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1.
mCNN-ETC: identifying electron transporters and their functional families by using multiple windows scanning techniques in convolutional neural networks with evolutionary information of protein sequences.
Brief Bioinform
; 23(1)2022 01 17.
Article
in English
| MEDLINE | ID: mdl-34472594
2.
Recent advances in features generation for membrane protein sequences: From multiple sequence alignment to pre-trained language models.
Proteomics
; 23(23-24): e2200494, 2023 Dec.
Article
in English
| MEDLINE | ID: mdl-37863817
3.
A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information.
Brief Bioinform
; 22(5)2021 09 02.
Article
in English
| MEDLINE | ID: mdl-33539511
4.
Automatic Detection of Meniscus Tears Using Backbone Convolutional Neural Networks on Knee MRI.
J Magn Reson Imaging
; 57(3): 740-749, 2023 03.
Article
in English
| MEDLINE | ID: mdl-35648374
5.
Deep transformers and convolutional neural network in identifying DNA N6-methyladenine sites in cross-species genomes.
Methods
; 204: 199-206, 2022 08.
Article
in English
| MEDLINE | ID: mdl-34915158
6.
Using multiple convolutional window scanning of convolutional neural network for an efficient prediction of ATP-binding sites in transport proteins.
Proteins
; 90(7): 1486-1492, 2022 07.
Article
in English
| MEDLINE | ID: mdl-35246878
7.
Identifying SNARE Proteins Using an Alignment-Free Method Based on Multiscan Convolutional Neural Network and PSSM Profiles.
J Chem Inf Model
; 62(19): 4820-4826, 2022 10 10.
Article
in English
| MEDLINE | ID: mdl-36166351
8.
Using word embedding technique to efficiently represent protein sequences for identifying substrate specificities of transporters.
Anal Biochem
; 577: 73-81, 2019 07 15.
Article
in English
| MEDLINE | ID: mdl-31022378
9.
iEnhancer-5Step: Identifying enhancers using hidden information of DNA sequences via Chou's 5-step rule and word embedding.
Anal Biochem
; 571: 53-61, 2019 04 15.
Article
in English
| MEDLINE | ID: mdl-30822398
10.
Classifying the molecular functions of Rab GTPases in membrane trafficking using deep convolutional neural networks.
Anal Biochem
; 555: 33-41, 2018 08 15.
Article
in English
| MEDLINE | ID: mdl-29908156
11.
Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins.
J Comput Chem
; 38(23): 2000-2006, 2017 09 05.
Article
in English
| MEDLINE | ID: mdl-28643394
12.
BERT-Promoter: An improved sequence-based predictor of DNA promoter using BERT pre-trained model and SHAP feature selection.
Comput Biol Chem
; 99: 107732, 2022 Aug.
Article
in English
| MEDLINE | ID: mdl-35863177
13.
MFPS_CNN: Multi-filter Pattern Scanning from Position-specific Scoring Matrix with Convolutional Neural Network for Efficient Prediction of Ion Transporters.
Mol Inform
; 41(9): e2100271, 2022 09.
Article
in English
| MEDLINE | ID: mdl-35322557
14.
Use Chou's 5-Steps Rule With Different Word Embedding Types to Boost Performance of Electron Transport Protein Prediction Model.
IEEE/ACM Trans Comput Biol Bioinform
; 19(2): 1235-1244, 2022.
Article
in English
| MEDLINE | ID: mdl-32750894
15.
FAD-BERT: Improved prediction of FAD binding sites using pre-training of deep bidirectional transformers.
Comput Biol Med
; 131: 104258, 2021 04.
Article
in English
| MEDLINE | ID: mdl-33601085
16.
GT-Finder: Classify the family of glucose transporters with pre-trained BERT language models.
Comput Biol Med
; 131: 104259, 2021 04.
Article
in English
| MEDLINE | ID: mdl-33581474
17.
TNFPred: identifying tumor necrosis factors using hybrid features based on word embeddings.
BMC Med Genomics
; 13(Suppl 10): 155, 2020 10 22.
Article
in English
| MEDLINE | ID: mdl-33087125
18.
Using Language Representation Learning Approach to Efficiently Identify Protein Complex Categories in Electron Transport Chain.
Mol Inform
; 39(10): e2000033, 2020 10.
Article
in English
| MEDLINE | ID: mdl-32598045
19.
Using two-dimensional convolutional neural networks for identifying GTP binding sites in Rab proteins.
J Bioinform Comput Biol
; 17(1): 1950005, 2019 02.
Article
in English
| MEDLINE | ID: mdl-30866734
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