Search | VHL CLAP/WR-PAHO/WHO

1.

Low-Affinity Binding Sites and the Transcription Factor Specificity Paradox in Eukaryotes.

Kribelbauer, Judith F; Rastogi, Chaitanya; Bussemaker, Harmen J; Mann, Richard S.

Annu Rev Cell Dev Biol ; 35: 357-379, 2019 10 06.

Article in English | MEDLINE | ID: mdl-31283382

2.

The Importance of Timing.

Mann, Richard S; Howard, Clare E.

Cell ; 164(3): 347-8, 2016 Jan 28.

Article in English | MEDLINE | ID: mdl-26824651

3.

Deconvolving the recognition of DNA shape from sequence.

Abe, Namiko; Dror, Iris; Yang, Lin; Slattery, Matthew; Zhou, Tianyin; Bussemaker, Harmen J; Rohs, Remo; Mann, Richard S.

Cell ; 161(2): 307-18, 2015 Apr 09.

Article in English | MEDLINE | ID: mdl-25843630

4.

Low affinity binding site clusters confer hox specificity and regulatory robustness.

Crocker, Justin; Abe, Namiko; Rinaldi, Lucrezia; McGregor, Alistair P; Frankel, Nicolás; Wang, Shu; Alsawadi, Ahmad; Valenti, Philippe; Plaza, Serge; Payre, François; Mann, Richard S; Stern, David L.

Cell ; 160(1-2): 191-203, 2015 Jan 15.

Article in English | MEDLINE | ID: mdl-25557079

5.

Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins.

Kribelbauer, Judith F; Loker, Ryan E; Feng, Siqian; Rastogi, Chaitanya; Abe, Namiko; Rube, H Tomas; Bussemaker, Harmen J; Mann, Richard S.

Mol Cell ; 78(1): 152-167.e11, 2020 04 02.

Article in English | MEDLINE | ID: mdl-32053778

6.

Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins.

Slattery, Matthew; Riley, Todd; Liu, Peng; Abe, Namiko; Gomez-Alcala, Pilar; Dror, Iris; Zhou, Tianyin; Rohs, Remo; Honig, Barry; Bussemaker, Harmen J; Mann, Richard S.

Cell ; 147(6): 1270-82, 2011 Dec 09.

Article in English | MEDLINE | ID: mdl-22153072

7.

Dense and pleiotropic regulatory information in a developmental enhancer.

Fuqua, Timothy; Jordan, Jeff; van Breugel, Maria Elize; Halavatyi, Aliaksandr; Tischer, Christian; Polidoro, Peter; Abe, Namiko; Tsai, Albert; Mann, Richard S; Stern, David L; Crocker, Justin.

Nature ; 587(7833): 235-239, 2020 11.

Article in English | MEDLINE | ID: mdl-33057197

8.

Origins of specificity in protein-DNA recognition.

Rohs, Remo; Jin, Xiangshu; West, Sean M; Joshi, Rohit; Honig, Barry; Mann, Richard S.

Annu Rev Biochem ; 79: 233-69, 2010.

Article in English | MEDLINE | ID: mdl-20334529

9.

SpyChIP identifies cell type-specific transcription factor occupancy from complex tissues.

Feng, Siqian; Mann, Richard S.

Proc Natl Acad Sci U S A ; 119(25): e2122900119, 2022 06 21.

Article in English | MEDLINE | ID: mdl-35696584

10.

Homothorax controls a binary Rhodopsin switch in Drosophila ocelli.

Mishra, Abhishek Kumar; Fritsch, Cornelia; Voutev, Roumen; Mann, Richard S; Sprecher, Simon G.

PLoS Genet ; 17(7): e1009460, 2021 07.

Article in English | MEDLINE | ID: mdl-34314427

11.

Control of tissue morphogenesis by the HOX gene Ultrabithorax.

Diaz-de-la-Loza, Maria-Del-Carmen; Loker, Ryan; Mann, Richard S; Thompson, Barry J.

Development ; 147(5)2020 03 02.

Article in English | MEDLINE | ID: mdl-32122911

12.

A lexicon for homeodomain-DNA recognition.

Affolter, Markus; Slattery, Matthew; Mann, Richard S.

Cell ; 133(7): 1133-5, 2008 Jun 27.

Article in English | MEDLINE | ID: mdl-18585344

13.

Low affinity binding sites in an activating CRM mediate negative autoregulation of the Drosophila Hox gene Ultrabithorax.

Delker, Rebecca K; Ranade, Vikram; Loker, Ryan; Voutev, Roumen; Mann, Richard S.

PLoS Genet ; 15(10): e1008444, 2019 10.

Article in English | MEDLINE | ID: mdl-31589607

14.

Hox genes: The original body builders.

Mann, Richard S; Glassford, William J.

Semin Cell Dev Biol ; 152-153: 1-3, 2024.

Article in English | MEDLINE | ID: mdl-37291029

15.

cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg.

Newcomb, Susan; Voutev, Roumen; Jory, Aurelie; Delker, Rebecca K; Slattery, Matthew; Mann, Richard S.

PLoS Genet ; 14(8): e1007568, 2018 08.

Article in English | MEDLINE | ID: mdl-30142157

16.

Accurate and sensitive quantification of protein-DNA binding affinity.

Rastogi, Chaitanya; Rube, H Tomas; Kribelbauer, Judith F; Crocker, Justin; Loker, Ryan E; Martini, Gabriella D; Laptenko, Oleg; Freed-Pastor, William A; Prives, Carol; Stern, David L; Mann, Richard S; Bussemaker, Harmen J.

Proc Natl Acad Sci U S A ; 115(16): E3692-E3701, 2018 04 17.

Article in English | MEDLINE | ID: mdl-29610332

17.

Disentangling the many layers of eukaryotic transcriptional regulation.

Lelli, Katherine M; Slattery, Matthew; Mann, Richard S.

Annu Rev Genet ; 46: 43-68, 2012.

Article in English | MEDLINE | ID: mdl-22934649

18.

To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins.

Merabet, Samir; Mann, Richard S.

Trends Genet ; 32(6): 334-347, 2016 06.

Article in English | MEDLINE | ID: mdl-27066866

19.

Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein-DNA binding.

Chiu, Tsu-Pei; Rao, Satyanarayan; Mann, Richard S; Honig, Barry; Rohs, Remo.

Nucleic Acids Res ; 45(21): 12565-12576, 2017 Dec 01.

Article in English | MEDLINE | ID: mdl-29040720

20.

Competition for cofactor-dependent DNA binding underlies Hox phenotypic suppression.

Noro, Barbara; Lelli, Katherine; Sun, Liping; Mann, Richard S.

Genes Dev ; 25(22): 2327-32, 2011 Nov 15.

Article in English | MEDLINE | ID: mdl-22085961

VHL CLAP/WR-PAHO/WHO

Latin-American Center for Perinatology, Woman and Reproductive Health

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