylation analysis in mammalian cells.


Subject(s)
Chromatography, Liquid/instrumentation , Phosphoproteins/analysis , Polypropylenes/chemistry , Proteome/analysis , Tandem Mass Spectrometry/instrumentation , Titanium/chemistry , Acrylamides/chemistry , Adsorption , Benzophenones/radiation effects , Caseins/analysis , Chromatography, Liquid/methods , HeLa Cells , Humans , Limit of Detection , Methacrylates/chemistry , Peptide Fragments/analysis , Phosphates/chemistry , Porosity , Proteomics , Tandem Mass Spectrometry/methods , Ultraviolet Rays
10.
Anal Chem ; 87(24): 12183-9, 2015 Dec 15.
Article in English | MEDLINE | ID: mdl-26558409

ABSTRACT

For the widely used "off-on" fluorescence (or phosphorescence) resonance energy transfer (FRET or PRET) system, the separation of donors and acceptors species was vital for enhancing the sensitivity. To date, separation of free donors from FRET/PRET inhibition systems was somewhat not convenient, whereas separation of the target-induced far-between acceptors has hardly been reported yet. We presented here a novel magnetic separation-assistant fluorescence resonance energy transfer (MS-FRET) inhibition strategy for highly sensitive detection of nucleolin using Cy5.5-AS1411 as the donor and Fe3O4-polypyrrole core-shell (Fe3O4@PPY) nanoparticles as the NIR quenching acceptor. Due to hydrophobic interaction and π-π stacking of AS1411 and PPY, Cy5.5-AS1411 was bound onto the surface of Fe3O4@PPY, resulting in 90% of fluorescence quenching of Cy5.5-AS1411. Owing to the much stronger specific interaction of AS1411 and nucleolin, the presence of nucleolin could take Cy5.5-AS1411 apart from Fe3O4@PPY and restore the fluorescence of Cy5.5-AS1411. The superparamagnetism of Fe3O4@PPY enabled all separations and fluorescence measurements complete in the same quartz cell, and thus allowed the convenient but accurate comparison of the sensitivity and fluorescence recovery in the cases of separation or nonseparation. Compared to nonseparation FRET inhibition, the separation of free Cy5.5-AS1411 from Cy5.5-AS1411-Fe3O4@PPY solution (the first magnetic separation, MS-1) had as high as 25-fold enhancement of the sensitivity, whereas further separation of the nucleolin-inducing far-between Fe3O4@PPY from the FRET inhibition solution (the second magnetic separation, MS-2) could further enhance the sensitivity to 35-fold. Finally, the MS-FRET inhibition assay displayed the linear range of 0.625-27.5 µg L(-1) (8.1-359 pM) and detection limit of 0.04 µg L(-1) (0.05 pM) of nucleolin. The fluorescence intensity recovery (the percentage ratio of the final restoring fluorescence intensity to the quenched fluorescence intensity of Cy5.5-AS1411 solution by 0.09 g L(-1) Fe3O4@PPY) was enhanced from 36% (for nonseparation) to 56% (for two magnetic separations). This is the first accurate evaluation for the effect of separating donor/acceptor species on the FRET inhibition assay.


Subject(s)
Fluorescence Resonance Energy Transfer , Magnetic Phenomena , Phosphoproteins/analysis , RNA-Binding Proteins/analysis , Carbocyanines/chemistry , Cell Line , Humans , MCF-7 Cells , Magnetite Nanoparticles/chemistry , Polymers/chemistry , Pyrroles/chemistry , Spectrometry, Fluorescence , Nucleolin
11.
Biomed Chromatogr ; 29(7): 981-9, 2015 Jul.
Article in English | MEDLINE | ID: mdl-25402016

ABSTRACT

Determination of the availability of phases for specific separations is an important task achieved by a separation chemist. This becomes vital when the complex samples like biofluids are dealt with in proteome science. The work presented here involves the synthesis and application of terpolymeric sorbent with different functionalizations adopted for the selective enrichment of biomolecules of interest from biological fluids. Synthesis of terpolymer was carried out by the radical polymerization of monomers: methyl acrylate, acrylic acid and vinyl acetate with diethylene glycol dimethacrylate as cross-linking agent, benzoyl peroxide as initiator and chloroform as a porogenic solvent. Characterization was done through Fourier transform infrared spectroscopy, scanning electron microscopy and nitrogen adsorption porosimetry. The polymer was further modified to immobilized metal ion affinity chromatographic material, with immobilized Fe(3+)/La(3+) ions that allowed phosphopeptide enrichment from tryptic digests of standard proteins as well as milk, egg yolk and human serum. Sensitivity of enrichment down to 50 fmol was achieved in the presence of complex protein background as bovine serum albumin. Hydrophobicity was introduced through octadecyl amine, which provides comparable results to ZipTip C18/C4 for desalting of complex mixtures of all caseins. Analysis of the enriched content was performed by Matrix Assisted Laser Desorption Ionization Mass Spectrometry (MALDI-MS).


Subject(s)
Chromatography, Affinity/methods , Peptide Fragments/analysis , Phosphoproteins/analysis , Polymers/chemistry , Proteomics/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Animals , Egg Yolk/chemistry , Milk/chemistry , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Phosphoproteins/chemistry , Phosphoproteins/metabolism , Trypsin/metabolism
12.
Fungal Genet Biol ; 72: 21-33, 2014 Nov.
Article in English | MEDLINE | ID: mdl-24881580

ABSTRACT

Improving cellulolytic enzyme production by plant biomass degrading fungi holds great potential in reducing costs associated with production of next-generation biofuels generated from lignocellulose. How fungi sense cellulosic materials and respond by secreting enzymes has mainly been examined by assessing function of transcriptional regulators and via transcriptional profiling. Here, we obtained global proteomic and phosphoproteomic profiles of the plant biomass degrading filamentous fungus Neurospora crassa grown on different carbon sources, i.e. sucrose, no carbon, and cellulose, by performing isobaric tags for relative and absolute quantification (iTRAQ)-based LC-MS/MS analyses. A comparison between proteomes and transcriptomes under identical carbon conditions suggests that extensive post-transcriptional regulation occurs in N. crassa in response to exposure to cellulosic material. Several hundred amino acid residues with differential phosphorylation levels on crystalline cellulose (Avicel) or carbon-free medium vs sucrose medium were identified, including phosphorylation sites in a major transcriptional activator for cellulase genes, CLR1, as well as a cellobionic acid transporter, CBT1. Mutation of phosphorylation sites on CLR1 did not have a major effect on transactivation of cellulase production, while mutation of phosphorylation sites in CBT1 increased its transporting capacity. Our data provides rich information at both the protein and phosphorylation levels of the early cellular responses to carbon starvation and cellulosic induction and aids in a greater understanding of the underlying post-transcriptional regulatory mechanisms in filamentous fungi.


Subject(s)
Carbon/metabolism , Cellulose/metabolism , Neurospora crassa/chemistry , Neurospora crassa/metabolism , Phosphoproteins/analysis , Proteome/analysis , Sucrose/metabolism , Chromatography, Liquid , Culture Media/chemistry , Fungal Proteins/analysis , Gene Expression Profiling , Gene Expression Regulation, Fungal , Phosphorylation , Protein Processing, Post-Translational , Tandem Mass Spectrometry
13.
J Periodontal Res ; 49(6): 703-10, 2014 Dec.
Article in English | MEDLINE | ID: mdl-24329962

ABSTRACT

BACKGROUND AND OBJECTIVE: Keratinization of the oral mucosa, such as the gingiva, has been shown to be important for periodontal health. Caspase-14 is a protease that plays a role in keratinization of the epidermis. The objective of this study was to investigate whether the expression of caspase-14 is intimately linked with keratinization and to examine the effect of the main component of green tea on the improvement of keratinization in rat oral mucosal preparations. MATERIAL AND METHODS: Histological and immunohistochemical analyses and quantitative mRNA measurements of caspase-14 and its substrate filaggrin were performed using different types of rat epithelial tissue and organotypic reconstruction culture models derived from epithelial cells and fibroblasts taken from the rat oral mucosa. RESULTS: In the skin, palate, buccal mucosa and esophagus, the degree of keratinization appeared to be associated with expression of cytokeratin 10. The relative protein and mRNA expression levels of caspase-14 and filaggrin were consistent with the degree of keratinization in the following order: skin > palate > buccal mucosa > esophagus. The culture models of palatal and buccal mucosa retained a stratified epithelial structure. Expression of caspase-14 appeared to be stronger in the palatal model than in the buccal model. Remarkably, epigallocatechin-3-gallate (EGCG) improved the localization of cytokeratins and increased the expression of caspase-14 and filaggrin. This expression was more intense in the palatal model than in the buccal model, indicating that both models maintain the intrinsic properties of keratinization of the mucosa from where the cultured cells were derived. CONCLUSIONS: These results suggest that keratinization is closely associated with expression of caspase-14 and filaggrin. Our reconstruction models are promising tools for drug evaluation and show that EGCG is beneficial for improving both keratinization and expression of the linked protease in the oral mucosa.


Subject(s)
Caspase 14/analysis , Intermediate Filament Proteins/analysis , Mouth Mucosa/chemistry , Phosphoproteins/analysis , Animals , Animals, Newborn , Caspase 14/drug effects , Catechin/analogs & derivatives , Catechin/pharmacology , Cell Culture Techniques , Epithelial Cells/chemistry , Epithelium/chemistry , Esophagus/cytology , Fibroblasts/chemistry , Filaggrin Proteins , Intermediate Filament Proteins/drug effects , Keratin-10/analysis , Keratin-10/drug effects , Keratins , Models, Animal , Palate/cytology , Protease Inhibitors/pharmacology , Rats , Rats, Wistar , Skin/cytology , Tissue Culture Techniques
14.
Eur J Oral Sci ; 122(6): 382-90, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25302926

ABSTRACT

Nuclear factor I-C (NFIC) has an important role in the development of murine dental roots, but its role in human root formation is unreported. We thus elucidated the regulatory role of NFIC in the differentiation of human stem cells from the apical papilla (hSCAPs). The first step for this was to determine the expression of NFIC in human teeth, and it was found that NFIC expression was restricted to the odontoblasts and preodontoblasts of the developing molars of humans and mice. NFIC was found to be expressed in odontoblast-like cells after the subcutaneous transplantation of hSCAPs. NFIC expression was concomitant with dentin sialophosphoprotein (DSPP) in the mineralization of hSCAPs. NFIC knockdown in hSCAPs significantly inhibited expression of DSPP and promoted that of dentin matrix protein 1 (DMP1), meanwhile upregulated the expression of TGF-ß1 and downregulated SMAD3 and SMAD4. NFIC expression was significantly upregulated after TGF-ß1 treatment in hSCAPs. NFIC knockdown prolonged G1 phase of the cell cycle, but had no effect on cell proliferation and migration. These results suggest that NFIC is involved in the development of human root dentin and the regulation of odontoblastic differentiation of hSCAPs. NFIC may participate in the DMP1-DSPP signaling pathway and comprises a complex signaling cycle with TGF-ß1.


Subject(s)
Dental Papilla/cytology , Molar/cytology , NFI Transcription Factors/analysis , Odontogenesis/physiology , Stem Cells/physiology , Animals , Calcification, Physiologic/physiology , Cell Culture Techniques , Cell Differentiation/physiology , Cell Movement/physiology , Cell Proliferation , Cells, Cultured , Extracellular Matrix Proteins/analysis , G1 Phase , Gene Knockdown Techniques , Humans , Mice , Mice, Inbred C57BL , Odontoblasts/physiology , Phosphoproteins/analysis , Sialoglycoproteins/analysis , Signal Transduction/physiology , Smad3 Protein/analysis , Smad4 Protein/analysis , Tooth Root/physiology , Transforming Growth Factor beta1/analysis , Up-Regulation
15.
Am J Orthod Dentofacial Orthop ; 145(1): 36-40, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24373653

ABSTRACT

INTRODUCTION: Root resorption is an undesirable sequela of orthodontic treatment. It is necessary to establish sensitive methods for identification of teeth at risk for resorption. The x-ray is the traditional method to diagnose root resorption, which is often at a late stage. Some researchers used enzyme-linked immunosorbent immunoassay (ELISA) combined with spectrophotometry to study some biochemical markers of root resorption. However, spectrophotometric detection often has a poor detection limit. Electrochemical detection has inherent advantages over spectrophotometric detection, which is especially suitable for small biologic samples. METHODS: We used ELISA combined with electrochemistry and ELISA combined with spectrophotometry to measure the biochemical marker dentine sialophosphoprotein in gingival crevicular fluid of orthodontic patients (treated for 8-12 months). RESULTS: Standard dentine sialophosphoprotein was used to calculate the linear regression equation. No significant difference was found between the electrochemical outcome and the spectrophotometric outcome. But the electrochemical results extended the lower end of detection from 5 pg per milliliter (by spectrophotometry) to 0.5 pg per milliliter. CONCLUSIONS: These results showed that ELISA combined with electrochemistry is a reliable and sensitive method to detect dentine sialophosphoprotein in gingival crevicular fluid.


Subject(s)
Enzyme-Linked Immunosorbent Assay/methods , Extracellular Matrix Proteins/analysis , Phosphoproteins/analysis , Root Resorption/pathology , Sialoglycoproteins/analysis , Adolescent , Biomarkers/analysis , Electrochemical Techniques , Female , Gingival Crevicular Fluid/chemistry , Humans , Incisor/pathology , Male , Orthodontics, Corrective , Reproducibility of Results , Root Resorption/metabolism , Sensitivity and Specificity , Spectrophotometry/methods , Young Adult
16.
Am J Orthod Dentofacial Orthop ; 146(3): 337-45, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25172256

ABSTRACT

INTRODUCTION: There are multiple causes of external root resorption, but absent a disease state, it is most often observed when excessive physical force is used during orthodontic treatment. Even without mechanical stimulation, however, root resorption can still occur. The purpose of this study was to test whether Wnt signaling plays a role in pathologic root resorption, by conditionally deleting Wntless (Wls) from odontoblasts and osteoblasts and then evaluating the phenotypic effects on the maintenance of the root surface. METHODS: Ten (age, 1 month) and 20 (age, 3 months) OCN-Cre;Wls(fl/fl) mice and their wild-type littermates were evaluated using microcomputed tomography, histology, and immunohistochemistry. Phenotypic alterations in the alveolar bone, dentin, and cementum were characterized and quantified. RESULTS: In a genetic model of reduced Wnt signaling, we found that RANKL expression is upregulated, and osteoprotegerin expression is downregulated. This molecular disruption results in an increase in osteoclast activity, a decrease in osteoblast activity, and extensive, spontaneous root resorption. A genetic strain of mice in which Wnt signaling is elevated exhibits thicker cementum, whereas, even in the perinatal period, OCN-Cre;Wls(fl/fl) mice exhibit thinner cementum. CONCLUSIONS: Taken together, these data demonstrate that Wnts regulate cementum homeostasis, and that idiopathic cases of root resorption might have as their etiology a reduction in endogenous Wnt signaling.


Subject(s)
Down-Regulation/genetics , Root Resorption/genetics , Wnt Proteins/genetics , Acid Phosphatase/analysis , Age Factors , Alkaline Phosphatase/analysis , Alkaline Phosphatase/genetics , Alveolar Process/pathology , Animals , Axin Protein/analysis , Axin Protein/genetics , Dental Cementum/pathology , Dentin/pathology , Extracellular Matrix Proteins/analysis , Extracellular Matrix Proteins/genetics , Immunohistochemistry , Isoenzymes/analysis , Mice , Mice, Inbred Strains , Odontoblasts/metabolism , Osteoblasts/metabolism , Osteoblasts/pathology , Osteoprotegerin/analysis , Osteoprotegerin/genetics , Phenotype , Phosphoproteins/analysis , Phosphoproteins/genetics , RANK Ligand/analysis , RANK Ligand/genetics , Root Resorption/pathology , Sialoglycoproteins/analysis , Sialoglycoproteins/genetics , Tartrate-Resistant Acid Phosphatase , Tooth Cervix/pathology , Up-Regulation/genetics , Wnt Proteins/analysis , Wnt Signaling Pathway/genetics , X-Ray Microtomography
17.
J Exp Bot ; 64(18): 5569-86, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24123251

ABSTRACT

Previous studies have shown that polyethylene glycol (PEG)-induced osmotic stress (OS) reduces cell-wall (CW) porosity and limits aluminium (Al) uptake by root tips of common bean (Phaseolus vulgaris L.). A subsequent transcriptomic study suggested that genes related to CW processes are involved in adjustment to OS. In this study, a proteomic and phosphoproteomic approach was applied to identify OS-induced protein regulation to further improve our understanding of how OS affects Al accumulation. Analysis of total soluble proteins in root tips indicated that, in total, 22 proteins were differentially regulated by OS; these proteins were functionally categorized. Seventy-seven per- cent of the total expressed proteins were involved in metabolic pathways, particularly of carbohydrate and amino acid metabolism. An analysis of the apoplastic proteome revealed that OS reduced the level of five proteins and increased that of seven proteins. Investigation of the total soluble phosphoproteome suggested that dehydrin responded to OS with an enhanced phosphorylation state without a change in abundance. A cellular immunolocalization analysis indicated that dehydrin was localized mainly in the CW. This suggests that dehydrin may play a major protective role in the OS-induced physical breakdown of the CW structure and thus maintenance of the reversibility of CW extensibility during recovery from OS. The proteomic and phosphoproteomic analyses provided novel insights into the complex mechanisms of OS-induced reduction of Al accumulation in the root tips of common bean and highlight a key role for modification of CW structure.


Subject(s)
Osmotic Pressure , Phaseolus/physiology , Phosphoproteins/metabolism , Plant Proteins/metabolism , Amino Acids/metabolism , Carbohydrate Metabolism , Cell Wall/metabolism , Electrophoresis, Gel, Two-Dimensional , Phaseolus/drug effects , Phosphoproteins/analysis , Plant Proteins/analysis , Plant Roots/metabolism , Polyethylene Glycols/pharmacology , Proteomics/methods
18.
J Periodontal Res ; 48(4): 405-10, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23050778

ABSTRACT

BACKGROUND AND OBJECTIVE: Wingless-type MMTV integration site family (Wnt)/ß-catenin signaling plays an essential role in cellular differentiation and matrix formation during skeletal development. However, little is known about its role in tooth-root formation. In a previous study, we found excessive formation of dentin and cementum in mice with constitutive ß-catenin stabilization in the dental mesenchyme. In the present study we analyzed the molar roots of these mice to investigate the role of Wnt/ß-catenin signaling in root formation in more detail. MATERIAL AND METHODS: We generated OC-Cre:Catnb(+/lox(ex3)) mice by intercrossing Catnb(+/lox(ex3)) and OC-Cre mice, and we analyzed their mandibular molars using radiography, histomorphometry and immunohistochemistry. RESULTS: OC-Cre:Catnb(+/lox(ex3)) mice showed impaired root formation. At the beginning of root formation in mutant molars, dental papilla cells did not show normal differentiation into odontoblasts; rather, they were prematurely differentiated and had a disorganized arrangement. Interestingly, SMAD family member 4 was upregulated in premature odontoblasts. In 4-wk-old mutant mice, molar roots were about half the length of those in their wild-type littermates. In contrast to excessively formed dentin in crown, root dentin was thin and hypomineralized in mutant mice. Biglycan and dentin sialophosphoprotein were downregulated in root dentin of mutant mice, whereas dentin matrix protein 1 and Dickkopf-related protein 1 were upregulated. Additionally, ectonucleotide pyrophosphatase/phosphodiesterase 1 was significantly downregulated in the cementoblasts of mutant molars. Finally, in the cementum of mutant mice, bone sialoprotein was downregulated but Dickkopf-related protein 2 was upregulated. CONCLUSION: These results suggest that temporospatial regulation of Wnt/ß-catenin signaling plays an important role in cell differentiation and matrix formation during root and cementum formation.


Subject(s)
Odontogenesis/physiology , Tooth Root/growth & development , Wnt Signaling Pathway/physiology , Animals , Biglycan/analysis , Cell Differentiation/physiology , Cell Polarity/physiology , Cementogenesis/physiology , Dental Cementum/pathology , Dental Papilla/pathology , Dentin/pathology , Dentinogenesis/physiology , Down-Regulation , Extracellular Matrix Proteins/analysis , Integrin-Binding Sialoprotein/analysis , Intercellular Signaling Peptides and Proteins/analysis , Mice , Mice, Mutant Strains , Molar/growth & development , Mutation/genetics , Odontoblasts/pathology , Phosphoproteins/analysis , Phosphoric Diester Hydrolases , Pyrophosphatases , Sialoglycoproteins/analysis , Signal Transduction/physiology , Smad4 Protein/analysis , Up-Regulation , Wnt Signaling Pathway/genetics
19.
J Oral Pathol Med ; 42(10): 799-806, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23647197

ABSTRACT

Tooth tissue engineering offers very attractive perspectives for elaboration of regenerative treatments, which enables to cure tooth loss and restore quality of life of the patients. To elaborate such treatment, isolation and culture of dental pulp cell must be achieved as a key element. In this article, we report the establishment of a stable cell line from GFP transgenic rat dental pulp, named TGC (Tooth Matrix-forming, GFP Rat-derived Cell). TGCs have exhibited odontoblastic feature both in vitro and in vivo. In vitro, TGC exposed to osteogenic medium demonstrated collagen fiber synthesis with matrix vesicle and mineralization and formed a sheet-like substrate on the cell culture dish. Increased ALP activity and elevated transcription level of various genes involved in calcification and dentin formation were also observed. In vivo, transplanted TGC in SCID mice with ß-TCP particles formed dentin-like and pulp-like structure with lining odontoblast. Notably, even after up to 80 passages, TGCs retain their morphological features and differentiation ability. To our knowledge, this is the first report of a dental pulp-derived cell with such stable odontoblastic characteristics. TGC could be a very useful model for further study on dental pulp cell.


Subject(s)
Dental Pulp/cytology , Odontoblasts/physiology , Alkaline Phosphatase/analysis , Animals , Biocompatible Materials/chemistry , Calcification, Physiologic/physiology , Calcium Phosphates/chemistry , Cell Culture Techniques , Cell Differentiation/physiology , Cell Line , Cells, Cultured , Collagen/biosynthesis , Collagen/chemistry , Culture Media , Dental Pulp/physiology , Dentinogenesis/physiology , Drug Combinations , Extracellular Matrix Proteins/analysis , Female , Fibroblasts/physiology , Laminin/chemistry , Male , Mice , Mice, SCID , Odontoblasts/transplantation , Osteogenesis/physiology , Phosphoproteins/analysis , Proteoglycans/chemistry , Rats , Rats, Transgenic , Sialoglycoproteins/analysis , Subcutaneous Tissue/surgery , Tissue Scaffolds/chemistry
20.
Int Endod J ; 46(4): 371-8, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23095040

ABSTRACT

AIM: To detect and quantify dentine sialoprotein (DSP) in the gingival crevicular fluid (GCF) of luxated teeth. METHODOLOGY: Eighteen subjects were enroled and distributed as follows. Group I (n = 6, positive control): subjects with primary second molar teeth undergoing physiological root resorption. Group II (n = 6, negative control): subjects with permanent mature maxillary central incisors. Subjects with a recent history (<1 week) of luxation injury were included in group III (n = 6, test group) and standardized digital radiographs with a superimposed mesh gauge were exposed at various time intervals. Percentage of radiographic root resorption (%RRR) was calculated. GCF was collected using microcapillary pipettes. DSP in the GCF was quantified using enzyme-linked immunosorbant assay. Group III was subjected to Spearman's rank test to establish the correlation between the concentration of DSP and %RRR at 6 weeks, 3 and 6 months. RESULTS: Quantifiable amounts of DSP were released in the GCF of subjects in Group I and III. However, the protein was not detected in Group II. Detectable quantities of DSP were observed in the GCF of luxated teeth before any radiographic evidence of root resorption (base line radiograph). A positive correlation was established at 6 weeks (r = 0.795), 3 (r = 0.755) and 6 month (r = 0.837) between the release of DSP and %RRR (P < 0.05). CONCLUSION: Dentine sialoprotein was released in the GCF of luxated teeth and its concentration correlated with the active and remission phases of this pathological process. Further investigation is required to establish a potentially noninvasive aid for diagnosing and monitoring root resorption.


Subject(s)
Extracellular Matrix Proteins/biosynthesis , Gingival Crevicular Fluid/chemistry , Phosphoproteins/biosynthesis , Root Resorption , Sialoglycoproteins/biosynthesis , Tooth Injuries/complications , Adolescent , Child , Enzyme-Linked Immunosorbent Assay , Extracellular Matrix Proteins/analysis , Female , Humans , Male , Phosphoproteins/analysis , Root Resorption/diagnosis , Root Resorption/etiology , Root Resorption/metabolism , Sialoglycoproteins/analysis
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