Search details
1.
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation.
Bioinformatics
; 38(8): 2350-2352, 2022 04 12.
Article
in English
| MEDLINE | ID: mdl-35139153
2.
Relative Time Constraints Improve Molecular Dating.
Syst Biol
; 71(4): 797-809, 2022 06 16.
Article
in English
| MEDLINE | ID: mdl-34668564
3.
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.
Bioinformatics
; 36(18): 4822-4824, 2020 09 15.
Article
in English
| MEDLINE | ID: mdl-33085745
4.
Ecological networks to unravel the routes to horizontal transposon transfers.
PLoS Biol
; 15(2): e2001536, 2017 02.
Article
in English
| MEDLINE | ID: mdl-28199335
5.
RecPhyloXML: a format for reconciled gene trees.
Bioinformatics
; 34(21): 3646-3652, 2018 11 01.
Article
in English
| MEDLINE | ID: mdl-29762653
6.
Phylogenetic reconciliation.
PLoS Comput Biol
; 18(11): e1010621, 2022 11.
Article
in English
| MEDLINE | ID: mdl-36327227
7.
GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands.
PLoS Genet
; 11(2): e1004941, 2015 Feb.
Article
in English
| MEDLINE | ID: mdl-25659072
8.
Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated.
Mol Biol Evol
; 33(2): 305-10, 2016 Feb.
Article
in English
| MEDLINE | ID: mdl-26541173
9.
Genome-scale coestimation of species and gene trees.
Genome Res
; 23(2): 323-30, 2013 Feb.
Article
in English
| MEDLINE | ID: mdl-23132911
10.
The inference of gene trees with species trees.
Syst Biol
; 64(1): e42-62, 2015 Jan.
Article
in English
| MEDLINE | ID: mdl-25070970
11.
Reconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequence.
BMC Genomics
; 16 Suppl 10: S9, 2015.
Article
in English
| MEDLINE | ID: mdl-26450112
12.
A Bayesian method for analyzing lateral gene transfer.
Syst Biol
; 63(3): 409-20, 2014 May.
Article
in English
| MEDLINE | ID: mdl-24562812
13.
Lateral gene transfer as a support for the tree of life.
Proc Natl Acad Sci U S A
; 109(13): 4962-7, 2012 Mar 27.
Article
in English
| MEDLINE | ID: mdl-22416123
14.
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations.
Proc Natl Acad Sci U S A
; 109(43): 17513-8, 2012 Oct 23.
Article
in English
| MEDLINE | ID: mdl-23043116
15.
Ribosomal proteins: toward a next generation standard for prokaryotic systematics?
Mol Phylogenet Evol
; 75: 103-17, 2014 Jun.
Article
in English
| MEDLINE | ID: mdl-24583288
16.
Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid.
Mol Phylogenet Evol
; 73: 202-7, 2014 Apr.
Article
in English
| MEDLINE | ID: mdl-24440816
17.
Lateral gene transfer from the dead.
Syst Biol
; 62(3): 386-97, 2013 May 01.
Article
in English
| MEDLINE | ID: mdl-23355531
18.
Efficient exploration of the space of reconciled gene trees.
Syst Biol
; 62(6): 901-12, 2013 Nov.
Article
in English
| MEDLINE | ID: mdl-23925510
19.
Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov.
Int J Syst Evol Microbiol
; 64(Pt 11): 3821-3832, 2014 Nov.
Article
in English
| MEDLINE | ID: mdl-25168610
20.
Proteome allocation and the evolution of metabolic cross-feeding.
Evolution
; 78(5): 849-859, 2024 May 01.
Article
in English
| MEDLINE | ID: mdl-38376478