Search details
1.
Amphioxus functional genomics and the origins of vertebrate gene regulation.
Nature
; 564(7734): 64-70, 2018 12.
Article
in English
| MEDLINE | ID: mdl-30464347
2.
A promoter-level mammalian expression atlas.
Nature
; 507(7493): 462-70, 2014 Mar 27.
Article
in English
| MEDLINE | ID: mdl-24670764
3.
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs.
Genome Res
; 24(5): 869-84, 2014 May.
Article
in English
| MEDLINE | ID: mdl-24515121
4.
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting.
Genome Res
; 23(1): 60-73, 2013 Jan.
Article
in English
| MEDLINE | ID: mdl-22964890
5.
The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations.
Blood
; 123(17): e68-78, 2014 Apr 24.
Article
in English
| MEDLINE | ID: mdl-24671953
6.
Transcription and enhancer profiling in human monocyte subsets.
Blood
; 123(17): e90-9, 2014 Apr 24.
Article
in English
| MEDLINE | ID: mdl-24671955
7.
Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways.
Nucleic Acids Res
; 42(14): 9313-26, 2014 Aug.
Article
in English
| MEDLINE | ID: mdl-25030899
8.
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates.
Nucleic Acids Res
; 41(Database issue): D214-20, 2013 Jan.
Article
in English
| MEDLINE | ID: mdl-23180783
9.
Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium.
Breast Cancer Res
; 15(2): R36, 2013 Apr 29.
Article
in English
| MEDLINE | ID: mdl-23621987
10.
The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing.
Hum Mol Genet
; 19(7): 1153-64, 2010 Apr 01.
Article
in English
| MEDLINE | ID: mdl-20053671
11.
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
Nat Genet
; 54(7): 1037-1050, 2022 07.
Article
in English
| MEDLINE | ID: mdl-35789323
12.
Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome.
PLoS Pathog
; 5(8): e1000547, 2009 Aug.
Article
in English
| MEDLINE | ID: mdl-19680535
13.
Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics.
Sci Rep
; 11(1): 22717, 2021 11 22.
Article
in English
| MEDLINE | ID: mdl-34811400
14.
Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization.
Dev Cell
; 56(5): 641-656.e5, 2021 03 08.
Article
in English
| MEDLINE | ID: mdl-33651978
15.
Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming.
Cancer Cell
; 23(6): 768-83, 2013 Jun 10.
Article
in English
| MEDLINE | ID: mdl-23764001
16.
The corepressor NCoR1 antagonizes PGC-1α and estrogen-related receptor α in the regulation of skeletal muscle function and oxidative metabolism.
Mol Cell Biol
; 32(24): 4913-24, 2012 Dec.
Article
in English
| MEDLINE | ID: mdl-23028049
17.
Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop.
Nat Med
; 18(4): 529-37, 2012 Mar 04.
Article
in English
| MEDLINE | ID: mdl-22388088
18.
Adipose tissue microRNAs as regulators of CCL2 production in human obesity.
Diabetes
; 61(8): 1986-93, 2012 Aug.
Article
in English
| MEDLINE | ID: mdl-22688341
19.
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.
Genome Biol
; 10(7): R79, 2009.
Article
in English
| MEDLINE | ID: mdl-19624849
20.
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.
Genome Biol
; 10(4): R39, 2009.
Article
in English
| MEDLINE | ID: mdl-19374773