Search details
1.
Chromatin gene-gene loops support the cross-regulation of genes with related function.
Mol Cell
; 84(5): 822-838.e8, 2024 Mar 07.
Article
in English
| MEDLINE | ID: mdl-38157845
2.
A transcription factor collective defines cardiac cell fate and reflects lineage history.
Cell
; 148(3): 473-86, 2012 Feb 03.
Article
in English
| MEDLINE | ID: mdl-22304916
3.
Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements.
Genes Dev
; 31(6): 590-602, 2017 03 15.
Article
in English
| MEDLINE | ID: mdl-28381411
4.
The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection.
Genome Res
; 31(9): 1573-1581, 2021 09.
Article
in English
| MEDLINE | ID: mdl-34266978
5.
Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins.
Mol Cell
; 64(3): 624-635, 2016 11 03.
Article
in English
| MEDLINE | ID: mdl-27773674
6.
A conserved role for Snail as a potentiator of active transcription.
Genes Dev
; 28(2): 167-81, 2014 Jan 15.
Article
in English
| MEDLINE | ID: mdl-24402316
7.
Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network.
Development
; 143(23): 4533-4542, 2016 12 01.
Article
in English
| MEDLINE | ID: mdl-27899510
8.
Opbp is a new architectural/insulator protein required for ribosomal gene expression.
Nucleic Acids Res
; 45(21): 12285-12300, 2017 Dec 01.
Article
in English
| MEDLINE | ID: mdl-29036346
9.
Dynamix: dynamic visualization by automatic selection of informative tracks from hundreds of genomic datasets.
Bioinformatics
; 33(14): 2194-2196, 2017 Jul 15.
Article
in English
| MEDLINE | ID: mdl-28334301
10.
Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis.
Development
; 141(13): 2633-43, 2014 Jul.
Article
in English
| MEDLINE | ID: mdl-24961800
11.
Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes.
PLoS Comput Biol
; 12(9): e1005073, 2016 09.
Article
in English
| MEDLINE | ID: mdl-27599298
12.
Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity.
PLoS Genet
; 10(1): e1004060, 2014 Jan.
Article
in English
| MEDLINE | ID: mdl-24391522
13.
Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers.
BMC Bioinformatics
; 17(1): 419, 2016 Oct 08.
Article
in English
| MEDLINE | ID: mdl-27717304
14.
Combinatorial binding predicts spatio-temporal cis-regulatory activity.
Nature
; 462(7269): 65-70, 2009 Nov 05.
Article
in English
| MEDLINE | ID: mdl-19890324
15.
Model-based method for transcription factor target identification with limited data.
Proc Natl Acad Sci U S A
; 107(17): 7793-8, 2010 Apr 27.
Article
in English
| MEDLINE | ID: mdl-20385836
16.
CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early Drosophila embryos but have locus-specific roles.
Sci Adv
; 9(5): eade1085, 2023 02 03.
Article
in English
| MEDLINE | ID: mdl-36735786
17.
A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals.
Cell Stem Cell
; 30(7): 938-949.e7, 2023 07 06.
Article
in English
| MEDLINE | ID: mdl-37343565
18.
4DXpress: a database for cross-species expression pattern comparisons.
Nucleic Acids Res
; 36(Database issue): D847-53, 2008 Jan.
Article
in English
| MEDLINE | ID: mdl-17916571
19.
Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis.
Dev Cell
; 55(5): 648-664.e9, 2020 12 07.
Article
in English
| MEDLINE | ID: mdl-33171098
20.
The Role of Chromatin Accessibility in cis-Regulatory Evolution.
Genome Biol Evol
; 11(7): 1813-1828, 2019 07 01.
Article
in English
| MEDLINE | ID: mdl-31114856