Search | VHL CLAP/WR-PAHO/WHO

1.

SnapShot: Replication timing.

Pope, Benjamin D; Aparicio, Oscar M; Gilbert, David M.

Cell ; 152(6): 1390-1390.e1, 2013 Mar 14.

Article in English | MEDLINE | ID: mdl-23498945

2.

Topologically associating domains are stable units of replication-timing regulation.

Pope, Benjamin D; Ryba, Tyrone; Dileep, Vishnu; Yue, Feng; Wu, Weisheng; Denas, Olgert; Vera, Daniel L; Wang, Yanli; Hansen, R Scott; Canfield, Theresa K; Thurman, Robert E; Cheng, Yong; Gülsoy, Günhan; Dennis, Jonathan H; Snyder, Michael P; Stamatoyannopoulos, John A; Taylor, James; Hardison, Ross C; Kahveci, Tamer; Ren, Bing; Gilbert, David M.

Nature ; 515(7527): 402-5, 2014 Nov 20.

Article in English | MEDLINE | ID: mdl-25409831

3.

A comparative encyclopedia of DNA elements in the mouse genome.

Yue, Feng; Cheng, Yong; Breschi, Alessandra; Vierstra, Jeff; Wu, Weisheng; Ryba, Tyrone; Sandstrom, Richard; Ma, Zhihai; Davis, Carrie; Pope, Benjamin D; Shen, Yin; Pervouchine, Dmitri D; Djebali, Sarah; Thurman, Robert E; Kaul, Rajinder; Rynes, Eric; Kirilusha, Anthony; Marinov, Georgi K; Williams, Brian A; Trout, Diane; Amrhein, Henry; Fisher-Aylor, Katherine; Antoshechkin, Igor; DeSalvo, Gilberto; See, Lei-Hoon; Fastuca, Meagan; Drenkow, Jorg; Zaleski, Chris; Dobin, Alex; Prieto, Pablo; Lagarde, Julien; Bussotti, Giovanni; Tanzer, Andrea; Denas, Olgert; Li, Kanwei; Bender, M A; Zhang, Miaohua; Byron, Rachel; Groudine, Mark T; McCleary, David; Pham, Long; Ye, Zhen; Kuan, Samantha; Edsall, Lee; Wu, Yi-Chieh; Rasmussen, Matthew D; Bansal, Mukul S; Kellis, Manolis; Keller, Cheryl A; Morrissey, Christapher S.

Nature ; 515(7527): 355-64, 2014 Nov 20.

Article in English | MEDLINE | ID: mdl-25409824

4.

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation.

Chandra, Tamir; Kirschner, Kristina; Thuret, Jean-Yves; Pope, Benjamin D; Ryba, Tyrone; Newman, Scott; Ahmed, Kashif; Samarajiwa, Shamith A; Salama, Rafik; Carroll, Thomas; Stark, Rory; Janky, Rekin's; Narita, Masako; Xue, Lixiang; Chicas, Agustin; Nunez, Sabrina; Janknecht, Ralf; Hayashi-Takanaka, Yoko; Wilson, Michael D; Marshall, Aileen; Odom, Duncan T; Babu, M Madan; Bazett-Jones, David P; Tavaré, Simon; Edwards, Paul A W; Lowe, Scott W; Kimura, Hiroshi; Gilbert, David M; Narita, Masashi.

Mol Cell ; 47(2): 203-14, 2012 Jul 27.

Article in English | MEDLINE | ID: mdl-22795131

5.

Many paths lead chromatin to the nuclear periphery.

Gordon, Molly R; Pope, Benjamin D; Sima, Jiao; Gilbert, David M.

Bioessays ; 37(8): 862-6, 2015 Aug.

Article in English | MEDLINE | ID: mdl-26060083

6.

Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia.

Ryba, Tyrone; Battaglia, Dana; Chang, Bill H; Shirley, James W; Buckley, Quinton; Pope, Benjamin D; Devidas, Meenakshi; Druker, Brian J; Gilbert, David M.

Genome Res ; 22(10): 1833-44, 2012 Oct.

Article in English | MEDLINE | ID: mdl-22628462

7.

Genetics: Up and down in Down's syndrome.

Pope, Benjamin D; Gilbert, David M.

Nature ; 508(7496): 323-4, 2014 Apr 17.

Article in English | MEDLINE | ID: mdl-24740061

8.

Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse.

Pope, Benjamin D; Chandra, Tamir; Buckley, Quinton; Hoare, Matthew; Ryba, Tyrone; Wiseman, Frances K; Kuta, Anna; Wilson, Michael D; Odom, Duncan T; Gilbert, David M.

Hum Mol Genet ; 21(19): 4162-70, 2012 Oct 01.

Article in English | MEDLINE | ID: mdl-22736031

9.

Domain-wide regulation of DNA replication timing during mammalian development.

Pope, Benjamin D; Hiratani, Ichiro; Gilbert, David M.

Chromosome Res ; 18(1): 127-36, 2010 Jan.

Article in English | MEDLINE | ID: mdl-20013151

10.

Building Biomimetic Potency Tests for Islet Transplantation.

Glieberman, Aaron L; Pope, Benjamin D; Melton, Douglas A; Parker, Kevin Kit.

Diabetes ; 70(2): 347-363, 2021 02.

Article in English | MEDLINE | ID: mdl-33472944

11.

The role of extracellular matrix in normal and pathological pregnancy: Future applications of microphysiological systems in reproductive medicine.

O'Connor, Blakely B; Pope, Benjamin D; Peters, Michael M; Ris-Stalpers, Carrie; Parker, Kevin K.

Exp Biol Med (Maywood) ; 245(13): 1163-1174, 2020 07.

Article in English | MEDLINE | ID: mdl-32640894

12.

Mitoregulin Controls ß-Oxidation in Human and Mouse Adipocytes.

Friesen, Max; Warren, Curtis R; Yu, Haojie; Toyohara, Takafumi; Ding, Qiurong; Florido, Mary H C; Sayre, Carolyn; Pope, Benjamin D; Goff, Loyal A; Rinn, John L; Cowan, Chad A.

Stem Cell Reports ; 14(4): 590-602, 2020 04 14.

Article in English | MEDLINE | ID: mdl-32243843

13.

Fattening chips: hypertrophy, feeding, and fasting of human white adipocytes in vitro.

Pope, Benjamin D; Warren, Curtis R; Dahl, Madeleine O; Pizza, Christina V; Henze, Douglas E; Sinatra, Nina R; Gonzalez, Grant M; Chang, Huibin; Liu, Qihan; Glieberman, Aaron L; Ferrier, John P; Cowan, Chad A; Parker, Kevin Kit.

Lab Chip ; 20(22): 4152-4165, 2020 11 10.

Article in English | MEDLINE | ID: mdl-33034335

14.

Synchronized stimulation and continuous insulin sensing in a microfluidic human Islet on a Chip designed for scalable manufacturing.

Glieberman, Aaron L; Pope, Benjamin D; Zimmerman, John F; Liu, Qihan; Ferrier, John P; Kenty, Jennifer H R; Schrell, Adrian M; Mukhitov, Nikita; Shores, Kevin L; Tepole, Adrian Buganza; Melton, Douglas A; Roper, Michael G; Parker, Kevin Kit.

Lab Chip ; 19(18): 2993-3010, 2019 09 10.

Article in English | MEDLINE | ID: mdl-31464325

15.

Production-scale fibronectin nanofibers promote wound closure and tissue repair in a dermal mouse model.

Chantre, Christophe O; Campbell, Patrick H; Golecki, Holly M; Buganza, Adrian T; Capulli, Andrew K; Deravi, Leila F; Dauth, Stephanie; Sheehy, Sean P; Paten, Jeffrey A; Gledhill, Karl; Doucet, Yanne S; Abaci, Hasan E; Ahn, Seungkuk; Pope, Benjamin D; Ruberti, Jeffrey W; Hoerstrup, Simon P; Christiano, Angela M; Parker, Kevin Kit.

Biomaterials ; 166: 96-108, 2018 06.

Article in English | MEDLINE | ID: mdl-29549768

16.

Microenvironmental Control of Adipocyte Fate and Function.

Pope, Benjamin D; Warren, Curtis R; Parker, Kevin Kit; Cowan, Chad A.

Trends Cell Biol ; 26(10): 745-755, 2016 10.

Article in English | MEDLINE | ID: mdl-27268909

17.

The replication domain model: regulating replicon firing in the context of large-scale chromosome architecture.

Pope, Benjamin D; Gilbert, David M.

J Mol Biol ; 425(23): 4690-5, 2013 Nov 29.

Article in English | MEDLINE | ID: mdl-23603017

18.

Genome-scale analysis of replication timing: from bench to bioinformatics.

Ryba, Tyrone; Battaglia, Dana; Pope, Benjamin D; Hiratani, Ichiro; Gilbert, David M.

Nat Protoc ; 6(6): 870-95, 2011 Jun.

Article in English | MEDLINE | ID: mdl-21637205

19.

DNA replication timing is maintained genome-wide in primary human myoblasts independent of D4Z4 contraction in FSH muscular dystrophy.

Pope, Benjamin D; Tsumagari, Koji; Battaglia, Dana; Ryba, Tyrone; Hiratani, Ichiro; Ehrlich, Melanie; Gilbert, David M.

PLoS One ; 6(11): e27413, 2011.

Article in English | MEDLINE | ID: mdl-22096571

VHL CLAP/WR-PAHO/WHO

Latin-American Center for Perinatology, Woman and Reproductive Health

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