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1.
Cell ; 165(2): 331-42, 2016 Apr 07.
Artículo en Inglés | MEDLINE | ID: mdl-27058665

RESUMEN

Regulation of enhancer activity is important for controlling gene expression programs. Here, we report that a biochemical complex containing a potential chromatin reader, RACK7, and the histone lysine 4 tri-methyl (H3K4me3)-specific demethylase KDM5C occupies many active enhancers, including almost all super-enhancers. Loss of RACK7 or KDM5C results in overactivation of enhancers, characterized by the deposition of H3K4me3 and H3K27Ac, together with increased transcription of eRNAs and nearby genes. Furthermore, loss of RACK7 or KDM5C leads to de-repression of S100A oncogenes and various cancer-related phenotypes. Our findings reveal a RACK7/KDM5C-regulated, dynamic interchange between histone H3K4me1 and H3K4me3 at active enhancers, representing an additional layer of regulation of enhancer activity. We propose that RACK7/KDM5C functions as an enhancer "brake" to ensure appropriate enhancer activity, which, when compromised, could contribute to tumorigenesis.


Asunto(s)
Carcinogénesis , Elementos de Facilitación Genéticos , Regulación de la Expresión Génica , Histona Demetilasas/metabolismo , Receptores de Superficie Celular/metabolismo , Animales , Técnicas de Inactivación de Genes , Xenoinjertos , Humanos , Ratones , Trasplante de Neoplasias , Receptores de Cinasa C Activada , Proteínas S100/genética , Transcripción Genética
2.
Mol Cell ; 82(6): 1156-1168.e7, 2022 03 17.
Artículo en Inglés | MEDLINE | ID: mdl-35219383

RESUMEN

N6-methyladenosine (m6A) methylation is co-transcriptionally deposited on mRNA, but a possible role of m6A on transcription remains poorly understood. Here, we demonstrate that the METTL3/METTL14/WTAP m6A methyltransferase complex (MTC) is localized to many promoters and enhancers and deposits the m6A modification on nascent transcripts, including pre-mRNAs, promoter upstream transcripts (PROMPTs), and enhancer RNAs. PRO-seq analyses demonstrate that nascent RNAs originating from both promoters and enhancers are significantly decreased in the METTL3-depleted cells. Furthermore, genes targeted by the Integrator complex for premature termination are depleted of METTL3, suggesting a potential antagonistic relationship between METTL3 and Integrator. Consistently, we found the Integrator complex component INTS11 elevated at promoters and enhancers upon loss of MTC or nuclear m6A binders. Taken together, our findings suggest that MTC-mediated m6A modification protects nascent RNAs from Integrator-mediated termination and promotes productive transcription, thus unraveling an unexpected layer of gene regulation imposed by RNA m6A modification.


Asunto(s)
Cromatina , Metiltransferasas , Cromatina/genética , Metilación , Metiltransferasas/genética , Metiltransferasas/metabolismo , ARN/genética , ARN/metabolismo , ARN Mensajero/genética , ARN Mensajero/metabolismo
3.
Nat Immunol ; 17(4): 397-405, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26928339

RESUMEN

The signaling adaptor TRAF3 is a highly versatile regulator of both innate immunity and adaptive immunity, but how its phosphorylation is regulated is still unknown. Here we report that deficiency in or inhibition of the conserved serine-threonine kinase CK1ɛ suppressed the production of type I interferon in response to viral infection. CK1ɛ interacted with and phosphorylated TRAF3 at Ser349, which thereby promoted the Lys63 (K63)-linked ubiquitination of TRAF3 and subsequent recruitment of the kinase TBK1 to TRAF3. Consequently, CK1ɛ-deficient mice were more susceptible to viral infection. Our findings establish CK1ɛ as a regulator of antiviral innate immune responses and indicate a novel mechanism of immunoregulation that involves CK1ɛ-mediated phosphorylation of TRAF3.


Asunto(s)
Caseína Cinasa 1 épsilon/inmunología , Inmunidad Innata/inmunología , Interferón beta/inmunología , Factor 3 Asociado a Receptor de TNF/inmunología , Animales , Caseína Cinasa 1 épsilon/antagonistas & inhibidores , Caseína Cinasa 1 épsilon/genética , Ensayo de Inmunoadsorción Enzimática , Células HEK293 , Células HeLa , Herpes Simple/inmunología , Herpesvirus Humano 1/inmunología , Humanos , Interferón Tipo I/biosíntesis , Interferón Tipo I/inmunología , Interferón beta/biosíntesis , Espectrometría de Masas , Ratones , Ratones Noqueados , Fosforilación , Proteínas Serina-Treonina Quinasas , Reacción en Cadena en Tiempo Real de la Polimerasa , Infecciones por Rhabdoviridae/inmunología , Factor 3 Asociado a Receptor de TNF/genética , Ubiquitinación , Vesiculovirus/inmunología , Fiebre del Nilo Occidental/inmunología , Virus del Nilo Occidental/inmunología
4.
Nature ; 591(7849): 317-321, 2021 03.
Artículo en Inglés | MEDLINE | ID: mdl-33505026

RESUMEN

METTL3 (methyltransferase-like 3) mediates the N6-methyladenosine (m6A) methylation of mRNA, which affects the stability of mRNA and its translation into protein1. METTL3 also binds chromatin2-4, but the role of METTL3 and m6A methylation in chromatin is not fully understood. Here we show that METTL3 regulates mouse embryonic stem-cell heterochromatin, the integrity of which is critical for silencing retroviral elements and for mammalian development5. METTL3 predominantly localizes to the intracisternal A particle (IAP)-type family of endogenous retroviruses. Knockout of Mettl3 impairs the deposition of multiple heterochromatin marks onto METTL3-targeted IAPs, and upregulates IAP transcription, suggesting that METTL3 is important for the integrity of IAP heterochromatin. We provide further evidence that RNA transcripts derived from METTL3-bound IAPs are associated with chromatin and are m6A-methylated. These m6A-marked transcripts are bound by the m6A reader YTHDC1, which interacts with METTL3 and in turn promotes the association of METTL3 with chromatin. METTL3 also interacts physically with the histone 3 lysine 9 (H3K9) tri-methyltransferase SETDB1 and its cofactor TRIM28, and is important for their localization to IAPs. Our findings demonstrate that METTL3-catalysed m6A modification of RNA is important for the integrity of IAP heterochromatin in mouse embryonic stem cells, revealing a mechanism of heterochromatin regulation in mammals.


Asunto(s)
Ensamble y Desensamble de Cromatina , Heterocromatina/genética , Heterocromatina/metabolismo , Metiltransferasas/metabolismo , Células Madre Embrionarias de Ratones/metabolismo , Animales , Retrovirus Endógenos/genética , Regulación de la Expresión Génica , Genes de Partícula A Intracisternal/genética , N-Metiltransferasa de Histona-Lisina/metabolismo , Histonas/química , Histonas/metabolismo , Ratones , Proteína 28 que Contiene Motivos Tripartito/metabolismo
5.
Mol Cell ; 69(6): 1028-1038.e6, 2018 03 15.
Artículo en Inglés | MEDLINE | ID: mdl-29547716

RESUMEN

N6-methyladenosine (m6A) is an abundant modification in eukaryotic mRNA, regulating mRNA dynamics by influencing mRNA stability, splicing, export, and translation. However, the precise m6A regulating machinery still remains incompletely understood. Here we demonstrate that ZC3H13, a zinc-finger protein, plays an important role in modulating RNA m6A methylation in the nucleus. We show that knockdown of Zc3h13 in mouse embryonic stem cell significantly decreases global m6A level on mRNA. Upon Zc3h13 knockdown, a great majority of WTAP, Virilizer, and Hakai translocate to the cytoplasm, suggesting that Zc3h13 is required for nuclear localization of the Zc3h13-WTAP-Virilizer-Hakai complex, which is important for RNA m6A methylation. Finally, Zc3h13 depletion, as does WTAP, Virilizer, or Hakai, impairs self-renewal and triggers mESC differentiation. Taken together, our findings demonstrate that Zc3h13 plays a critical role in anchoring WTAP, Virilizer, and Hakai in the nucleus to facilitate m6A methylation and to regulate mESC self-renewal.


Asunto(s)
Adenosina/análogos & derivados , Núcleo Celular/metabolismo , Proliferación Celular , Autorrenovación de las Células , Células Madre Embrionarias de Ratones/metabolismo , Proteínas Nucleares/metabolismo , Procesamiento Postranscripcional del ARN , ARN Mensajero/metabolismo , Regiones no Traducidas 3' , Transporte Activo de Núcleo Celular , Adenosina/metabolismo , Animales , Proteínas Portadoras/genética , Proteínas Portadoras/metabolismo , Proteínas de Ciclo Celular , Diferenciación Celular , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/metabolismo , Regulación del Desarrollo de la Expresión Génica , Células HEK293 , Humanos , Metilación , Ratones , Proteínas Nucleares/genética , Factores de Empalme de ARN , Estabilidad del ARN , ARN Mensajero/genética , Proteínas de Unión al ARN , Transducción de Señal , Ubiquitina-Proteína Ligasas/genética , Ubiquitina-Proteína Ligasas/metabolismo
6.
Nucleic Acids Res ; 51(4): 1674-1686, 2023 02 28.
Artículo en Inglés | MEDLINE | ID: mdl-36660822

RESUMEN

ZNF410 is a highly-conserved transcription factor, remarkable in that it recognizes a 15-base pair DNA element but has just a single responsive target gene in mammalian erythroid cells. ZNF410 includes a tandem array of five zinc-fingers (ZFs), surrounded by uncharacterized N- and C-terminal regions. Unexpectedly, full-length ZNF410 has reduced DNA binding affinity, compared to that of the isolated DNA binding ZF array, both in vitro and in cells. AlphaFold predicts a partially-folded N-terminal subdomain that includes a 30-residue long helix, preceded by a hairpin loop rich in acidic (aspartate/glutamate) and serine/threonine residues. This hairpin loop is predicted by AlphaFold to lie against the DNA binding interface of the ZF array. In solution, ZNF410 is a monomer and binds to DNA with 1:1 stoichiometry. Surprisingly, the single best-fit model for the experimental small angle X-ray scattering profile, in the absence of DNA, is the original AlphaFold model with the N-terminal long-helix and the hairpin loop occupying the ZF DNA binding surface. For DNA binding, the hairpin loop presumably must be displaced. After combining biophysical, biochemical, bioinformatic and artificial intelligence-based AlphaFold analyses, we suggest that the hairpin loop mimics the structure and electrostatics of DNA, and provides an additional mechanism, supplementary to sequence specificity, of regulating ZNF410 DNA binding.


Asunto(s)
Factores de Transcripción , Animales , Secuencia de Aminoácidos , Inteligencia Artificial , Mamíferos/genética , Unión Proteica , Dominios Proteicos , Dedos de Zinc/genética , Factores de Transcripción/química , Factores de Transcripción/metabolismo
7.
Appl Microbiol Biotechnol ; 108(1): 1, 2024 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-38153551

RESUMEN

Phospholipids are distinctive, adaptable molecules that are crucial to numerous biological systems. Additionally, their various architectures and amphiphilic characteristics support their unrivaled crucial functions in scientific and industrial applications. Due to their enormous potential for use in the fields of medicine, food, cosmetics, and health, structured phospholipids, which are modified phospholipids, have garnered increased attention. Traditional extraction methods, however, are pricy, resource-intensive, and low-yielding. The process of enzyme-catalyzed conversion is effective for producing several types of structured phospholipase. However, most frequently employed catalytic procedures involve biphasic systems with organic solvents, which have a relatively large mass transfer resistance and are susceptible to solvent residues and environmental effects due to the hydrophobic nature of phospholipids. Therefore, the adoption of innovative, successful, and environmentally friendly enzyme-catalyzed conversion systems provides a new development route in the field of structured phospholipids processing. Several innovative catalytic reaction systems are discussed in this mini-review, including aqueous-solid system, mixed micelle system, water-in-oil microemulsion system, Pickering emulsion system, novel solvent system, three-liquid-phase system, and supercritical carbon dioxide solvent system. However, there is still a glaring need for a thorough examination of these systems for the enzymatic synthesis of structural phospholipids. In terms of the materials utilized, applicability, benefits and drawbacks, and comparative effectiveness of each system, this research establishes further conditions for the system's selection. To create more effective biocatalytic processes, it is still important to build green biocatalytic processes with improved performance. KEY POINTS: • The latest catalytic systems of phospholipase D are thoroughly summarized. • The various systems are contrasted, and their traits are enumerated. • Different catalytic systems' areas of applicability and limitations are discussed.


Asunto(s)
Dióxido de Carbono , Clima , Catálisis , Biocatálisis , Solventes
8.
J Nanobiotechnology ; 22(1): 234, 2024 May 09.
Artículo en Inglés | MEDLINE | ID: mdl-38724978

RESUMEN

Radiotherapy-induced immune activation holds great promise for optimizing cancer treatment efficacy. Here, we describe a clinically used radiosensitizer hafnium oxide (HfO2) that was core coated with a MnO2 shell followed by a glucose oxidase (GOx) doping nanoplatform (HfO2@MnO2@GOx, HMG) to trigger ferroptosis adjuvant effects by glutathione depletion and reactive oxygen species production. This ferroptosis cascade potentiation further sensitized radiotherapy by enhancing DNA damage in 4T1 breast cancer tumor cells. The combination of HMG nanoparticles and radiotherapy effectively activated the damaged DNA and Mn2+-mediated cGAS-STING immune pathway in vitro and in vivo. This process had significant inhibitory effects on cancer progression and initiating an anticancer systemic immune response to prevent distant tumor recurrence and achieve long-lasting tumor suppression of both primary and distant tumors. Furthermore, the as-prepared HMG nanoparticles "turned on" spectral computed tomography (CT)/magnetic resonance dual-modality imaging signals, and demonstrated favorable contrast enhancement capabilities activated by under the GSH tumor microenvironment. This result highlighted the potential of nanoparticles as a theranostic nanoplatform for achieving molecular imaging guided tumor radiotherapy sensitization induced by synergistic immunotherapy.


Asunto(s)
Ferroptosis , Inmunoterapia , Compuestos de Manganeso , Proteínas de la Membrana , Ratones Endogámicos BALB C , Nanopartículas , Nucleotidiltransferasas , Óxidos , Fármacos Sensibilizantes a Radiaciones , Animales , Ratones , Inmunoterapia/métodos , Óxidos/química , Óxidos/farmacología , Femenino , Nucleotidiltransferasas/metabolismo , Compuestos de Manganeso/química , Compuestos de Manganeso/farmacología , Línea Celular Tumoral , Nanopartículas/química , Fármacos Sensibilizantes a Radiaciones/farmacología , Fármacos Sensibilizantes a Radiaciones/química , Proteínas de la Membrana/metabolismo , Ferroptosis/efectos de los fármacos , Glucosa Oxidasa/metabolismo , Especies Reactivas de Oxígeno/metabolismo , Humanos , Daño del ADN , Microambiente Tumoral/efectos de los fármacos
9.
Molecules ; 27(8)2022 Apr 16.
Artículo en Inglés | MEDLINE | ID: mdl-35458777

RESUMEN

Citrus is one of the most important economic crops and is widely distributed across the monsoon region. Citrus fruits are deeply loved by consumers because of their special color, fragrance and high nutritional value. However, their health benefits have not been fully understood, especially the pericarps of citrus fruits which have barely been utilized due to their unknown chemical composition. In the present study, the pericarp and juices of four typical varieties of citrus fruits (lemon, dekopon, sweet orange and pomelo) were analyzed by NMR spectroscopy combined with pattern recognition. A total of 62 components from the citrus juices and 87 components from the citrus pericarps were identified and quantified, respectively. The different varieties of the citrus fruits could be distinguished from the others, and the chemical markers in each citrus juice and pericarp were identified by a combination of univariate and multivariate statistical analyses. The nutritional analysis of citrus juices offers favorable diet recommendations for human consumption and data guidance for their potential medical use, and the nutritional analysis of citrus pericarps provides a data reference for the subsequent comprehensive utilization of citrus fruits. Our results not only provide an important reference for the potential nutritional and medical values of citrus fruits but also provide a feasible platform for the traceability analysis, adulteration identification and chemical composition analysis of other fruits.


Asunto(s)
Citrus sinensis , Citrus , Citrus/química , Citrus sinensis/química , Frutas/química , Espectroscopía de Resonancia Magnética , Valor Nutritivo
10.
J Neurosci ; 40(29): 5644-5657, 2020 07 15.
Artículo en Inglés | MEDLINE | ID: mdl-32527983

RESUMEN

Does the nature of representation in the category-selective regions in the occipitotemporal cortex reflect visual or conceptual properties? Previous research showed that natural variability in visual features across categories, quantified by image gist statistics, is highly correlated with the different neural responses observed in the occipitotemporal cortex. Using fMRI, we examined whether category selectivity for animals and tools would remain, when image gist statistics were comparable across categories. Critically, we investigated how category, shape, and spatial frequency may contribute to the category selectivity in the animal- and tool-selective regions. Female and male human observers viewed low- or high-passed images of round or elongated animals and tools that shared comparable gist statistics in the main experiment, and animal and tool images of naturally varied gist statistics in a separate localizer. Univariate analysis revealed robust category-selective responses for images with comparable gist statistics across categories. Successful classification for category (animals/tools), shape (round/elongated), and spatial frequency (low/high) was also observed, with highest classification accuracy for category. Representational similarity analyses further revealed that the activation patterns in the animal-selective regions were most correlated with a model that represents only animal information, whereas the activation patterns in the tool-selective regions were most correlated with a model that represents only tool information, suggesting that these regions selectively represent information of only animals or tools. Together, in addition to visual features, the distinction between animal and tool representations in the occipitotemporal cortex is likely shaped by higher-level conceptual influences such as categorization or interpretation of visual inputs.SIGNIFICANCE STATEMENT Since different categories often vary systematically in both visual and conceptual features, it remains unclear what kinds of information determine category-selective responses in the occipitotemporal cortex. To minimize the influences of low- and mid-level visual features, here we used a diverse image set of animals and tools that shared comparable gist statistics. We manipulated category (animals/tools), shape (round/elongated), and spatial frequency (low/high), and found that the representational content of the animal- and tool-selective regions is primarily determined by their preferred categories only, regardless of shape or spatial frequency. Our results show that category-selective responses in the occipitotemporal cortex are influenced by higher-level processing such as categorization or interpretation of visual inputs, and highlight the specificity in these category-selective regions.


Asunto(s)
Lóbulo Occipital/fisiología , Reconocimiento Visual de Modelos/fisiología , Lóbulo Temporal/fisiología , Adulto , Mapeo Encefálico , Interpretación Estadística de Datos , Femenino , Humanos , Imagen por Resonancia Magnética , Masculino , Estimulación Luminosa , Adulto Joven
11.
Int J Mol Sci ; 22(3)2021 Jan 29.
Artículo en Inglés | MEDLINE | ID: mdl-33572787

RESUMEN

Age-related macular degeneration (AMD) is the progressive degeneration of the retinal pigment epithelium (RPE), retina, and choriocapillaris among elderly individuals and is the leading cause of blindness worldwide. Thus, a better understanding of the underlying mechanisms in retinal tissue activated by blue light exposure is important for developing novel treatment and intervention strategies. In this study, blue-light-emitting diodes with a wavelength of 440 nm were applied to RPE cells at a dose of 3.7 ± 0.75 mW/cm2 for 24 h. ARPE-19 cells were used to investigate the underlying mechanism induced by blue light exposure. A trypan blue exclusion assay was used for the cell viability determination. Flow cytometry was used for apoptosis rate detection and autophagy analysis. An immunofluorescence microscopy analysis was used to investigate cellular oxidative stress and DNA damage using DCFDA fluorescence staining and an anti-γH2AX antibody. Blue light exposure of zebrafish larvae was established to investigate the effect on retinal tissue development in vivo. To further demonstrate the comprehensive effect of blue light on ARPE-19 cells, next-generation sequencing (NGS) was performed for an ingenuity pathway analysis (IPA) to reveal additional related mechanisms. The results showed that blue light exposure caused a decrease in cell proliferation and an increase in apoptosis in ARPE-19 cells in a time-dependent manner. Oxidative stress increased during the early stage of 2 h of exposure and activated DNA damage in ARPE-19 cells after 8 h. Furthermore, autophagy was activated in response to blue light exposure at 24-48 h. The zebrafish larvae model showed the unfavorable effect of blue light in prohibiting retinal tissue development. The RNA-Seq results confirmed that blue light induced cell death and participated in tissue growth inhibition and maturation. The current study reveals the mechanisms by which blue light induces cell death in a time-dependent manner. Moreover, both the in vivo and NGS data uncovered blue light's effect on retinal tissue development, suggesting that exposing children to blue light could be relatively dangerous. These results could benefit the development of preventive strategies utilizing herbal medicine-based treatments for eye diseases or degeneration in the future.


Asunto(s)
Autofagia/efectos de la radiación , Daño del ADN/efectos de la radiación , Luz/efectos adversos , Degeneración Macular/etiología , Estrés Oxidativo/efectos de la radiación , Epitelio Pigmentado de la Retina/efectos de la radiación , Animales , Línea Celular , Modelos Animales de Enfermedad , Humanos , Degeneración Macular/genética , Degeneración Macular/metabolismo , Degeneración Macular/patología , Epitelio Pigmentado de la Retina/metabolismo , Epitelio Pigmentado de la Retina/patología , Pez Cebra
12.
J Vis ; 19(12): 22, 2019 10 01.
Artículo en Inglés | MEDLINE | ID: mdl-31648308

RESUMEN

Distinct concepts, such as animate and inanimate entities, comprise vast and systematic differences in visual features. While observers search for animals faster than man-made objects, it remains unclear to what extent visual or conceptual information contributes to such differences in visual search performance. Previous studies demonstrated that visual features are likely sufficient for distinguishing animals from man-made objects. Across four experiments, we examined whether low- or mid-level visual features solely contribute to the search advantage for animals by using images of comparable visual shape and gist statistics across the categories. Participants searched for either animal or man-made object targets on a multiple-item display with fruit/vegetable distractors. We consistently observed faster search performance for animal than man-made object targets. Such advantage for animals was unlikely affected by differences in low- or mid-level visual properties or whether observers were either explicitly told about the specific targets or not explicitly told to search for either animals or man-made objects. Instead, the efficiency in categorizing animals over man-made objects appeared to contribute to the search advantage. We suggest that apart from low- or mid-level visual differences among categories, higher-order processes, such as categorization via interpreting visual inputs and mapping them onto distinct concepts, may be critical in shaping category-selective effects.


Asunto(s)
Reconocimiento Visual de Modelos , Reconocimiento en Psicología , Corteza Visual/fisiología , Percepción Visual , Adolescente , Animales , Formación de Concepto , Femenino , Humanos , Masculino , Estimulación Luminosa , Adulto Joven
13.
J Neurosci ; 37(18): 4705-4716, 2017 05 03.
Artículo en Inglés | MEDLINE | ID: mdl-28381591

RESUMEN

Human ventral occipital temporal cortex contains clusters of neurons that show domain-preferring responses during visual perception. Recent studies have reported that some of these clusters show surprisingly similar domain selectivity in congenitally blind participants performing nonvisual tasks. An important open question is whether these functional similarities are driven by similar innate connections in blind and sighted groups. Here we addressed this question focusing on the parahippocampal gyrus (PHG), a region that is selective for large objects and scenes. Based on the assumption that patterns of long-range connectivity shape local computation, we examined whether domain selectivity in PHG is driven by similar structural connectivity patterns in the two populations. Multiple regression models were built to predict the selectivity of PHG voxels for large human-made objects from white matter (WM) connectivity patterns in both groups. These models were then tested using independent data from participants with similar visual experience (two sighted groups) and using data from participants with different visual experience (blind and sighted groups). Strikingly, the WM-based predictions between blind and sighted groups were as successful as predictions between two independent sighted groups. That is, the functional selectivity for large objects of a PHG voxel in a blind participant could be accurately predicted by its WM pattern using the connection-to-function model built from the sighted group data, and vice versa. Regions that significantly predicted PHG selectivity were located in temporal and frontal cortices in both sighted and blind populations. These results show that the large-scale network driving domain selectivity in PHG is independent of vision.SIGNIFICANCE STATEMENT Recent studies have reported intriguingly similar domain selectivity in sighted and congenitally blind individuals in regions within the ventral visual cortex. To examine whether these similarities originate from similar innate connectional roots, we investigated whether the domain selectivity in one population could be predicted by the structural connectivity pattern of the other. We found that the selectivity for large objects of a PHG voxel in a blind participant could be predicted by its structural connectivity pattern using the connection-to-function model built from the sighted group data, and vice versa. These results reveal that the structural connectivity underlying domain selectivity in the PHG is independent of visual experience, providing evidence for nonvisual representations in this region.


Asunto(s)
Ceguera/fisiopatología , Conducta Exploratoria/fisiología , Red Nerviosa/fisiopatología , Vías Nerviosas/fisiopatología , Giro Parahipocampal/fisiopatología , Percepción Visual/fisiología , Adulto , Conectoma/métodos , Femenino , Humanos , Masculino , Persona de Mediana Edad , Plasticidad Neuronal , Vías Visuales/fisiopatología
14.
Eur J Immunol ; 47(9): 1414-1426, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28744851

RESUMEN

The innate immune system initiates immune responses by pattern-recognition receptors (PRR). Virus-derived nucleic acids are sensed by the retinoic acid-inducible gene I (RIG-I)-like receptor (RLR) family and the toll-like receptor (TLR) family as well as the DNA sensor cyclic GMP-AMP (cGAMP) synthase (cGAS). These receptors activate IRF3/7 and NF-κB signaling pathways to induce the expression of type I interferons (IFNs) and other cytokines firing antiviral responses within the cell. However, to achieve a favorable outcome for the host, a balanced production of IFNs and activation of antiviral responses is required. Post-translational modifications (PTMs), such as the covalent linkage of functional groups to amino acid chains, are crucial for this immune homeostasis in antiviral responses. Canonical PTMs including phosphorylation and ubiquitination have been extensively studied and other PTMs such as methylation, acetylation, SUMOylation, ADP-ribosylation and glutamylation are being increasingly implicated in antiviral innate immunity. Here we summarize our recent understanding of the most important PTMs regulating the antiviral innate immune response, and their role in virus-related immune pathogenesis.


Asunto(s)
ADN Viral/inmunología , Inmunidad Innata , Procesamiento Proteico-Postraduccional , ARN Viral/inmunología , Virosis/inmunología , Animales , Humanos , Interferón Tipo I/genética , Interferón Tipo I/metabolismo , FN-kappa B/metabolismo , Receptores de Reconocimiento de Patrones/metabolismo , Transducción de Señal , Receptores Toll-Like/metabolismo
15.
Infect Immun ; 85(9)2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28652310

RESUMEN

Exoenzyme Y (ExoY) is a type III secretion system effector found in 90% of the Pseudomonas aeruginosa isolates. Although it is known that ExoY is a soluble nucleotidyl cyclase that increases the cytoplasmic levels of nucleoside 3',5'-cyclic monophosphates (cNMPs) to mediate endothelial Tau phosphorylation and permeability, its functional role in the innate immune response is still poorly understood. Transforming growth factor ß-activated kinase 1 (TAK1) is critical for mediating Toll-like receptor (TLR) signaling and subsequent activation of NF-κB and AP-1, which are transcriptional activators of innate immunity. Here, we report that ExoY inhibits proinflammatory cytokine production through suppressing the activation of TAK1 as well as downstream NF-κB and mitogen-activated protein (MAP) kinases. Mice infected with ExoY-deficient P. aeruginosa had higher levels of tumor necrosis factor (TNF) and interleukin-6 (IL-6), more neutrophil recruitment, and a lower bacterial load in lung tissue than mice infected with wild-type P. aeruginosa Taken together, our findings identify a previously unknown mechanism by which P. aeruginosa ExoY inhibits the host innate immune response.


Asunto(s)
Proteínas Bacterianas/metabolismo , Glucosiltransferasas/metabolismo , Interacciones Huésped-Patógeno , Evasión Inmune , Inmunidad Innata , Quinasas Quinasa Quinasa PAM/antagonistas & inhibidores , Liasas de Fósforo-Oxígeno/metabolismo , Pseudomonas aeruginosa/patogenicidad , Animales , Proteínas Bacterianas/genética , Línea Celular , Citocinas/metabolismo , Modelos Animales de Enfermedad , Femenino , Eliminación de Gen , Glucosiltransferasas/genética , Humanos , Ratones Endogámicos C57BL , FN-kappa B/metabolismo , Liasas de Fósforo-Oxígeno/genética , Infecciones por Pseudomonas/microbiología , Infecciones por Pseudomonas/patología , Pseudomonas aeruginosa/enzimología , Factor de Transcripción AP-1/metabolismo
16.
J Neurosci ; 35(36): 12545-59, 2015 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-26354920

RESUMEN

Classical animal visual deprivation studies and human neuroimaging studies have shown that visual experience plays a critical role in shaping the functionality and connectivity of the visual cortex. Interestingly, recent studies have additionally reported circumscribed regions in the visual cortex in which functional selectivity was remarkably similar in individuals with and without visual experience. Here, by directly comparing resting-state and task-based fMRI data in congenitally blind and sighted human subjects, we obtained large-scale continuous maps of the degree to which connectional and functional "fingerprints" of ventral visual cortex depend on visual experience. We found a close agreement between connectional and functional maps, pointing to a strong interdependence of connectivity and function. Visual experience (or the absence thereof) had a pronounced effect on the resting-state connectivity and functional response profile of occipital cortex and the posterior lateral fusiform gyrus. By contrast, connectional and functional fingerprints in the anterior medial and posterior lateral parts of the ventral visual cortex were statistically indistinguishable between blind and sighted individuals. These results provide a large-scale mapping of the influence of visual experience on the development of both functional and connectivity properties of visual cortex, which serves as a basis for the formulation of new hypotheses regarding the functionality and plasticity of specific subregions. Significance statement: How is the functionality and connectivity of the visual cortex shaped by visual experience? By directly comparing resting-state and task-based fMRI data in congenitally blind and sighted subjects, we obtained large-scale continuous maps of the degree to which connectional and functional "fingerprints" of ventral visual cortex depend on visual experience. In addition to revealing regions that are strongly dependent on visual experience (early visual cortex and posterior fusiform gyrus), our results showed regions in which connectional and functional patterns are highly similar in blind and sighted individuals (anterior medial and posterior lateral ventral occipital temporal cortex). These results serve as a basis for the formulation of new hypotheses regarding the functionality and plasticity of specific subregions of the visual cortex.


Asunto(s)
Ceguera/fisiopatología , Conectoma , Corteza Visual/fisiología , Adolescente , Adulto , Ceguera/congénito , Estudios de Casos y Controles , Femenino , Humanos , Masculino , Persona de Mediana Edad , Corteza Visual/fisiopatología
17.
J Neurosci ; 34(1): 163-70, 2014 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-24381278

RESUMEN

Knowledge of object shape is primarily acquired through the visual modality but can also be acquired through other sensory modalities. In the present study, we investigated the representation of object shape in humans without visual experience. Congenitally blind and sighted participants rated the shape similarity of pairs of 33 familiar objects, referred to by their names. The resulting shape similarity matrices were highly similar for the two groups, indicating that knowledge of the objects' shapes was largely independent of visual experience. Using fMRI, we tested for brain regions that represented object shape knowledge in blind and sighted participants. Multivoxel activity patterns were established for each of the 33 aurally presented object names. Sighted participants additionally viewed pictures of these objects. Using representational similarity analysis, neural similarity matrices were related to the behavioral shape similarity matrices. Results showed that activity patterns in occipitotemporal cortex (OTC) regions, including inferior temporal (IT) cortex and functionally defined object-selective cortex (OSC), reflected the behavioral shape similarity ratings in both blind and sighted groups, also when controlling for the objects' tactile and semantic similarity. Furthermore, neural similarity matrices of IT and OSC showed similarities across blind and sighted groups (within the auditory modality) and across modality (within the sighted group), but not across both modality and group (blind auditory-sighted visual). Together, these findings provide evidence that OTC not only represents objects visually (requiring visual experience) but also represents objects nonvisually, reflecting knowledge of object shape independently of the modality through which this knowledge was acquired.


Asunto(s)
Estimulación Acústica/métodos , Ceguera/fisiopatología , Lóbulo Occipital/fisiología , Reconocimiento Visual de Modelos/fisiología , Estimulación Luminosa/métodos , Lóbulo Temporal/fisiología , Adulto , Ceguera/diagnóstico , Femenino , Humanos , Imagen por Resonancia Magnética/métodos , Masculino
18.
PLoS Pathog ; 9(8): e1003545, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23990780

RESUMEN

Nuclear hormone receptors respond to small molecules such as retinoids or steroids and regulate development. Signaling in the conserved p38/PMK-1 MAP kinase pathway regulates innate immunity. In this study, we show that the Caenorhabditis elegans nuclear receptor DAF-12 negatively regulates the defense against pathogens via the downstream let-7 family of microRNAs, which directly target SKN-1, a gene downstream of PMK-1. These findings identify nuclear hormone receptors as components of innate immunity that crosstalk with the p38/PMK-1 MAP kinase pathway.


Asunto(s)
Proteínas de Caenorhabditis elegans/inmunología , Caenorhabditis elegans/inmunología , Inmunidad Innata/fisiología , Sistema de Señalización de MAP Quinasas/inmunología , MicroARNs/inmunología , Receptores Citoplasmáticos y Nucleares/inmunología , Animales , Caenorhabditis elegans/genética , Proteínas de Caenorhabditis elegans/genética , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/inmunología , Sistema de Señalización de MAP Quinasas/genética , MicroARNs/genética , Proteínas Quinasas Activadas por Mitógenos/genética , Proteínas Quinasas Activadas por Mitógenos/inmunología , Receptores Citoplasmáticos y Nucleares/genética , Factores de Transcripción/genética , Factores de Transcripción/inmunología
19.
Cereb Cortex ; 24(2): 541-9, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-23118194

RESUMEN

In congenitally blind individuals, many regions of the brain that are typically heavily involved in visual processing are recruited for a variety of nonvisual sensory and cognitive tasks (Rauschecker 1995; Pascual-Leone et al. 2005). This phenomenon-cross-modal plasticity-has been widely documented, but the principles that determine where and how cross-modal changes occur remain poorly understood (Bavelier and Neville 2002). Here, we evaluate the hypothesis that cross-modal plasticity respects the type of computations performed by a region, even as it changes the modality of the inputs over which they are carried out (Pascual-Leone and Hamilton 2001). We compared the fMRI signal in sighted and congenitally blind participants during proprioceptively guided reaching. We show that parietooccipital reach-related regions retain their functional role-encoding of the spatial position of the reach target-even as the dominant modality in this region changes from visual to nonvisual inputs. This suggests that the computational role of a region, independently of the processing modality, codetermines its potential cross-modal recruitment. Our findings demonstrate that preservation of functional properties can serve as a guiding principle for cross-modal plasticity even in visuomotor cortical regions, i.e. beyond the early visual cortex and other traditional visual areas.


Asunto(s)
Ceguera/fisiopatología , Actividad Motora/fisiología , Plasticidad Neuronal , Lóbulo Parietal/fisiopatología , Propiocepción/fisiología , Percepción Visual/fisiología , Adulto , Brazo/fisiología , Encéfalo/fisiopatología , Femenino , Humanos , Imagen por Resonancia Magnética , Masculino , Persona de Mediana Edad , Vías Nerviosas/fisiopatología , Lóbulo Occipital/fisiopatología
20.
Materials (Basel) ; 17(6)2024 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-38541393

RESUMEN

A synthetic flocculant of aluminum (Al) and iron (Fe) extracted from red mud (RM) has been widely used in sewage treatment, while the remaining RM residue has been ignored. This study aimed to synthesize polymeric aluminum ferric sulfate (PAFS) flocculant from RM by acid leaching and then use the acidified RM residue to produce an acid RM-based ceramsite (ARMC) by mixing bentonite, hydroxypropyl methylcellulose, and starch. Our results showed that sintering, reaction temperature, H2SO4 concentration, reaction time, and liquid-to-solid ratio had an obvious effect on the leaching of Al and Fe in RM, which was a necessary prerequisite for the efficient PAFS flocculants. At a PAFS dosage of 60 mg/L, turbidity and phosphate removal rates were 95.21 ± 0.64% and 89.17 ± 0.52%, respectively. When the pH value was 8.0, the turbidity and phosphate removal efficiency were 99.22 ± 0.66% and 95.98 ± 1.63%, respectively. Considering the adsorption capacity and mechanical properties, the best conditions for ARMC production included using 60% ARM and ceramsite calcination at 600 °C, with the BET surface area 56.16 m2/g and a pore volume of 0.167 cm3/g. Thermogravimetric analysis indicated that 400 °C was a reasonable preheating temperature to enhance the ARMC mechanical strength, as this temperature allows the removal of surface-adsorbed and constituent water. Under a scanning electron microscope, the ARMC appeared rough before adsorption, while relatively uniform pores occupied it after adsorption. Our conclusion will help to improve the zero-waste strategy of RM and speed up the industrial production of RM in flocculants as well as utilizing ARMC as a new type of adsorbent for phosphorus adsorption in sewage treatment.

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