Search details
1.
Determination and inference of eukaryotic transcription factor sequence specificity.
Cell
; 158(6): 1431-1443, 2014 Sep 11.
Article
in English
| MEDLINE | ID: mdl-25215497
2.
RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer.
Nature
; 513(7516): 65-70, 2014 Sep 04.
Article
in English
| MEDLINE | ID: mdl-25079319
3.
Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.
Plant Cell
; 28(11): 2715-2734, 2016 11.
Article
in English
| MEDLINE | ID: mdl-27803310
4.
RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints.
Bioinformatics
; 33(1): 139-141, 2017 01 01.
Article
in English
| MEDLINE | ID: mdl-27634950
5.
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Nature
; 477(7365): 419-23, 2011 Aug 28.
Article
in English
| MEDLINE | ID: mdl-21874022
6.
Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome.
Plant Cell
; 25(10): 3726-42, 2013 Oct.
Article
in English
| MEDLINE | ID: mdl-24163313
7.
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.
Bioinformatics
; 30(9): 1300-1, 2014 May 01.
Article
in English
| MEDLINE | ID: mdl-24413671
8.
Accurate detection of differential RNA processing.
Nucleic Acids Res
; 41(10): 5189-98, 2013 May 01.
Article
in English
| MEDLINE | ID: mdl-23585274
9.
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples.
Bioinformatics
; 29(20): 2529-38, 2013 Oct 15.
Article
in English
| MEDLINE | ID: mdl-23980025
10.
Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes.
RNA Biol
; 9(5): 596-609, 2012 May.
Article
in English
| MEDLINE | ID: mdl-22614838
11.
Spatio-temporal mRNA tracking in the early zebrafish embryo.
Nat Commun
; 12(1): 3358, 2021 06 07.
Article
in English
| MEDLINE | ID: mdl-34099733
12.
CSEQ-SIMULATOR: A DATA SIMULATOR FOR CLIP-SEQ EXPERIMENTS.
Pac Symp Biocomput
; 21: 433-44, 2016.
Article
in English
| MEDLINE | ID: mdl-26776207
13.
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.
Elife
; 4: e05255, 2015 May 05.
Article
in English
| MEDLINE | ID: mdl-25939354
14.
Graph-regularized 3D shape reconstruction from highly anisotropic and noisy images.
Signal Image Video Process
; 8(1 Suppl): 41-48, 2014 Dec 01.
Article
in English
| MEDLINE | ID: mdl-25866587
15.
Determinants of robustness in spindle assembly checkpoint signalling.
Nat Cell Biol
; 15(11): 1328-39, 2013 Nov.
Article
in English
| MEDLINE | ID: mdl-24161933
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