Search | VHL CLAP/WR-PAHO/WHO

1.

ProtVar: mapping and contextualizing human missense variation.

Stephenson, James D; Totoo, Prabhat; Burke, David F; Jänes, Jürgen; Beltrao, Pedro; Martin, Maria J.

Nucleic Acids Res ; 2024 May 20.

Article in English | MEDLINE | ID: mdl-38769064

2.

The effects of pathogenic and likely pathogenic variants for inherited hemostasis disorders in 140 214 UK Biobank participants.

Stefanucci, Luca; Collins, Janine; Sims, Matthew C; Barrio-Hernandez, Inigo; Sun, Luanluan; Burren, Oliver S; Perfetto, Livia; Bender, Isobel; Callahan, Tiffany J; Fleming, Kathryn; Guerrero, Jose A; Hermjakob, Henning; Martin, Maria J; Stephenson, James; Paneerselvam, Kalpana; Petrovski, Slavé; Porras, Pablo; Robinson, Peter N; Wang, Quanli; Watkins, Xavier; Frontini, Mattia; Laskowski, Roman A; Beltrao, Pedro; Di Angelantonio, Emanuele; Gomez, Keith; Laffan, Mike; Ouwehand, Willem H; Mumford, Andrew D; Freson, Kathleen; Carss, Keren; Downes, Kate; Gleadall, Nick; Megy, Karyn; Bruford, Elspeth; Vuckovic, Dragana.

Blood ; 142(24): 2055-2068, 2023 12 14.

Article in English | MEDLINE | ID: mdl-37647632

3.

Transfer learning for drug-target interaction prediction.

Dalkiran, Alperen; Atakan, Ahmet; Rifaioglu, Ahmet S; Martin, Maria J; Atalay, Rengül Çetin; Acar, Aybar C; Dogan, Tunca; Atalay, Volkan.

Bioinformatics ; 39(39 Suppl 1): i103-i110, 2023 06 30.

Article in English | MEDLINE | ID: mdl-37387156

4.

Inflammatory bowel disease induces pathological α-synuclein aggregation in the human gut and brain.

Espinosa-Oliva, Ana M; Ruiz, Rocío; Soto, Manuel Sarmiento; Boza-Serrano, Antonio; Rodriguez-Perez, Ana I; Roca-Ceballos, María A; García-Revilla, Juan; Santiago, Marti; Serres, Sébastien; Economopoulus, Vasiliki; Carvajal, Ana E; Vázquez-Carretero, María D; García-Miranda, Pablo; Klementieva, Oxana; Oliva-Martín, María J; Deierborg, Tomas; Rivas, Eloy; Sibson, Nicola R; Labandeira-García, José L; Machado, Alberto; Peral, María J; Herrera, Antonio J; Venero, José L; de Pablos, Rocío M.

Neuropathol Appl Neurobiol ; 50(1): e12962, 2024 Feb.

Article in English | MEDLINE | ID: mdl-38343067

5.

The Quest for Orthologs orthology benchmark service in 2022.

Nevers, Yannis; Jones, Tamsin E M; Jyothi, Dushyanth; Yates, Bethan; Ferret, Meritxell; Portell-Silva, Laura; Codo, Laia; Cosentino, Salvatore; Marcet-Houben, Marina; Vlasova, Anna; Poidevin, Laetitia; Kress, Arnaud; Hickman, Mark; Persson, Emma; Pilizota, Ivana; Guijarro-Clarke, Cristina; Iwasaki, Wataru; Lecompte, Odile; Sonnhammer, Erik; Roos, David S; Gabaldón, Toni; Thybert, David; Thomas, Paul D; Hu, Yanhui; Emms, David M; Bruford, Elspeth; Capella-Gutierrez, Salvador; Martin, Maria J; Dessimoz, Christophe; Altenhoff, Adrian.

Nucleic Acids Res ; 50(W1): W623-W632, 2022 07 05.

Article in English | MEDLINE | ID: mdl-35552456

6.

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Hufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne-Christin; Heider, Dominik; Hoffmann, Marie; Hölzer, Martin; Hoops, Stefan; Kaderali, Lars; Kalvari, Ioanna; von Kleist, Max; Kmiecinski, Renó; Kühnert, Denise; Lasso, Gorka; Libin, Pieter; List, Markus; Löchel, Hannah F; Martin, Maria J; Martin, Roman; Matschinske, Julian; McHardy, Alice C; Mendes, Pedro; Mistry, Jaina; Navratil, Vincent; Nawrocki, Eric P; O'Toole, Áine Niamh; Ontiveros-Palacios, Nancy; Petrov, Anton I; Rangel-Pineros, Guillermo; Redaschi, Nicole; Reimering, Susanne; Reinert, Knut; Reyes, Alejandro; Richardson, Lorna; Robertson, David L; Sadegh, Sepideh; Singer, Joshua B.

Brief Bioinform ; 22(2): 642-663, 2021 03 22.

Article in English | MEDLINE | ID: mdl-33147627

7.

Hierarchical deep learning for predicting GO annotations by integrating protein knowledge.

Merino, Gabriela A; Saidi, Rabie; Milone, Diego H; Stegmayer, Georgina; Martin, Maria J.

Bioinformatics ; 38(19): 4488-4496, 2022 09 30.

Article in English | MEDLINE | ID: mdl-35929781

8.

Changes in vineyard soil parameters after repeated application of organic-inorganic amendments based on spent mushroom substrate.

Carpio, M José; Andrades, M Soledad; Herrero-Hernández, Eliseo; Marín-Benito, Jesús M; Sánchez-Martín, María J; Rodríguez-Cruz, M Sonia.

Environ Res ; 221: 115339, 2023 03 15.

Article in English | MEDLINE | ID: mdl-36682445

9.

Combining participatory action research and emerging ways of collective action to promote institutional change toward social commitment: Groundings, strategies, and implications of an experience.

López, Jorge S; Soria-Oliver, María; Aramayona, Begoña; García-Sánchez, Rubén; Martín, María J; Martínez, José M.

J Community Psychol ; 51(3): 1435-1453, 2023 04.

Article in English | MEDLINE | ID: mdl-33999429

10.

PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models.

González-Seoane, Borja; Ponte-Fernández, Christian; González-Domínguez, Jorge; Martín, María J.

BMC Bioinformatics ; 23(1): 117, 2022 Apr 02.

Article in English | MEDLINE | ID: mdl-35366804

11.

Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation.

Kalyuzhnyy, Anton; Eyers, Patrick A; Eyers, Claire E; Bowler-Barnett, Emily; Martin, Maria J; Sun, Zhi; Deutsch, Eric W; Jones, Andrew R.

J Proteome Res ; 21(6): 1510-1524, 2022 06 03.

Article in English | MEDLINE | ID: mdl-35532924

12.

Epidemiological Study of Tricuspid Regurgitation After Cardiac Transplantation. Does it Influence Survival?

López-Vilella, Raquel; Paniagua-Martín, María J; González-Vílchez, Francisco; Donoso Trenado, Víctor; Barge-Caballero, Eduardo; Sánchez-Lázaro, Ignacio; Aller Fernández, Ana V; Martínez-Dolz, Luis; Crespo-Leiro, María G; Almenar-Bonet, Luis.

Transpl Int ; 35: 10197, 2022.

Article in English | MEDLINE | ID: mdl-35387398

13.

Harmonized D-dimer levels upon admission for prognosis of COVID-19 severity: Results from a Spanish multicenter registry (BIOCOVID-Spain study).

García de Guadiana-Romualdo, Luis; Morell-García, Daniel; Favaloro, Emmanuel J; Vílchez, Juan A; Bauça, Josep M; Alcaide Martín, María J; Gutiérrez Garcia, Irene; de la Hera Cagigal, Patricia; Egea-Caparrós, José Manuel; Pérez Sanmartín, Sonia; Gutiérrez Revilla, José I; Urrechaga, Eloísa; Álamo, Jose M; Hernando Holgado, Ana M; Lorenzo-Lozano, María-Carmen; Canalda Campás, Magdalena; Juncos Tobarra, María A; Morales-Indiano, Cristian; Vírseda Chamorro, Isabel; Pastor Murcia, Yolanda; Sahuquillo Frías, Laura; Altimira Queral, Laura; Nuez-Zaragoza, Elisa; Adell Ruiz de León, Juan; Ruiz Ripa, Alicia; Salas Gómez-Pablos, Paloma; Cebreiros López, Iria; Fernández Uriarte, Amaia; Larruzea, Alex; López Yepes, María L; Sancho-Rodríguez, Natalia; Zamorano Andrés, María C; Pedregosa Díaz, José; Sáenz, Luis; Esparza Del Valle, Clara; Baamonde Calzada, María C; García Muñoz, Sara; Vera, Marina; Martín Torres, Esther; Sánchez Fdez-Pacheco, Silvia; Vicente Gutiérrez, Luis; Jiménez Añón, Laura; Pérez Martínez, Alfonso; Pons Castillo, Aurelio; González Tamayo, Ruth; Férriz Vivancos, Jorge; Rodríguez-Fraga, Olaia; Díaz-Brito, Vicens; Aguadero, Vicente; García Arévalo, M G.

J Thromb Thrombolysis ; 53(1): 103-112, 2022 Jan.

Article in English | MEDLINE | ID: mdl-34272635

14.

The Quest for Orthologs benchmark service and consensus calls in 2020.

Altenhoff, Adrian M; Garrayo-Ventas, Javier; Cosentino, Salvatore; Emms, David; Glover, Natasha M; Hernández-Plaza, Ana; Nevers, Yannis; Sundesha, Vicky; Szklarczyk, Damian; Fernández, José M; Codó, Laia; For Orthologs Consortium, The Quest; Gelpi, Josep Ll; Huerta-Cepas, Jaime; Iwasaki, Wataru; Kelly, Steven; Lecompte, Odile; Muffato, Matthieu; Martin, Maria J; Capella-Gutierrez, Salvador; Thomas, Paul D; Sonnhammer, Erik; Dessimoz, Christophe.

Nucleic Acids Res ; 48(W1): W538-W545, 2020 07 02.

Article in English | MEDLINE | ID: mdl-32374845

15.

Toxo: a library for calculating penetrance tables of high-order epistasis models.

Ponte-Fernández, Christian; González-Domínguez, Jorge; Carvajal-Rodríguez, Antonio; Martín, María J.

BMC Bioinformatics ; 21(1): 138, 2020 Apr 09.

Article in English | MEDLINE | ID: mdl-32272874

16.

Expanding the horizons of microRNA bioinformatics.

Huntley, Rachael P; Kramarz, Barbara; Sawford, Tony; Umrao, Zara; Kalea, Anastasia; Acquaah, Vanessa; Martin, Maria J; Mayr, Manuel; Lovering, Ruth C.

RNA ; 24(8): 1005-1017, 2018 08.

Article in English | MEDLINE | ID: mdl-29871895

17.

Mobility monitoring of two herbicides in amended soils: A field study for modeling applications.

Carpio, María J; Rodríguez-Cruz, M Sonia; García-Delgado, Carlos; Sánchez-Martín, María J; Marín-Benito, Jesús M.

J Environ Manage ; 260: 110161, 2020 Apr 15.

Article in English | MEDLINE | ID: mdl-32090848

18.

UniProt genomic mapping for deciphering functional effects of missense variants.

McGarvey, Peter B; Nightingale, Andrew; Luo, Jie; Huang, Hongzhan; Martin, Maria J; Wu, Cathy.

Hum Mutat ; 40(6): 694-705, 2019 06.

Article in English | MEDLINE | ID: mdl-30840782

19.

Standardized benchmarking in the quest for orthologs.

Altenhoff, Adrian M; Boeckmann, Brigitte; Capella-Gutierrez, Salvador; Dalquen, Daniel A; DeLuca, Todd; Forslund, Kristoffer; Huerta-Cepas, Jaime; Linard, Benjamin; Pereira, Cécile; Pryszcz, Leszek P; Schreiber, Fabian; da Silva, Alan Sousa; Szklarczyk, Damian; Train, Clément-Marie; Bork, Peer; Lecompte, Odile; von Mering, Christian; Xenarios, Ioannis; Sjölander, Kimmen; Jensen, Lars Juhl; Martin, Maria J; Muffato, Matthieu; Gabaldón, Toni; Lewis, Suzanna E; Thomas, Paul D; Sonnhammer, Erik; Dessimoz, Christophe.

Nat Methods ; 13(5): 425-30, 2016 05.

Article in English | MEDLINE | ID: mdl-27043882

20.

In-hospital postoperative infection after heart transplantation: Risk factors and development of a novel predictive score.

Fernández-Ugidos, Paula; Barge-Caballero, Eduardo; Gómez-López, Rocío; Paniagua-Martin, María J; Barge-Caballero, Gonzalo; Couto-Mallón, David; Solla-Buceta, Miguel; Iglesias-Gil, Carmen; Aller-Fernández, Vanesa; González-Barbeito, Miguel; Vázquez-Rodríguez, Jose Manuel; Crespo-Leiro, María G.

Transpl Infect Dis ; 21(4): e13104, 2019 Aug.

Article in English | MEDLINE | ID: mdl-31077542

VHL CLAP/WR-PAHO/WHO

Latin-American Center for Perinatology, Woman and Reproductive Health

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