Search details
1.
Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach.
PLoS Comput Biol
; 17(3): e1008857, 2021 03.
Article
in English
| MEDLINE | ID: mdl-33780444
2.
Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling.
Antimicrob Agents Chemother
; 64(3)2020 02 21.
Article
in English
| MEDLINE | ID: mdl-31907190
3.
Mutual independence of alkaline- and calcium-mediated signalling in Aspergillus fumigatus refutes the existence of a conserved druggable signalling nexus.
Mol Microbiol
; 106(6): 861-875, 2017 Dec.
Article
in English
| MEDLINE | ID: mdl-28922497
4.
Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence.
PLoS Pathog
; 11(4): e1004834, 2015 Apr.
Article
in English
| MEDLINE | ID: mdl-25909486
5.
Reducing the Bottleneck in Discovery of Novel Antibiotics.
Microb Ecol
; 73(3): 658-667, 2017 04.
Article
in English
| MEDLINE | ID: mdl-27896376
6.
The tandem repeats enabling reversible switching between the two phases of ß-lactamase substrate spectrum.
PLoS Genet
; 10(9): e1004640, 2014 Sep.
Article
in English
| MEDLINE | ID: mdl-25233343
7.
The pH-responsive PacC transcription factor of Aspergillus fumigatus governs epithelial entry and tissue invasion during pulmonary aspergillosis.
PLoS Pathog
; 10(10): e1004413, 2014 Oct.
Article
in English
| MEDLINE | ID: mdl-25329394
8.
A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses.
BMC Bioinformatics
; 16: 31, 2015 Feb 01.
Article
in English
| MEDLINE | ID: mdl-25638274
9.
Aspergillus galactosaminogalactan mediates adherence to host constituents and conceals hyphal ß-glucan from the immune system.
PLoS Pathog
; 9(8): e1003575, 2013.
Article
in English
| MEDLINE | ID: mdl-23990787
10.
Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus.
BMC Genomics
; 15: 159, 2014 Feb 25.
Article
in English
| MEDLINE | ID: mdl-24568630
11.
Transcript amplification from single bacterium for transcriptome analysis.
Genome Res
; 21(6): 925-35, 2011 Jun.
Article
in English
| MEDLINE | ID: mdl-21536723
12.
Clonality despite sex: the evolution of host-associated sexual neighborhoods in the pathogenic fungus Penicillium marneffei.
PLoS Pathog
; 8(10): e1002851, 2012.
Article
in English
| MEDLINE | ID: mdl-23055919
13.
The inhibitory effect of Bacillus megaterium on aflatoxin and cyclopiazonic acid biosynthetic pathway gene expression in Aspergillus flavus.
Appl Microbiol Biotechnol
; 98(11): 5161-72, 2014 Jun.
Article
in English
| MEDLINE | ID: mdl-24652062
14.
Large-scale transcriptional response to hypoxia in Aspergillus fumigatus observed using RNAseq identifies a novel hypoxia regulated ncRNA.
Mycopathologia
; 178(5-6): 331-9, 2014 Dec.
Article
in English
| MEDLINE | ID: mdl-24996522
15.
HacA-independent functions of the ER stress sensor IreA synergize with the canonical UPR to influence virulence traits in Aspergillus fumigatus.
PLoS Pathog
; 7(10): e1002330, 2011 Oct.
Article
in English
| MEDLINE | ID: mdl-22028661
16.
Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort.
Microbiome
; 11(1): 127, 2023 06 05.
Article
in English
| MEDLINE | ID: mdl-37271810
17.
Draft genome sequence determination for cystic fibrosis and chronic granulomatous disease Burkholderia multivorans isolates.
J Bacteriol
; 194(22): 6356-7, 2012 Nov.
Article
in English
| MEDLINE | ID: mdl-23105085
18.
Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability.
BMC Genomics
; 13: 698, 2012 Dec 12.
Article
in English
| MEDLINE | ID: mdl-23234273
19.
Comparative genomic analysis of fruiting body formation in Myxococcales.
Mol Biol Evol
; 28(2): 1083-97, 2011 Feb.
Article
in English
| MEDLINE | ID: mdl-21037205
20.
The early stage of bacterial genome-reductive evolution in the host.
PLoS Pathog
; 6(5): e1000922, 2010 May 27.
Article
in English
| MEDLINE | ID: mdl-20523904