Search | VHL CLAP/WR-PAHO/WHO

1.

Heterochromatic 3D genome organization is directed by HP1a- and H3K9-dependent and independent mechanisms.

Stutzman, Alexis V; Hill, Christina A; Armstrong, Robin L; Gohil, Riya; Duronio, Robert J; Dowen, Jill M; McKay, Daniel J.

Mol Cell ; 2024 May 18.

Article in English | MEDLINE | ID: mdl-38795706

2.

A split personality for nucleosomes.

McKay, Daniel J; Lieb, Jason D.

Cell ; 159(6): 1249-51, 2014 Dec 04.

Article in English | MEDLINE | ID: mdl-25480289

3.

Opportunistic binding of EcR to open chromatin drives tissue-specific developmental responses.

Uyehara, Christopher M; Leatham-Jensen, Mary; McKay, Daniel J.

Proc Natl Acad Sci U S A ; 119(40): e2208935119, 2022 10 04.

Article in English | MEDLINE | ID: mdl-36161884

4.

Hormone-dependent control of developmental timing through regulation of chromatin accessibility.

Uyehara, Christopher M; Nystrom, Spencer L; Niederhuber, Matthew J; Leatham-Jensen, Mary; Ma, Yiqin; Buttitta, Laura A; McKay, Daniel J.

Genes Dev ; 31(9): 862-875, 2017 05 01.

Article in English | MEDLINE | ID: mdl-28536147

5.

Direct interrogation of the role of H3K9 in metazoan heterochromatin function.

Penke, Taylor J R; McKay, Daniel J; Strahl, Brian D; Matera, A Gregory; Duronio, Robert J.

Genes Dev ; 30(16): 1866-80, 2016 08 15.

Article in English | MEDLINE | ID: mdl-27566777

6.

Expression of E93 provides an instructive cue to control dynamic enhancer activity and chromatin accessibility during development.

Nystrom, Spencer L; Niederhuber, Matthew J; McKay, Daniel J.

Development ; 147(6)2020 03 16.

Article in English | MEDLINE | ID: mdl-32094114

7.

Disentangling the developmental origins of a novel phenotype: enhancement versus reversal of environmentally induced gene expression.

Levis, Nicholas A; McKay, Daniel J; Pfennig, David W.

Proc Biol Sci ; 289(1985): 20221764, 2022 10 26.

Article in English | MEDLINE | ID: mdl-36285495

8.

Changes in chromatin accessibility ensure robust cell cycle exit in terminally differentiated cells.

Ma, Yiqin; McKay, Daniel J; Buttitta, Laura.

PLoS Biol ; 17(9): e3000378, 2019 09.

Article in English | MEDLINE | ID: mdl-31479438

9.

Memes: A motif analysis environment in R using tools from the MEME Suite.

Nystrom, Spencer L; McKay, Daniel J.

PLoS Comput Biol ; 17(9): e1008991, 2021 09.

Article in English | MEDLINE | ID: mdl-34570758

10.

Direct and widespread role for the nuclear receptor EcR in mediating the response to ecdysone in Drosophila.

Uyehara, Christopher M; McKay, Daniel J.

Proc Natl Acad Sci U S A ; 116(20): 9893-9902, 2019 05 14.

Article in English | MEDLINE | ID: mdl-31019084

11.

Lysine 27 of replication-independent histone H3.3 is required for Polycomb target gene silencing but not for gene activation.

Leatham-Jensen, Mary; Uyehara, Christopher M; Strahl, Brian D; Matera, A Gregory; Duronio, Robert J; McKay, Daniel J.

PLoS Genet ; 15(1): e1007932, 2019 01.

Article in English | MEDLINE | ID: mdl-30699116

12.

Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila.

Armstrong, Robin L; Penke, Taylor J R; Strahl, Brian D; Matera, A Gregory; McKay, Daniel J; MacAlpine, David M; Duronio, Robert J.

Genome Res ; 28(11): 1688-1700, 2018 11.

Article in English | MEDLINE | ID: mdl-30279224

13.

Enhancer identification and activity evaluation in the red flour beetle, Tribolium castaneum.

Lai, Yi-Ting; Deem, Kevin D; Borràs-Castells, Ferran; Sambrani, Nagraj; Rudolf, Heike; Suryamohan, Kushal; El-Sherif, Ezzat; Halfon, Marc S; McKay, Daniel J; Tomoyasu, Yoshinori.

Development ; 145(7)2018 04 05.

Article in English | MEDLINE | ID: mdl-29540499

14.

Transcriptomic bases of a polyphenism.

Levis, Nicholas A; Kelly, Patrick W; Harmon, Emily A; Ehrenreich, Ian M; McKay, Daniel J; Pfennig, David W.

J Exp Zool B Mol Dev Evol ; 336(6): 482-495, 2021 09.

Article in English | MEDLINE | ID: mdl-34142757

15.

Supramolecular assembly of the beta-catenin destruction complex and the effect of Wnt signaling on its localization, molecular size, and activity in vivo.

Schaefer, Kristina N; Bonello, Teresa T; Zhang, Shiping; Williams, Clara E; Roberts, David M; McKay, Daniel J; Peifer, Mark.

PLoS Genet ; 14(4): e1007339, 2018 04.

Article in English | MEDLINE | ID: mdl-29641560

16.

An online repository of solvation thermodynamic and structural maps of SARS-CoV-2 targets.

Olson, Brian; Cruz, Anthony; Chen, Lieyang; Ghattas, Mossa; Ji, Yeonji; Huang, Kunhui; Ayoub, Steven; Luchko, Tyler; McKay, Daniel J; Kurtzman, Tom.

J Comput Aided Mol Des ; 34(12): 1219-1228, 2020 12.

Article in English | MEDLINE | ID: mdl-32918236

17.

Chromatin profiling of Drosophila CNS subpopulations identifies active transcriptional enhancers.

Pearson, Joseph C; McKay, Daniel J; Lieb, Jason D; Crews, Stephen T.

Development ; 143(20): 3723-3732, 2016 10 15.

Article in English | MEDLINE | ID: mdl-27802137

18.

Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster.

Meers, Michael P; Adelman, Karen; Duronio, Robert J; Strahl, Brian D; McKay, Daniel J; Matera, A Gregory.

BMC Genomics ; 19(1): 157, 2018 02 21.

Article in English | MEDLINE | ID: mdl-29466941

19.

Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo.

Schulz, Katharine N; Bondra, Eliana R; Moshe, Arbel; Villalta, Jacqueline E; Lieb, Jason D; Kaplan, Tommy; McKay, Daniel J; Harrison, Melissa M.

Genome Res ; 25(11): 1715-26, 2015 Nov.

Article in English | MEDLINE | ID: mdl-26335634

20.

Advancements in mapping 3D genome architecture.

McKay, Daniel J; Stutzman, Alexis V; Dowen, Jill M.

Methods ; 170: 75-81, 2020 01 01.

Article in English | MEDLINE | ID: mdl-31201934

VHL CLAP/WR-PAHO/WHO

Latin-American Center for Perinatology, Woman and Reproductive Health

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