Search | VHL CLAP/WR-PAHO/WHO

1.

Jagged 1 Rescues the Duchenne Muscular Dystrophy Phenotype.

Vieira, Natassia M; Elvers, Ingegerd; Alexander, Matthew S; Moreira, Yuri B; Eran, Alal; Gomes, Juliana P; Marshall, Jamie L; Karlsson, Elinor K; Verjovski-Almeida, Sergio; Lindblad-Toh, Kerstin; Kunkel, Louis M; Zatz, Mayana.

Cell ; 163(5): 1204-1213, 2015 Nov 19.

Article in English | MEDLINE | ID: mdl-26582133

2.

Identifying recent adaptations in large-scale genomic data.

Grossman, Sharon R; Andersen, Kristian G; Shlyakhter, Ilya; Tabrizi, Shervin; Winnicki, Sarah; Yen, Angela; Park, Daniel J; Griesemer, Dustin; Karlsson, Elinor K; Wong, Sunny H; Cabili, Moran; Adegbola, Richard A; Bamezai, Rameshwar N K; Hill, Adrian V S; Vannberg, Fredrik O; Rinn, John L; Lander, Eric S; Schaffner, Stephen F; Sabeti, Pardis C.

Cell ; 152(4): 703-13, 2013 Feb 14.

Article in English | MEDLINE | ID: mdl-23415221

3.

Progressive Cactus is a multiple-genome aligner for the thousand-genome era.

Armstrong, Joel; Hickey, Glenn; Diekhans, Mark; Fiddes, Ian T; Novak, Adam M; Deran, Alden; Fang, Qi; Xie, Duo; Feng, Shaohong; Stiller, Josefin; Genereux, Diane; Johnson, Jeremy; Marinescu, Voichita Dana; Alföldi, Jessica; Harris, Robert S; Lindblad-Toh, Kerstin; Haussler, David; Karlsson, Elinor; Jarvis, Erich D; Zhang, Guojie; Paten, Benedict.

Nature ; 587(7833): 246-251, 2020 11.

Article in English | MEDLINE | ID: mdl-33177663

4.

Using evolutionary constraint to define novel candidate driver genes in medulloblastoma.

Roy, Ananya; Sakthikumar, Sharadha; Kozyrev, Sergey V; Nordin, Jessika; Pensch, Raphaela; Mäkeläinen, Suvi; Pettersson, Mats; Karlsson, Elinor K; Lindblad-Toh, Kerstin; Forsberg-Nilsson, Karin.

Proc Natl Acad Sci U S A ; 120(33): e2300984120, 2023 08 15.

Article in English | MEDLINE | ID: mdl-37549291

5.

Darwinian genomics and diversity in the tree of life.

Stephan, Taylorlyn; Burgess, Shawn M; Cheng, Hans; Danko, Charles G; Gill, Clare A; Jarvis, Erich D; Koepfli, Klaus-Peter; Koltes, James E; Lyons, Eric; Ronald, Pamela; Ryder, Oliver A; Schriml, Lynn M; Soltis, Pamela; VandeWoude, Sue; Zhou, Huaijun; Ostrander, Elaine A; Karlsson, Elinor K.

Proc Natl Acad Sci U S A ; 119(4)2022 01 25.

Article in English | MEDLINE | ID: mdl-35042807

6.

Why sequence all eukaryotes?

Blaxter, Mark; Archibald, John M; Childers, Anna K; Coddington, Jonathan A; Crandall, Keith A; Di Palma, Federica; Durbin, Richard; Edwards, Scott V; Graves, Jennifer A M; Hackett, Kevin J; Hall, Neil; Jarvis, Erich D; Johnson, Rebecca N; Karlsson, Elinor K; Kress, W John; Kuraku, Shigehiro; Lawniczak, Mara K N; Lindblad-Toh, Kerstin; Lopez, Jose V; Moran, Nancy A; Robinson, Gene E; Ryder, Oliver A; Shapiro, Beth; Soltis, Pamela S; Warnow, Tandy; Zhang, Guojie; Lewin, Harris A.

Proc Natl Acad Sci U S A ; 119(4)2022 01 25.

Article in English | MEDLINE | ID: mdl-35042801

7.

Evolution of the ancestral mammalian karyotype and syntenic regions.

Damas, Joana; Corbo, Marco; Kim, Jaebum; Turner-Maier, Jason; Farré, Marta; Larkin, Denis M; Ryder, Oliver A; Steiner, Cynthia; Houck, Marlys L; Hall, Shaune; Shiue, Lily; Thomas, Stephen; Swale, Thomas; Daly, Mark; Korlach, Jonas; Uliano-Silva, Marcela; Mazzoni, Camila J; Birren, Bruce W; Genereux, Diane P; Johnson, Jeremy; Lindblad-Toh, Kerstin; Karlsson, Elinor K; Nweeia, Martin T; Johnson, Rebecca N; Lewin, Harris A.

Proc Natl Acad Sci U S A ; 119(40): e2209139119, 2022 10 04.

Article in English | MEDLINE | ID: mdl-36161960

8.

Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia.

Paulat, Nicole S; Storer, Jessica M; Moreno-Santillán, Diana D; Osmanski, Austin B; Sullivan, Kevin A M; Grimshaw, Jenna R; Korstian, Jennifer; Halsey, Michaela; Garcia, Carlos J; Crookshanks, Claudia; Roberts, Jaquelyn; Smit, Arian F A; Hubley, Robert; Rosen, Jeb; Teeling, Emma C; Vernes, Sonja C; Myers, Eugene; Pippel, Martin; Brown, Thomas; Hiller, Michael; Rojas, Danny; Dávalos, Liliana M; Lindblad-Toh, Kerstin; Karlsson, Elinor K; Ray, David A.

Mol Biol Evol ; 40(5)2023 05 02.

Article in English | MEDLINE | ID: mdl-37071810

9.

Comparative neurogenetics of dog behavior complements efforts towards human neuropsychiatric genetics.

Morrill, Kathleen; Chen, Frances; Karlsson, Elinor.

Hum Genet ; 142(8): 1231-1246, 2023 Aug.

Article in English | MEDLINE | ID: mdl-37578529

10.

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates.

Damas, Joana; Hughes, Graham M; Keough, Kathleen C; Painter, Corrie A; Persky, Nicole S; Corbo, Marco; Hiller, Michael; Koepfli, Klaus-Peter; Pfenning, Andreas R; Zhao, Huabin; Genereux, Diane P; Swofford, Ross; Pollard, Katherine S; Ryder, Oliver A; Nweeia, Martin T; Lindblad-Toh, Kerstin; Teeling, Emma C; Karlsson, Elinor K; Lewin, Harris A.

Proc Natl Acad Sci U S A ; 117(36): 22311-22322, 2020 09 08.

Article in English | MEDLINE | ID: mdl-32826334

11.

How to Make a Rodent Giant: Genomic Basis and Tradeoffs of Gigantism in the Capybara, the World's Largest Rodent.

Herrera-Álvarez, Santiago; Karlsson, Elinor; Ryder, Oliver A; Lindblad-Toh, Kerstin; Crawford, Andrew J.

Mol Biol Evol ; 38(5): 1715-1730, 2021 05 04.

Article in English | MEDLINE | ID: mdl-33169792

12.

Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals.

Casewell, Nicholas R; Petras, Daniel; Card, Daren C; Suranse, Vivek; Mychajliw, Alexis M; Richards, David; Koludarov, Ivan; Albulescu, Laura-Oana; Slagboom, Julien; Hempel, Benjamin-Florian; Ngum, Neville M; Kennerley, Rosalind J; Brocca, Jorge L; Whiteley, Gareth; Harrison, Robert A; Bolton, Fiona M S; Debono, Jordan; Vonk, Freek J; Alföldi, Jessica; Johnson, Jeremy; Karlsson, Elinor K; Lindblad-Toh, Kerstin; Mellor, Ian R; Süssmuth, Roderich D; Fry, Bryan G; Kuruppu, Sanjaya; Hodgson, Wayne C; Kool, Jeroen; Castoe, Todd A; Barnes, Ian; Sunagar, Kartik; Undheim, Eivind A B; Turvey, Samuel T.

Proc Natl Acad Sci U S A ; 116(51): 25745-25755, 2019 12 17.

Article in English | MEDLINE | ID: mdl-31772017

13.

A comprehensive genomic history of extinct and living elephants.

Palkopoulou, Eleftheria; Lipson, Mark; Mallick, Swapan; Nielsen, Svend; Rohland, Nadin; Baleka, Sina; Karpinski, Emil; Ivancevic, Atma M; To, Thu-Hien; Kortschak, R Daniel; Raison, Joy M; Qu, Zhipeng; Chin, Tat-Jun; Alt, Kurt W; Claesson, Stefan; Dalén, Love; MacPhee, Ross D E; Meller, Harald; Roca, Alfred L; Ryder, Oliver A; Heiman, David; Young, Sarah; Breen, Matthew; Williams, Christina; Aken, Bronwen L; Ruffier, Magali; Karlsson, Elinor; Johnson, Jeremy; Di Palma, Federica; Alfoldi, Jessica; Adelson, David L; Mailund, Thomas; Munch, Kasper; Lindblad-Toh, Kerstin; Hofreiter, Michael; Poinar, Hendrik; Reich, David.

Proc Natl Acad Sci U S A ; 115(11): E2566-E2574, 2018 03 13.

Article in English | MEDLINE | ID: mdl-29483247

14.

Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter.

Beichman, Annabel C; Koepfli, Klaus-Peter; Li, Gang; Murphy, William; Dobrynin, Pasha; Kliver, Sergei; Tinker, Martin T; Murray, Michael J; Johnson, Jeremy; Lindblad-Toh, Kerstin; Karlsson, Elinor K; Lohmueller, Kirk E; Wayne, Robert K.

Mol Biol Evol ; 36(12): 2631-2655, 2019 12 01.

Article in English | MEDLINE | ID: mdl-31212313

15.

Natural selection and infectious disease in human populations.

Karlsson, Elinor K; Kwiatkowski, Dominic P; Sabeti, Pardis C.

Nat Rev Genet ; 15(6): 379-93, 2014 Jun.

Article in English | MEDLINE | ID: mdl-24776769

16.

The Earth BioGenome Project 2020: Starting the clock.

Lewin, Harris A; Richards, Stephen; Lieberman Aiden, Erez; Allende, Miguel L; Archibald, John M; Bálint, Miklós; Barker, Katharine B; Baumgartner, Bridget; Belov, Katherine; Bertorelle, Giorgio; Blaxter, Mark L; Cai, Jing; Caperello, Nicolette D; Carlson, Keith; Castilla-Rubio, Juan Carlos; Chaw, Shu-Miaw; Chen, Lei; Childers, Anna K; Coddington, Jonathan A; Conde, Dalia A; Corominas, Montserrat; Crandall, Keith A; Crawford, Andrew J; DiPalma, Federica; Durbin, Richard; Ebenezer, ThankGod E; Edwards, Scott V; Fedrigo, Olivier; Flicek, Paul; Formenti, Giulio; Gibbs, Richard A; Gilbert, M Thomas P; Goldstein, Melissa M; Graves, Jennifer Marshall; Greely, Henry T; Grigoriev, Igor V; Hackett, Kevin J; Hall, Neil; Haussler, David; Helgen, Kristofer M; Hogg, Carolyn J; Isobe, Sachiko; Jakobsen, Kjetill Sigurd; Janke, Axel; Jarvis, Erich D; Johnson, Warren E; Jones, Steven J M; Karlsson, Elinor K; Kersey, Paul J; Kim, Jin-Hyoung.

Proc Natl Acad Sci U S A ; 119(4)2022 01 25.

Article in English | MEDLINE | ID: mdl-35042800

17.

Nordic OCD & Related Disorders Consortium: Rationale, design, and methods.

Mataix-Cols, David; Hansen, Bjarne; Mattheisen, Manuel; Karlsson, Elinor K; Addington, Anjené M; Boberg, Julia; Djurfeldt, Diana R; Halvorsen, Matthew; Lichtenstein, Paul; Solem, Stian; Lindblad-Toh, Kerstin; Haavik, Jan; Kvale, Gerd; Rück, Christian; Crowley, James J.

Am J Med Genet B Neuropsychiatr Genet ; 183(1): 38-50, 2020 01.

Article in English | MEDLINE | ID: mdl-31424634

18.

Low guanylyl cyclase activity in Weddell seals: implications for peripheral vasoconstriction and perfusion of the brain during diving.

Hindle, Allyson G; Allen, Kaitlin N; Batten, Annabelle J; Hückstädt, Luis A; Turner-Maier, Jason; Schulberg, S Anne; Johnson, Jeremy; Karlsson, Elinor; Lindblad-Toh, Kerstin; Costa, Daniel P; Bloch, Donald B; Zapol, Warren M; Buys, Emmanuel S.

Am J Physiol Regul Integr Comp Physiol ; 316(6): R704-R715, 2019 06 01.

Article in English | MEDLINE | ID: mdl-30892912

19.

Pet genomics medicine runs wild.

Moses, Lisa; Niemi, Steve; Karlsson, Elinor.

Nature ; 559(7715): 470-472, 2018 07.

Article in English | MEDLINE | ID: mdl-30046086

20.

Analysis of the Human Mucosal Response to Cholera Reveals Sustained Activation of Innate Immune Signaling Pathways.

Bourque, Daniel L; Bhuiyan, Taufiqur Rahman; Genereux, Diane P; Rashu, Rasheduzzaman; Ellis, Crystal N; Chowdhury, Fahima; Khan, Ashraful I; Alam, Nur Haq; Paul, Anik; Hossain, Lazina; Mayo-Smith, Leslie M; Charles, Richelle C; Weil, Ana A; LaRocque, Regina C; Calderwood, Stephen B; Ryan, Edward T; Karlsson, Elinor K; Qadri, Firdausi; Harris, Jason B.

Infect Immun ; 86(2)2018 02.

Article in English | MEDLINE | ID: mdl-29133347

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Latin-American Center for Perinatology, Woman and Reproductive Health

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Jagged 1 Rescues the Duchenne Muscular Dystrophy Phenotype.

Identifying recent adaptations in large-scale genomic data.

Progressive Cactus is a multiple-genome aligner for the thousand-genome era.

Using evolutionary constraint to define novel candidate driver genes in medulloblastoma.

Darwinian genomics and diversity in the tree of life.

Why sequence all eukaryotes?

Evolution of the ancestral mammalian karyotype and syntenic regions.

Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia.

Comparative neurogenetics of dog behavior complements efforts towards human neuropsychiatric genetics.

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates.

How to Make a Rodent Giant: Genomic Basis and Tradeoffs of Gigantism in the Capybara, the World's Largest Rodent.

Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals.

A comprehensive genomic history of extinct and living elephants.

Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter.

Natural selection and infectious disease in human populations.

The Earth BioGenome Project 2020: Starting the clock.

Nordic OCD & Related Disorders Consortium: Rationale, design, and methods.

Low guanylyl cyclase activity in Weddell seals: implications for peripheral vasoconstriction and perfusion of the brain during diving.

Pet genomics medicine runs wild.

Analysis of the Human Mucosal Response to Cholera Reveals Sustained Activation of Innate Immune Signaling Pathways.