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1.
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
Nat Methods
; 18(11): 1322-1332, 2021 11.
Article
in English
| MEDLINE | ID: mdl-34725481
2.
Ribbon: intuitive visualization for complex genomic variation.
Bioinformatics
; 37(3): 413-415, 2021 04 20.
Article
in English
| MEDLINE | ID: mdl-32766814
3.
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line.
Genome Res
; 28(8): 1126-1135, 2018 08.
Article
in English
| MEDLINE | ID: mdl-29954844
4.
Accurate detection of complex structural variations using single-molecule sequencing.
Nat Methods
; 15(6): 461-468, 2018 06.
Article
in English
| MEDLINE | ID: mdl-29713083
5.
BigTop: a three-dimensional virtual reality tool for GWAS visualization.
BMC Bioinformatics
; 21(1): 39, 2020 Jan 31.
Article
in English
| MEDLINE | ID: mdl-32005132
6.
Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting.
N Engl J Med
; 386(7): 700-702, 2022 02 17.
Article
in English
| MEDLINE | ID: mdl-35020984
7.
Phased diploid genome assembly with single-molecule real-time sequencing.
Nat Methods
; 13(12): 1050-1054, 2016 Dec.
Article
in English
| MEDLINE | ID: mdl-27749838
8.
GenomeScope: fast reference-free genome profiling from short reads.
Bioinformatics
; 33(14): 2202-2204, 2017 Jul 15.
Article
in English
| MEDLINE | ID: mdl-28369201
9.
Assemblytics: a web analytics tool for the detection of variants from an assembly.
Bioinformatics
; 32(19): 3021-3, 2016 10 01.
Article
in English
| MEDLINE | ID: mdl-27318204
10.
Local read haplotagging enables accurate long-read small variant calling.
bioRxiv
; 2023 Sep 12.
Article
in English
| MEDLINE | ID: mdl-37745389
11.
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer.
Nat Biotechnol
; 41(2): 232-238, 2023 02.
Article
in English
| MEDLINE | ID: mdl-36050551
12.
Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing.
Nat Biotechnol
; 40(7): 1035-1041, 2022 07.
Article
in English
| MEDLINE | ID: mdl-35347328
13.
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.
Cell Genom
; 2(5)2022 May 11.
Article
in English
| MEDLINE | ID: mdl-35720974
14.
Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing.
DNA Res
; 23(4): 339-51, 2016 Aug.
Article
in English
| MEDLINE | ID: mdl-27345719
15.
The effect of α-mating factor secretion signal mutations on recombinant protein expression in Pichia pastoris.
Gene
; 519(2): 311-7, 2013 May 01.
Article
in English
| MEDLINE | ID: mdl-23454485
16.
Analysis of the 5' untranslated region (5'UTR) of the alcohol oxidase 1 (AOX1) gene in recombinant protein expression in Pichia pastoris.
Gene
; 496(2): 118-27, 2012 Apr 01.
Article
in English
| MEDLINE | ID: mdl-22285974
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