Search | VHL CLAP/WR-PAHO/WHO

1.

Shared Immunogenic Poly-Epitope Frameshift Mutations in Microsatellite Unstable Tumors.

Roudko, Vladimir; Bozkus, Cansu Cimen; Orfanelli, Theofano; McClain, Christopher B; Carr, Caitlin; O'Donnell, Timothy; Chakraborty, Lauren; Samstein, Robert; Huang, Kuan-Lin; Blank, Stephanie V; Greenbaum, Benjamin; Bhardwaj, Nina.

Cell ; 183(6): 1634-1649.e17, 2020 12 10.

Article in English | MEDLINE | ID: mdl-33259803

2.

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.

Ding, Li; Bailey, Matthew H; Porta-Pardo, Eduard; Thorsson, Vesteinn; Colaprico, Antonio; Bertrand, Denis; Gibbs, David L; Weerasinghe, Amila; Huang, Kuan-Lin; Tokheim, Collin; Cortés-Ciriano, Isidro; Jayasinghe, Reyka; Chen, Feng; Yu, Lihua; Sun, Sam; Olsen, Catharina; Kim, Jaegil; Taylor, Alison M; Cherniack, Andrew D; Akbani, Rehan; Suphavilai, Chayaporn; Nagarajan, Niranjan; Stuart, Joshua M; Mills, Gordon B; Wyczalkowski, Matthew A; Vincent, Benjamin G; Hutter, Carolyn M; Zenklusen, Jean Claude; Hoadley, Katherine A; Wendl, Michael C; Shmulevich, Llya; Lazar, Alexander J; Wheeler, David A; Getz, Gad.

Cell ; 173(2): 305-320.e10, 2018 04 05.

Article in English | MEDLINE | ID: mdl-29625049

3.

Pathogenic Germline Variants in 10,389 Adult Cancers.

Huang, Kuan-Lin; Mashl, R Jay; Wu, Yige; Ritter, Deborah I; Wang, Jiayin; Oh, Clara; Paczkowska, Marta; Reynolds, Sheila; Wyczalkowski, Matthew A; Oak, Ninad; Scott, Adam D; Krassowski, Michal; Cherniack, Andrew D; Houlahan, Kathleen E; Jayasinghe, Reyka; Wang, Liang-Bo; Zhou, Daniel Cui; Liu, Di; Cao, Song; Kim, Young Won; Koire, Amanda; McMichael, Joshua F; Hucthagowder, Vishwanathan; Kim, Tae-Beom; Hahn, Abigail; Wang, Chen; McLellan, Michael D; Al-Mulla, Fahd; Johnson, Kimberly J; Lichtarge, Olivier; Boutros, Paul C; Raphael, Benjamin; Lazar, Alexander J; Zhang, Wei; Wendl, Michael C; Govindan, Ramaswamy; Jain, Sanjay; Wheeler, David; Kulkarni, Shashikant; Dipersio, John F; Reimand, Jüri; Meric-Bernstam, Funda; Chen, Ken; Shmulevich, Ilya; Plon, Sharon E; Chen, Feng; Ding, Li.

Cell ; 173(2): 355-370.e14, 2018 04 05.

Article in English | MEDLINE | ID: mdl-29625052

4.

Using EGFR amplification to stratify recurrent glioblastoma treated with immune checkpoint inhibitors.

Friedman, Joshua S; Jun, Tomi; Rashidipour, Omid; Huang, Kuan-Lin; Ellis, Ethan; Kadaba, Priyanka; Belani, Puneet; Nael, Kambiz; Tsankova, Nadejda M; Sebra, Robert; Hormigo, Adília.

Cancer Immunol Immunother ; 72(6): 1893-1901, 2023 Jun.

Article in English | MEDLINE | ID: mdl-36707424

5.

Proteogenomics connects somatic mutations to signalling in breast cancer.

Mertins, Philipp; Mani, D R; Ruggles, Kelly V; Gillette, Michael A; Clauser, Karl R; Wang, Pei; Wang, Xianlong; Qiao, Jana W; Cao, Song; Petralia, Francesca; Kawaler, Emily; Mundt, Filip; Krug, Karsten; Tu, Zhidong; Lei, Jonathan T; Gatza, Michael L; Wilkerson, Matthew; Perou, Charles M; Yellapantula, Venkata; Huang, Kuan-lin; Lin, Chenwei; McLellan, Michael D; Yan, Ping; Davies, Sherri R; Townsend, R Reid; Skates, Steven J; Wang, Jing; Zhang, Bing; Kinsinger, Christopher R; Mesri, Mehdi; Rodriguez, Henry; Ding, Li; Paulovich, Amanda G; Fenyö, David; Ellis, Matthew J; Carr, Steven A.

Nature ; 534(7605): 55-62, 2016 06 02.

Article in English | MEDLINE | ID: mdl-27251275

6.

Functional analysis of BARD1 missense variants in homology-directed repair and damage sensitivity.

Adamovich, Aleksandra I; Banerjee, Tapahsama; Wingo, Margaret; Duncan, Kathryn; Ning, Jie; Martins Rodrigues, Fernanda; Huang, Kuan-Lin; Lee, Cindy; Chen, Feng; Ding, Li; Parvin, Jeffrey D.

PLoS Genet ; 15(3): e1008049, 2019 03.

Article in English | MEDLINE | ID: mdl-30925164

7.

Modeling COVID-19 dynamic using a two-strain model with vaccination.

de León, Ugo Avila-Ponce; Avila-Vales, Eric; Huang, Kuan-Lin.

Chaos Solitons Fractals ; 157: 111927, 2022 Apr.

Article in English | MEDLINE | ID: mdl-35185299

8.

Cooperation Between Distinct Cancer Driver Genes Underlies Intertumor Heterogeneity in Hepatocellular Carcinoma.

Molina-Sánchez, Pedro; Ruiz de Galarreta, Marina; Yao, Melissa A; Lindblad, Katherine E; Bresnahan, Erin; Bitterman, Elizabeth; Martin, Tiphaine C; Rubenstein, Troy; Nie, Kai; Golas, Jonathan; Choudhary, Shambhunath; Bárcena-Varela, Marina; Elmas, Abdulkadir; Miguela, Veronica; Ding, Ying; Kan, Zhengyan; Grinspan, Lauren Tal; Huang, Kuan-Lin; Parsons, Ramon E; Shields, David J; Rollins, Robert A; Lujambio, Amaia.

Gastroenterology ; 159(6): 2203-2220.e14, 2020 12.

Article in English | MEDLINE | ID: mdl-32814112

9.

Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability.

Huang, Kuan-Lin; Wu, Yige; Primeau, Tina; Wang, Yi-Ting; Gao, Yuqian; McMichael, Joshua F; Scott, Adam D; Cao, Song; Wendl, Michael C; Johnson, Kimberly J; Ruggles, Kelly; Held, Jason; Payne, Samuel H; Davies, Sherri; Dar, Arvin; Kinsinger, Christopher R; Mesri, Mehdi; Rodriguez, Henry; Ellis, Matthew J; Townsend, R Reid; Chen, Feng; Fenyö, David; Li, Shunqiang; Liu, Tao; Carr, Steven A; Ding, Li.

Mol Cell Proteomics ; 18(8): 1630-1650, 2019 08.

Article in English | MEDLINE | ID: mdl-31196969

10.

Genotype concordance and polygenic risk score estimation across consumer genetic testing data.

Batra, Prag; Huang, Kuan-Lin.

Ann Hum Genet ; 84(4): 352-356, 2020 07.

Article in English | MEDLINE | ID: mdl-32436989

11.

GenomeVIP: a cloud platform for genomic variant discovery and interpretation.

Mashl, R Jay; Scott, Adam D; Huang, Kuan-Lin; Wyczalkowski, Matthew A; Yoon, Christopher J; Niu, Beifang; DeNardo, Erin; Yellapantula, Venkata D; Handsaker, Robert E; Chen, Ken; Koboldt, Daniel C; Ye, Kai; Fenyö, David; Raphael, Benjamin J; Wendl, Michael C; Ding, Li.

Genome Res ; 27(8): 1450-1459, 2017 08.

Article in English | MEDLINE | ID: mdl-28522612

12.

CharGer: clinical Characterization of Germline variants.

Scott, Adam D; Huang, Kuan-Lin; Weerasinghe, Amila; Mashl, R Jay; Gao, Qingsong; Martins Rodrigues, Fernanda; Wyczalkowski, Matthew A; Ding, Li.

Bioinformatics ; 35(5): 865-867, 2019 03 01.

Article in English | MEDLINE | ID: mdl-30102335

13.

Mannose Phosphate Isomerase and Mannose Regulate Hepatic Stellate Cell Activation and Fibrosis in Zebrafish and Humans.

DeRossi, Charles; Bambino, Kathryn; Morrison, Joshua; Sakarin, Isabel; Villacorta-Martin, Carlos; Zhang, Changwen; Ellis, Jillian L; Fiel, M Isabel; Ybanez, Maria; Lee, Youngmin A; Huang, Kuan-Lin; Yin, Chunyue; Sakaguchi, Takuya F; Friedman, Scott L; Villanueva, Augusto; Chu, Jaime.

Hepatology ; 70(6): 2107-2122, 2019 12.

Article in English | MEDLINE | ID: mdl-31016744

14.

Framework for microRNA variant annotation and prioritization using human population and disease datasets.

Oak, Ninad; Ghosh, Rajarshi; Huang, Kuan-Lin; Wheeler, David A; Ding, Li; Plon, Sharon E.

Hum Mutat ; 40(1): 73-89, 2019 01.

Article in English | MEDLINE | ID: mdl-30302893

15.

Most popular public searches on gene names.

Huang, Kuan-Lin.

Nature ; 553(7689): 405, 2018 Jan.

Article in English | MEDLINE | ID: mdl-32094826

16.

Most popular public searches on gene names.

Huang, Kuan-Lin.

Nature ; 553(7689): 405, 2018 01 25.

Article in English | MEDLINE | ID: mdl-29368711

17.

Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.

Deming, Yuetiva; Li, Zeran; Kapoor, Manav; Harari, Oscar; Del-Aguila, Jorge L; Black, Kathleen; Carrell, David; Cai, Yefei; Fernandez, Maria Victoria; Budde, John; Ma, Shengmei; Saef, Benjamin; Howells, Bill; Huang, Kuan-Lin; Bertelsen, Sarah; Fagan, Anne M; Holtzman, David M; Morris, John C; Kim, Sungeun; Saykin, Andrew J; De Jager, Philip L; Albert, Marilyn; Moghekar, Abhay; O'Brien, Richard; Riemenschneider, Matthias; Petersen, Ronald C; Blennow, Kaj; Zetterberg, Henrik; Minthon, Lennart; Van Deerlin, Vivianna M; Lee, Virginia Man-Yee; Shaw, Leslie M; Trojanowski, John Q; Schellenberg, Gerard; Haines, Jonathan L; Mayeux, Richard; Pericak-Vance, Margaret A; Farrer, Lindsay A; Peskind, Elaine R; Li, Ge; Di Narzo, Antonio F; Kauwe, John S K; Goate, Alison M; Cruchaga, Carlos.

Acta Neuropathol ; 133(5): 839-856, 2017 05.

Article in English | MEDLINE | ID: mdl-28247064

18.

Ten Simple Rules for landing on the right job after your PhD or postdoc.

Huang, Kuan-Lin.

PLoS Comput Biol ; 16(4): e1007723, 2020 04.

Article in English | MEDLINE | ID: mdl-32240162

19.

Chitinase-3-like 1 protein (CHI3L1) locus influences cerebrospinal fluid levels of YKL-40.

Deming, Yuetiva; Black, Kathleen; Carrell, David; Cai, Yefei; Del-Aguila, Jorge L; Fernandez, Maria Victoria; Budde, John; Ma, ShengMei; Saef, Benjamin; Howells, Bill; Bertelsen, Sarah; Huang, Kuan-Lin; Sutphen, Courtney L; Tarawneh, Rawan; Fagan, Anne M; Holtzman, David M; Morris, John C; Goate, Alison M; Dougherty, Joseph D; Cruchaga, Carlos.

BMC Neurol ; 16(1): 217, 2016 Nov 10.

Article in English | MEDLINE | ID: mdl-27832767

20.

Yeast Tdh3 (glyceraldehyde 3-phosphate dehydrogenase) is a Sir2-interacting factor that regulates transcriptional silencing and rDNA recombination.

Ringel, Alison E; Ryznar, Rebecca; Picariello, Hannah; Huang, Kuan-lin; Lazarus, Asmitha G; Holmes, Scott G.

PLoS Genet ; 9(10): e1003871, 2013.

Article in English | MEDLINE | ID: mdl-24146631

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Latin-American Center for Perinatology, Woman and Reproductive Health

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Shared Immunogenic Poly-Epitope Frameshift Mutations in Microsatellite Unstable Tumors.

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.

Pathogenic Germline Variants in 10,389 Adult Cancers.

Using EGFR amplification to stratify recurrent glioblastoma treated with immune checkpoint inhibitors.

Proteogenomics connects somatic mutations to signalling in breast cancer.

Functional analysis of BARD1 missense variants in homology-directed repair and damage sensitivity.

Modeling COVID-19 dynamic using a two-strain model with vaccination.

Cooperation Between Distinct Cancer Driver Genes Underlies Intertumor Heterogeneity in Hepatocellular Carcinoma.

Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability.

Genotype concordance and polygenic risk score estimation across consumer genetic testing data.

GenomeVIP: a cloud platform for genomic variant discovery and interpretation.

CharGer: clinical Characterization of Germline variants.

Mannose Phosphate Isomerase and Mannose Regulate Hepatic Stellate Cell Activation and Fibrosis in Zebrafish and Humans.

Framework for microRNA variant annotation and prioritization using human population and disease datasets.

Most popular public searches on gene names.

Most popular public searches on gene names.

Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.

Ten Simple Rules for landing on the right job after your PhD or postdoc.

Chitinase-3-like 1 protein (CHI3L1) locus influences cerebrospinal fluid levels of YKL-40.

Yeast Tdh3 (glyceraldehyde 3-phosphate dehydrogenase) is a Sir2-interacting factor that regulates transcriptional silencing and rDNA recombination.