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1.
Best practices for single-cell analysis across modalities.
Nat Rev Genet
; 24(8): 550-572, 2023 08.
Article
in English
| MEDLINE | ID: mdl-37002403
2.
mlf-core: a framework for deterministic machine learning.
Bioinformatics
; 39(4)2023 04 03.
Article
in English
| MEDLINE | ID: mdl-37004171
3.
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data.
Nat Methods
; 21(3): 365-367, 2024 Mar.
Article
in English
| MEDLINE | ID: mdl-38366242
4.
MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics.
J Proteome Res
; 18(11): 3876-3884, 2019 11 01.
Article
in English
| MEDLINE | ID: mdl-31589052
5.
The AIMe registry for artificial intelligence in biomedical research.
Nat Methods
; 18(10): 1128-1131, 2021 10.
Article
in English
| MEDLINE | ID: mdl-34433960
6.
hadge: a comprehensive pipeline for donor deconvolution in single-cell studies.
Genome Biol
; 25(1): 109, 2024 Apr 26.
Article
in English
| MEDLINE | ID: mdl-38671451
7.
Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis.
Sci Transl Med
; 15(725): eadh0908, 2023 12 06.
Article
in English
| MEDLINE | ID: mdl-38055803
8.
An integrated cell atlas of the lung in health and disease.
Nat Med
; 29(6): 1563-1577, 2023 Jun.
Article
in English
| MEDLINE | ID: mdl-37291214
9.
A Mutation-Agnostic Hematopoietic Stem Cell Gene Therapy for Metachromatic Leukodystrophy.
CRISPR J
; 5(1): 66-79, 2022 02.
Article
in English
| MEDLINE | ID: mdl-34882002
10.
Sfaira accelerates data and model reuse in single cell genomics.
Genome Biol
; 22(1): 248, 2021 08 25.
Article
in English
| MEDLINE | ID: mdl-34433466
11.
Universal Gene Correction Approaches for ß-hemoglobinopathies Using CRISPR-Cas9 and Adeno-Associated Virus Serotype 6 Donor Templates.
CRISPR J
; 4(2): 207-222, 2021 04.
Article
in English
| MEDLINE | ID: mdl-33876951
12.
Comparative targeting analysis of KLF1, BCL11A, and HBG1/2 in CD34+ HSPCs by CRISPR/Cas9 for the induction of fetal hemoglobin.
Sci Rep
; 10(1): 10133, 2020 06 23.
Article
in English
| MEDLINE | ID: mdl-32576837
13.
The scverse project provides a computational ecosystem for single-cell omics data analysis.
Nat Biotechnol
; 41(5): 604-606, 2023 05.
Article
in English
| MEDLINE | ID: mdl-37037904
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