Search | VHL CLAP/WR-PAHO/WHO

1.

Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population.

Wu, Yibo; Williams, Evan G; Dubuis, Sébastien; Mottis, Adrienne; Jovaisaite, Virginija; Houten, Sander M; Argmann, Carmen A; Faridi, Pouya; Wolski, Witold; Kutalik, Zoltán; Zamboni, Nicola; Auwerx, Johan; Aebersold, Ruedi.

Cell ; 158(6): 1415-1430, 2014 Sep 11.

Article in English | MEDLINE | ID: mdl-25215496

2.

New driver for lipid synthesis.

Houten, Sander M; Argmann, Carmen A.

Cell ; 147(4): 719-21, 2011 Nov 11.

Article in English | MEDLINE | ID: mdl-22078872

3.

Stratification of risk of progression to colectomy in ulcerative colitis via measured and predicted gene expression.

Mo, Angela; Nagpal, Sini; Gettler, Kyle; Haritunians, Talin; Giri, Mamta; Haberman, Yael; Karns, Rebekah; Prince, Jarod; Arafat, Dalia; Hsu, Nai-Yun; Chuang, Ling-Shiang; Argmann, Carmen; Kasarskis, Andrew; Suarez-Farinas, Mayte; Gotman, Nathan; Mengesha, Emebet; Venkateswaran, Suresh; Rufo, Paul A; Baker, Susan S; Sauer, Cary G; Markowitz, James; Pfefferkorn, Marian D; Rosh, Joel R; Boyle, Brendan M; Mack, David R; Baldassano, Robert N; Shah, Sapana; LeLeiko, Neal S; Heyman, Melvin B; Griffiths, Anne M; Patel, Ashish S; Noe, Joshua D; Davis Thomas, Sonia; Aronow, Bruce J; Walters, Thomas D; McGovern, Dermot P B; Hyams, Jeffrey S; Kugathasan, Subra; Cho, Judy H; Denson, Lee A; Gibson, Greg.

Am J Hum Genet ; 108(9): 1765-1779, 2021 09 02.

Article in English | MEDLINE | ID: mdl-34450030

4.

NOX1 is essential for TNFα-induced intestinal epithelial ROS secretion and inhibits M cell signatures.

Hsu, Nai-Yun; Nayar, Shikha; Gettler, Kyle; Talware, Sayali; Giri, Mamta; Alter, Isaac; Argmann, Carmen; Sabic, Ksenija; Thin, Tin Htwe; Ko, Huai-Bin Mabel; Werner, Robert; Tastad, Christopher; Stappenbeck, Thaddeus; Azabdaftari, Aline; Uhlig, Holm H; Chuang, Ling-Shiang; Cho, Judy H.

Gut ; 72(4): 654-662, 2023 04.

Article in English | MEDLINE | ID: mdl-36191961

5.

Biopsy and blood-based molecular biomarker of inflammation in IBD.

Argmann, Carmen; Hou, Ruixue; Ungaro, Ryan C; Irizar, Haritz; Al-Taie, Zainab; Huang, Ruiqi; Kosoy, Roman; Venkat, Swati; Song, Won-Min; Di'Narzo, Antonio F; Losic, Bojan; Hao, Ke; Peters, Lauren; Comella, Phillip H; Wei, Gabrielle; Atreja, Ashish; Mahajan, Milind; Iuga, Alina; Desai, Prerak T; Branigan, Patrick; Stojmirovic, Aleksandar; Perrigoue, Jacqueline; Brodmerkel, Carrie; Curran, Mark; Friedman, Joshua R; Hart, Amy; Lamousé-Smith, Esi; Wehkamp, Jan; Mehandru, Saurabh; Schadt, Eric E; Sands, Bruce E; Dubinsky, Marla C; Colombel, Jean-Frederic; Kasarskis, Andrew; Suárez-Fariñas, Mayte.

Gut ; 72(7): 1271-1287, 2023 07.

Article in English | MEDLINE | ID: mdl-36109152

6.

Polygenic risk score for alcohol drinking behavior improves prediction of inflammatory bowel disease risk.

Di Narzo, Antonio F; Hart, Amy; Kosoy, Roman; Peters, Lauren; Stojmirovic, Aleksandar; Cheng, Haoxiang; Zhang, Zhongyang; Shan, Mingxu; Cho, Judy; Kasarskis, Andrew; Argmann, Carmen; Peter, Inga; Schadt, Eric E; Hao, Ke.

Hum Mol Genet ; 30(6): 514-523, 2021 04 30.

Article in English | MEDLINE | ID: mdl-33601420

7.

Integrative Analysis of the Inflammatory Bowel Disease Serum Metabolome Improves Our Understanding of Genetic Etiology and Points to Novel Putative Therapeutic Targets.

Di'Narzo, Antonio F; Houten, Sander M; Kosoy, Roman; Huang, Ruiqi; Vaz, Frédéric M; Hou, Ruixue; Wei, Gabrielle; Wang, Wenhui; Comella, Phillip H; Dodatko, Tetyana; Rogatsky, Eduard; Stojmirovic, Aleksandar; Brodmerkel, Carrie; Perrigoue, Jacqueline; Hart, Amy; Curran, Mark; Friedman, Joshua R; Zhu, Jun; Agrawal, Manasi; Cho, Judy; Ungaro, Ryan; Dubinsky, Marla C; Sands, Bruce E; Suárez-Fariñas, Mayte; Schadt, Eric E; Colombel, Jean-Frédéric; Kasarskis, Andrew; Hao, Ke; Argmann, Carmen.

Gastroenterology ; 162(3): 828-843.e11, 2022 03.

Article in English | MEDLINE | ID: mdl-34780722

8.

An Integrated Taxonomy for Monogenic Inflammatory Bowel Disease.

Bolton, Chrissy; Smillie, Christopher S; Pandey, Sumeet; Elmentaite, Rasa; Wei, Gabrielle; Argmann, Carmen; Aschenbrenner, Dominik; James, Kylie R; McGovern, Dermot P B; Macchi, Marina; Cho, Judy; Shouval, Dror S; Kammermeier, Jochen; Koletzko, Sibylle; Bagalopal, Krithika; Capitani, Melania; Cavounidis, Athena; Pires, Elisabete; Weidinger, Carl; McCullagh, James; Arkwright, Peter D; Haller, Wolfram; Siegmund, Britta; Peters, Lauren; Jostins, Luke; Travis, Simon P L; Anderson, Carl A; Snapper, Scott; Klein, Christoph; Schadt, Eric; Zilbauer, Matthias; Xavier, Ramnik; Teichmann, Sarah; Muise, Aleixo M; Regev, Aviv; Uhlig, Holm H.

Gastroenterology ; 162(3): 859-876, 2022 03.

Article in English | MEDLINE | ID: mdl-34780721

9.

Molecular Characterization of Limited Ulcerative Colitis Reveals Novel Biology and Predictors of Disease Extension.

Argmann, Carmen; Tokuyama, Minami; Ungaro, Ryan C; Huang, Ruiqi; Hou, Ruixue; Gurunathan, Sakteesh; Kosoy, Roman; Di'Narzo, Antonio; Wang, Wenhui; Losic, Bojan; Irizar, Haritz; Peters, Lauren; Stojmirovic, Aleksandar; Wei, Gabrielle; Comella, Phillip H; Curran, Mark; Brodmerkel, Carrie; Friedman, Joshua R; Hao, Ke; Schadt, Eric E; Zhu, Jun; Cho, Judy; Harpaz, Noam; Dubinsky, Marla C; Sands, Bruce E; Kasarskis, Andrew; Mehandru, Saurabh; Colombel, Jean-Frederic; Suárez-Fariñas, Mayte.

Gastroenterology ; 161(6): 1953-1968.e15, 2021 12.

Article in English | MEDLINE | ID: mdl-34480882

10.

Intestinal Inflammation Modulates the Expression of ACE2 and TMPRSS2 and Potentially Overlaps With the Pathogenesis of SARS-CoV-2-related Disease.

Suárez-Fariñas, Mayte; Tokuyama, Minami; Wei, Gabrielle; Huang, Ruiqi; Livanos, Alexandra; Jha, Divya; Levescot, Anais; Irizar, Haritz; Kosoy, Roman; Cording, Sascha; Wang, Wenhui; Losic, Bojan; Ungaro, Ryan C; Di'Narzo, Antonio; Martinez-Delgado, Gustavo; Suprun, Maria; Corley, Michael J; Stojmirovic, Aleksandar; Houten, Sander M; Peters, Lauren; Curran, Mark; Brodmerkel, Carrie; Perrigoue, Jacqueline; Friedman, Joshua R; Hao, Ke; Schadt, Eric E; Zhu, Jun; Ko, Huaibin M; Cho, Judy; Dubinsky, Marla C; Sands, Bruce E; Ndhlovu, Lishomwa; Cerf-Bensusan, Nadine; Kasarskis, Andrew; Colombel, Jean-Frederic; Harpaz, Noam; Argmann, Carmen; Mehandru, Saurabh.

Gastroenterology ; 160(1): 287-301.e20, 2021 01.

Article in English | MEDLINE | ID: mdl-32980345

11.

Intestinal Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients With Gastrointestinal Symptoms.

Livanos, Alexandra E; Jha, Divya; Cossarini, Francesca; Gonzalez-Reiche, Ana S; Tokuyama, Minami; Aydillo, Teresa; Parigi, Tommaso L; Ladinsky, Mark S; Ramos, Irene; Dunleavy, Katie; Lee, Brian; Dixon, Rebekah E; Chen, Steven T; Martinez-Delgado, Gustavo; Nagula, Satish; Bruce, Emily A; Ko, Huaibin M; Glicksberg, Benjamin S; Nadkarni, Girish; Pujadas, Elisabet; Reidy, Jason; Naymagon, Steven; Grinspan, Ari; Ahmad, Jawad; Tankelevich, Michael; Bram, Yaron; Gordon, Ronald; Sharma, Keshav; Houldsworth, Jane; Britton, Graham J; Chen-Liaw, Alice; Spindler, Matthew P; Plitt, Tamar; Wang, Pei; Cerutti, Andrea; Faith, Jeremiah J; Colombel, Jean-Frederic; Kenigsberg, Ephraim; Argmann, Carmen; Merad, Miriam; Gnjatic, Sacha; Harpaz, Noam; Danese, Silvio; Cordon-Cardo, Carlos; Rahman, Adeeb; Schwartz, Robert E; Kumta, Nikhil A; Aghemo, Alessio; Bjorkman, Pamela J; Petralia, Francesca.

Gastroenterology ; 160(7): 2435-2450.e34, 2021 06.

Article in English | MEDLINE | ID: mdl-33676971

12.

Murine deficiency of peroxisomal L-bifunctional protein (EHHADH) causes medium-chain 3-hydroxydicarboxylic aciduria and perturbs hepatic cholesterol homeostasis.

Ranea-Robles, Pablo; Violante, Sara; Argmann, Carmen; Dodatko, Tetyana; Bhattacharya, Dipankar; Chen, Hongjie; Yu, Chunli; Friedman, Scott L; Puchowicz, Michelle; Houten, Sander M.

Cell Mol Life Sci ; 78(14): 5631-5646, 2021 Jul.

Article in English | MEDLINE | ID: mdl-34110423

13.

Meta-analysis of sample-level dbGaP data reveals novel shared genetic link between body height and Crohn's disease.

Di Narzo, Antonio; Frades, Itziar; Crane, Heidi M; Crane, Paul K; Hulot, Jean-Sebastian; Kasarskis, Andrew; Hart, Amy; Argmann, Carmen; Dubinsky, Marla; Peter, Inga; Hao, Ke.

Hum Genet ; 140(6): 865-877, 2021 Jun.

Article in English | MEDLINE | ID: mdl-33452914

14.

Glutaric aciduria type 3 is a naturally occurring biochemical trait in inbred mice of 129 substrains.

Leandro, João; Bender, Aaron; Dodatko, Tetyana; Argmann, Carmen; Yu, Chunli; Houten, Sander M.

Mol Genet Metab ; 132(2): 139-145, 2021 02.

Article in English | MEDLINE | ID: mdl-33483254

15.

Peroxisomes can oxidize medium- and long-chain fatty acids through a pathway involving ABCD3 and HSD17B4.

Violante, Sara; Achetib, Nihad; van Roermund, Carlo W T; Hagen, Jacob; Dodatko, Tetyana; Vaz, Frédéric M; Waterham, Hans R; Chen, Hongjie; Baes, Myriam; Yu, Chunli; Argmann, Carmen A; Houten, Sander M.

FASEB J ; 33(3): 4355-4364, 2019 03.

Article in English | MEDLINE | ID: mdl-30540494

16.

High-Throughput Characterization of Blood Serum Proteomics of IBD Patients with Respect to Aging and Genetic Factors.

Di Narzo, Antonio F; Telesco, Shannon E; Brodmerkel, Carrie; Argmann, Carmen; Peters, Lauren A; Li, Katherine; Kidd, Brian; Dudley, Joel; Cho, Judy; Schadt, Eric E; Kasarskis, Andrew; Dobrin, Radu; Hao, Ke.

PLoS Genet ; 13(1): e1006565, 2017 01.

Article in English | MEDLINE | ID: mdl-28129359

17.

Mild inborn errors of metabolism in commonly used inbred mouse strains.

Leandro, João; Violante, Sara; Argmann, Carmen A; Hagen, Jacob; Dodatko, Tetyana; Bender, Aaron; Zhang, Wei; Williams, Evan G; Bachmann, Alexis M; Auwerx, Johan; Yu, Chunli; Houten, Sander M.

Mol Genet Metab ; 126(4): 388-396, 2019 04.

Article in English | MEDLINE | ID: mdl-30709776

18.

Integrative analysis of DNA methylation and gene expression data identifies EPAS1 as a key regulator of COPD.

Yoo, Seungyeul; Takikawa, Sachiko; Geraghty, Patrick; Argmann, Carmen; Campbell, Joshua; Lin, Luan; Huang, Tao; Tu, Zhidong; Foronjy, Robert F; Feronjy, Robert; Spira, Avrum; Schadt, Eric E; Powell, Charles A; Zhu, Jun.

PLoS Genet ; 11(1): e1004898, 2015 Jan.

Article in English | MEDLINE | ID: mdl-25569234

19.

A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells.

Yang, Jialiang; Hagen, Jacob; Guntur, Kalyani V; Allette, Kimaada; Schuyler, Sarah; Ranjan, Jyoti; Petralia, Francesca; Gesta, Stephane; Sebra, Robert; Mahajan, Milind; Zhang, Bin; Zhu, Jun; Houten, Sander; Kasarskis, Andrew; Vishnudas, Vivek K; Akmaev, Viatcheslav R; Sarangarajan, Rangaprasad; Narain, Niven R; Schadt, Eric E; Argmann, Carmen A; Tu, Zhidong.

BMC Genomics ; 18(1): 987, 2017 12 22.

Article in English | MEDLINE | ID: mdl-29273013

20.

Germline deletion of Krüppel-like factor 14 does not increase risk of diet induced metabolic syndrome in male C57BL/6 mice.

Argmann, Carmen A; Violante, Sara; Dodatko, Tetyana; Amaro, Mariana P; Hagen, Jacob; Gillespie, Virginia L; Buettner, Christoph; Schadt, Eric E; Houten, Sander M.

Biochim Biophys Acta Mol Basis Dis ; 1863(12): 3277-3285, 2017 12.

Article in English | MEDLINE | ID: mdl-28962896

VHL CLAP/WR-PAHO/WHO

Latin-American Center for Perinatology, Woman and Reproductive Health

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