Scaling Law Describes the Spin-Glass Response in Theory, Experiments, and Simulations.

The correlation length ξ, a key quantity in glassy dynamics, can now be precisely measured for spin glasses both in experiments and in simulations. However, known analysis methods lead to discrepancies either for large external fields or close to the glass temperature. We solve this problem by introducing a scaling law that takes into account both the magnetic field and the time-dependent spin-glass correlation length. The scaling law is successfully tested against experimental measurements in a CuMn single crystal and against large-scale simulations on the Janus II dedicated computer.

Aging Rate of Spin Glasses from Simulations Matches Experiments.

Experiments on spin glasses can now make precise measurements of the exponent z(T) governing the growth of glassy domains, while our computational capabilities allow us to make quantitative predictions for experimental scales. However, experimental and numerical values for z(T) have differed. We use new simulations on the Janus II computer to resolve this discrepancy, finding a time-dependent z(T,t_{w}), which leads to the experimental value through mild extrapolations. Furthermore, theoretical insight is gained by studying a crossover between the T=T_{c} and T=0 fixed points.

Numerical Construction of the Aizenman-Wehr Metastate.

Chaotic size dependence makes it extremely difficult to take the thermodynamic limit in disordered systems. Instead, the metastate, which is a distribution over thermodynamic states, might have a smooth limit. So far, studies of the metastate have been mostly mathematical. We present a numerical construction of the metastate for the d=3 Ising spin glass. We work in equilibrium, below the critical temperature. Leveraging recent rigorous results, our numerical analysis gives evidence for a dispersed metastate, supported on many thermodynamic states.

Matching Microscopic and Macroscopic Responses in Glasses.

We first reproduce on the Janus and Janus II computers a milestone experiment that measures the spin-glass coherence length through the lowering of free-energy barriers induced by the Zeeman effect. Secondly, we determine the scaling behavior that allows a quantitative analysis of a new experiment reported in the companion Letter [S. Guchhait and R. Orbach, Phys. Rev. Lett. 118, 157203 (2017)].PRLTAO0031-900710.1103/PhysRevLett.118.157203 The value of the coherence length estimated through the analysis of microscopic correlation functions turns out to be quantitatively consistent with its measurement through macroscopic response functions. Further, nonlinear susceptibilities, recently measured in glass-forming liquids, scale as powers of the same microscopic length.

Dynamical transition in the D=3 Edwards-Anderson spin glass in an external magnetic field.

We study the off-equilibrium dynamics of the three-dimensional Ising spin glass in the presence of an external magnetic field. We have performed simulations both at fixed temperature and with an annealing protocol. Thanks to the Janus special-purpose computer, based on field-programmable gate array (FPGAs), we have been able to reach times equivalent to 0.01 s in experiments. We have studied the system relaxation both for high and for low temperatures, clearly identifying a dynamical transition point. This dynamical temperature is strictly positive and depends on the external applied magnetic field. We discuss different possibilities for the underlying physics, which include a thermodynamical spin-glass transition, a mode-coupling crossover, or an interpretation reminiscent of the random first-order picture of structural glasses.

Optimal fluxes, reaction replaceability, and response to enzymopathies in the human red blood cell.

Characterizing the capabilities, key dependencies, and response to perturbations of genome-scale metabolic networks is a basic problem with important applications. A key question concerns the identification of the potentially most harmful reaction knockouts. The integration of combinatorial methods with sampling techniques to explore the space of viable flux states may provide crucial insights on this issue. We assess the replaceability of every metabolic conversion in the human red blood cell by enumerating the alternative paths from substrate to product, obtaining a complete map of he potential damage of single enzymopathies. Sampling the space of optimal steady state fluxes in the healthy and in the mutated cell reveals both correlations and complementarity between topologic and dynamical aspects.

Static versus dynamic heterogeneities in the D = 3 Edwards-Anderson-Ising spin glass.

We numerically study the aging properties of the dynamical heterogeneities in the Ising spin glass. We find that a phase transition takes place during the aging process. Statics-dynamics correspondence implies that systems of finite size in equilibrium have static heterogeneities that obey finite-size scaling, thus signaling an analogous phase transition in the thermodynamical limit. We compute the critical exponents and the transition point in the equilibrium setting, and use them to show that aging in dynamic heterogeneities can be described by a finite-time scaling ansatz, with potential implications for experimental work.

Nonequilibrium spin-glass dynamics from picoseconds to a tenth of a second.

We study numerically the nonequilibrium dynamics of the Ising spin glass, for a time spanning 11 orders of magnitude, thus approaching the experimentally relevant scale (i.e., seconds). We introduce novel analysis techniques to compute the coherence length in a model-independent way. We present strong evidence for a replicon correlator and for overlap equivalence. The emerging picture is compatible with noncoarsening behavior.

Partial AZFc deletions in infertile men with cryptorchidism.

BACKGROUND: A specific type of partial AZFc deletion, called 'gr/gr' deletion, was recently proposed as genetic risk factor for spermatogenic impairment and testis cancer. Since both pathologies can be part of the testicular dysgenesis syndrome (TDS), we aimed to define the role of 'gr/gr' deletion in the aethiopathogenesis of another component of the TDS: cryptorchidism. METHODS: A total of 146 cryptorchid and 140 infertile patients without a history of cryptorchidism were screened with a sequence tagged site plus/minus method and further confirmed and characterized by CDY1/DAZ gene dosage and copy analysis. RESULTS: The observed deletion frequency was 4.2% in cryptorchid and 5% in non-cryptorchid patients. Moreover, no differences in the CDY1/DAZ patterns were observed among the two groups. A significant difference in deletion frequency was present only when cryptorchid patients were compared with normospermic controls (P < 0.03). CONCLUSIONS: Our data show no relationship between 'gr/gr' deletion and cryptorchidism, however, provide further evidence of the deleterious effect of the 'gr/gr' deletion on spermatogenesis. The screening for 'gr/gr' deletion may therefore be proposed before ICSI to all patients with severe male factor infertility, without the exclusion of those with cryptrochidism, since this genetic risk factor for spermatogenic impairment will be transmitted to the male offspring.

Inferring DNA sequences from mechanical unzipping data: the large-bandwidth case.

The complementary strands of DNA molecules can be separated when stretched apart by a force; the unzipping signal is correlated to the base content of the sequence but is affected by thermal and instrumental noise. We consider here the ideal case where opening events are known to a very good time resolution (very large bandwidth), and study how the sequence can be reconstructed from the unzipping data. Our approach relies on the use of statistical Bayesian inference and of Viterbi decoding algorithm. Performances are studied numerically on Monte Carlo generated data, and analytically. We show how multiple unzippings of the same molecule may be exploited to improve the quality of the prediction, and calculate analytically the number of required unzippings as a function of the bandwidth, the sequence content, and the elasticity parameters of the unzipped strands.

Strong universality and algebraic scaling in two-dimensional Ising spin glasses.

At zero temperature, two-dimensional Ising spin glasses are known to fall into several universality classes. Here we consider the scaling at low but nonzero temperatures and provide numerical evidence that eta approximately equal 0 and nu approximately equal 3.5 in all cases, suggesting a unique universality class. This algebraic (as opposed to exponential) scaling holds, in particular, for the +/- J model, with or without dilutions, and for the plaquette diluted model. Such a picture, associated with an exceptional behavior at T = 0, is consistent with a real space renormalization group approach. We also explain how the scaling of the specific heat is compatible with the hyperscaling prediction.

Inference of DNA sequences from mechanical unzipping: an ideal-case study.

The performances of Bayesian inference to predict the sequence of DNA molecules from fixed-force unzipping experiments are investigated. We show that the probability of misprediction decreases exponentially with the amount of collected data. The decay rate is calculated as a function of biochemical parameters (binding free energies), the sequence content, the applied force, the elastic properties of a DNA single strand, and time resolution.

Low T scaling in the binary 2d spin glass.

We investigate 2d Ising spin glasses with binary couplings via exact computations of the partition function on lattices with periodic boundary conditions. After introducing the physical issues, we sketch the algorithm to compute the partition function as a polynomial with integer coefficients. This technique is then exploited to obtain the thermodynamic properties of the spin glass. We find an anomalous low temperature scaling of the heat capacity c(v) approximately e(-2beta) and that hyperscaling holds.

Critical thermodynamics of the two-dimensional +/-J Ising spin glass.

We compute the exact partition function of 2d Ising spin glasses with binary couplings. In these systems, the ground state is highly degenerate and is separated from the first excited state by a gap of size 4J. Nevertheless, we find that the low temperature specific heat density scales as exp(-2J/T), corresponding to an "effective" gap of size 2J; in addition, an associated crossover length scale grows as exp(J/T). We justify these scalings via the degeneracy of the low lying excitations and by the way low energy domain walls proliferate in this model.

Scalings of domain wall energies in two dimensional Ising spin glasses.

We study domain wall energies of two dimensional spin glasses. The scaling of these energies depends on the model's distribution of quenched random couplings, falling into three different classes. The first class is associated with the exponent theta approximately -0.28; the other two classes have theta=0, as can be justified theoretically. In contrast to previous claims, we find that theta=0 does not indicate d=d(c)(l) but rather d< or =d(c)(l), where d(c)(l) is the lower critical dimension.

Width distributions and the upper critical dimension of Kardar-Parisi-Zhang interfaces.

Simulations of restricted solid-on-solid growth models are used to build the width distributions of d=2-5 dimensional Kardar-Parisi-Zhang (KPZ) interfaces. We find that the universal scaling function associated with the steady-state width distribution changes smoothly as d is increased, thus strongly suggesting that d=4 is not an upper critical dimension for the KPZ equation. The dimensional trends observed in the scaling functions indicate that the upper critical dimension is at infinity.

Zero-temperature responses of a 3D spin glass in a magnetic field.

We probe the energy landscape of the 3D Edwards-Anderson spin glass in a magnetic field to test for a spin glass ordering. We find that the spin glass susceptibility is anomalously large on the lattice sizes we can reach. Our data suggest that a transition from the spin glass to the paramagnetic phase takes place at B(c) approximately 0.65, though the possibility B(c) = 0 cannot be excluded. We also discuss the question of the nature of the putative frozen phase.

Effects of a bulk perturbation on the ground state of 3D Ising spin glasses.

We compute and analyze couples of ground states of 3D spin glasses before and after applying a volume perturbation which adds to the Hamiltonian a repulsion from the true ground state. The physical picture based on replica symmetry breaking is in excellent agreement with the observed behavior.