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1.
Am J Hum Genet ; 109(10): 1909-1922, 2022 10 06.
Article in English | MEDLINE | ID: mdl-36044892

ABSTRACT

The transmembrane protein TMEM147 has a dual function: first at the nuclear envelope, where it anchors lamin B receptor (LBR) to the inner membrane, and second at the endoplasmic reticulum (ER), where it facilitates the translation of nascent polypeptides within the ribosome-bound TMCO1 translocon complex. Through international data sharing, we identified 23 individuals from 15 unrelated families with bi-allelic TMEM147 loss-of-function variants, including splice-site, nonsense, frameshift, and missense variants. These affected children displayed congruent clinical features including coarse facies, developmental delay, intellectual disability, and behavioral problems. In silico structural analyses predicted disruptive consequences of the identified amino acid substitutions on translocon complex assembly and/or function, and in vitro analyses documented accelerated protein degradation via the autophagy-lysosomal-mediated pathway. Furthermore, TMEM147-deficient cells showed CKAP4 (CLIMP-63) and RTN4 (NOGO) upregulation with a concomitant reorientation of the ER, which was also witnessed in primary fibroblast cell culture. LBR mislocalization and nuclear segmentation was observed in primary fibroblast cells. Abnormal nuclear segmentation and chromatin compaction were also observed in approximately 20% of neutrophils, indicating the presence of a pseudo-Pelger-Huët anomaly. Finally, co-expression analysis revealed significant correlation with neurodevelopmental genes in the brain, further supporting a role of TMEM147 in neurodevelopment. Our findings provide clinical, genetic, and functional evidence that bi-allelic loss-of-function variants in TMEM147 cause syndromic intellectual disability due to ER-translocon and nuclear organization dysfunction.


Subject(s)
Intellectual Disability , Musculoskeletal Abnormalities , Pelger-Huet Anomaly , Cell Nucleus/genetics , Child , Chromatin , Humans , Intellectual Disability/genetics , Loss of Heterozygosity , Pelger-Huet Anomaly/genetics
2.
Eur Arch Otorhinolaryngol ; 280(12): 5649-5654, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37737872

ABSTRACT

PURPOSE: Cholesteatoma is a rare middle ear pathology. It can be classified into acquired and congenital forms. Although benign, cholesteatomas can cause significant morbidity including hearing loss, infection, facial palsy and thrombosis. Congenital cholesteatomas are incredibly rare and bilateral disease has not commonly been published in the literature. METHOD: We describe the case of female identical (monozygotic, monochorionic, diamniotic) twins who both developed congenital cholesteatomas. In this report, we review the aetiology, treatment, embryology and pathology of cholesteatoma. RESULTS: The patients have been followed up 15 years after their initial surgery with promising results - pure-tone audiometry and repeat scans have not illustrated any disease recurrence. CONCLUSION: This paper presents one of the only cases of female monozygotic twins presenting with unilateral and bilateral cholesteatomas.


Subject(s)
Cholesteatoma, Middle Ear , Cholesteatoma , Humans , Female , Cholesteatoma, Middle Ear/surgery , Twins, Monozygotic , Cholesteatoma/congenital , Ear, Middle/pathology , Audiometry, Pure-Tone
3.
Hum Mutat ; 43(7): 963-970, 2022 07.
Article in English | MEDLINE | ID: mdl-35476365

ABSTRACT

Use of blood RNA sequencing (RNA-seq) as a splicing analysis tool for clinical interpretation of variants of uncertain significance (VUSs) found via whole-genome and exome sequencing can be difficult for genes that have low expression in the blood due to insufficient read count coverage aligned to specific genes of interest. Here, we present a short amplicon reverse transcription-polymerase chain reaction(RT-PCR) for the detection of genes with low blood expression. Short amplicon RT-PCR, is designed to span three exons where an exon harboring a variant is flanked by one upstream and one downstream exon. We tested short amplicon RT-PCRs for genes that have median transcripts per million (TPM) values less than one according to the genotype-tissue expression database. Median TPM values of genes analyzed in this study are SYN1 = 0.8549, COL1A1 = 0.6275, TCF4 = 0.4009, DSP = .2894, TTN = 0.2851, COL5A2 = 0.1036, TERT = 0.04452, NTRK2 = 0.0344, ABCA4 = 0.00744, PRPH = 0, and WT1 = 0. All these genes show insufficient exon-spanning read coverage in our RNA-seq data to allow splicing analysis. We successfully detected all genes tested except PRPH and WT1. Aberrant splicing was detected in SYN1, TCF4, NTRK2, TTN, and TERT VUSs. Therefore, our results show short amplicon RT-PCR is a useful alternative for the analysis of splicing events in genes with low TPM in blood RNA for clinical diagnostics.


Subject(s)
Alternative Splicing , RNA , ATP-Binding Cassette Transporters/genetics , Humans , RNA/genetics , RNA Splicing/genetics , Reverse Transcriptase Polymerase Chain Reaction , Reverse Transcription
4.
Am J Med Genet A ; 185(8): 2445-2454, 2021 08.
Article in English | MEDLINE | ID: mdl-34032352

ABSTRACT

Smith-Kingsmore Syndrome (SKS) is a rare genetic syndrome associated with megalencephaly, a variable intellectual disability, autism spectrum disorder, and MTOR gain of function variants. Only 30 patients with MTOR missense variants are published, including 14 (47%) with the MTOR c.5395G>A p.(Glu1799Lys) variant. Limited phenotypic data impacts the quality of information delivered to families and the robustness of interpretation of novel MTOR missense variation. This study aims to improve our understanding of the SKS phenotype through the investigation of 16 further patients with the MTOR c.5395G>A p.(Glu1799Lys) variant. Through the careful phenotypic evaluation of these 16 patients and integration with data from 14 previously reported patients, we have defined major (100% patients) and frequent (>15%) SKS clinical characteristics and, using these data, proposed guidance for evidence-based management. In addition, in the absence of functional studies, we suggest that the combination of the SKS major clinical features of megalencephaly (where the head circumference is at least 3SD) and an intellectual disability with a de novo MTOR missense variant (absent from population databases) should be considered diagnostic for SKS.


Subject(s)
Alleles , Genetic Association Studies , Mutation, Missense , Phenotype , TOR Serine-Threonine Kinases/genetics , Adolescent , Amino Acid Substitution , Autism Spectrum Disorder/diagnosis , Autism Spectrum Disorder/genetics , Child , Child, Preschool , Facies , Female , Genetic Loci , Humans , Intellectual Disability/diagnosis , Intellectual Disability/genetics , Male , Megalencephaly/diagnosis , Megalencephaly/genetics , Syndrome
5.
Hum Genet ; 138(8-9): 1027-1042, 2019 Sep.
Article in English | MEDLINE | ID: mdl-29464339

ABSTRACT

GJA8 encodes connexin 50 (Cx50), a transmembrane protein involved in the formation of lens gap junctions. GJA8 mutations have been linked to early onset cataracts in humans and animal models. In mice, missense mutations and homozygous Gja8 deletions lead to smaller lenses and microphthalmia in addition to cataract, suggesting that Gja8 may play a role in both lens development and ocular growth. Following screening of GJA8 in a cohort of 426 individuals with severe congenital eye anomalies, primarily anophthalmia, microphthalmia and coloboma, we identified four known [p.(Thr39Arg), p.(Trp45Leu), p.(Asp51Asn), and p.(Gly94Arg)] and two novel [p.(Phe70Leu) and p.(Val97Gly)] likely pathogenic variants in seven families. Five of these co-segregated with cataracts and microphthalmia, whereas the variant p.(Gly94Arg) was identified in an individual with congenital aphakia, sclerocornea, microphthalmia and coloboma. Four missense variants of unknown or unlikely clinical significance were also identified. Furthermore, the screening of GJA8 structural variants in a subgroup of 188 individuals identified heterozygous 1q21 microdeletions in five families with coloboma and other ocular and/or extraocular findings. However, the exact genotype-phenotype correlation of these structural variants remains to be established. Our data expand the spectrum of GJA8 variants and associated phenotypes, confirming the importance of this gene in early eye development.


Subject(s)
Connexins/genetics , Eye Abnormalities/genetics , Mutation, Missense/genetics , Cataract/genetics , Cohort Studies , Eye Proteins/genetics , Female , Gap Junctions/genetics , Genetic Association Studies/methods , Heterozygote , Humans , Lens, Crystalline/pathology , Male , Pedigree , Phenotype
6.
Ann Neurol ; 81(4): 597-603, 2017 04.
Article in English | MEDLINE | ID: mdl-28253535

ABSTRACT

We report 2 families with undiagnosed recessive presynaptic congenital myasthenic syndrome (CMS). Whole exome or genome sequencing identified segregating homozygous variants in VAMP1: c.51_64delAGGTGGGGGTCCCC in a Kuwaiti family and c.146G>C in an Israeli family. VAMP1 is crucial for vesicle fusion at presynaptic neuromuscular junction (NMJ). Electrodiagnostic examination showed severely low compound muscle action potentials and presynaptic impairment. We assessed the effect of the nonsense mutation on mRNA levels and evaluated the NMJ transmission in VAMP1lew/lew mice, observing neurophysiological features of presynaptic impairment, similar to the patients. Taken together, our findings highlight VAMP1 homozygous mutations as a cause of presynaptic CMS. Ann Neurol 2017;81:597-603.


Subject(s)
Myasthenic Syndromes, Congenital/genetics , Myasthenic Syndromes, Congenital/physiopathology , Neuromuscular Junction/physiopathology , Vesicle-Associated Membrane Protein 1/genetics , Animals , Child, Preschool , Codon, Nonsense , Consanguinity , Disease Models, Animal , Female , Homozygote , Humans , Israel , Kuwait , Male , Mice , Mice, Transgenic , Pedigree
7.
Brain ; 140(10): 2610-2622, 2017 Oct 01.
Article in English | MEDLINE | ID: mdl-28969385

ABSTRACT

Mutations of genes within the phosphatidylinositol-3-kinase (PI3K)-AKT-MTOR pathway are well known causes of brain overgrowth (megalencephaly) as well as segmental cortical dysplasia (such as hemimegalencephaly, focal cortical dysplasia and polymicrogyria). Mutations of the AKT3 gene have been reported in a few individuals with brain malformations, to date. Therefore, our understanding regarding the clinical and molecular spectrum associated with mutations of this critical gene is limited, with no clear genotype-phenotype correlations. We sought to further delineate this spectrum, study levels of mosaicism and identify genotype-phenotype correlations of AKT3-related disorders. We performed targeted sequencing of AKT3 on individuals with these phenotypes by molecular inversion probes and/or Sanger sequencing to determine the type and level of mosaicism of mutations. We analysed all clinical and brain imaging data of mutation-positive individuals including neuropathological analysis in one instance. We performed ex vivo kinase assays on AKT3 engineered with the patient mutations and examined the phospholipid binding profile of pleckstrin homology domain localizing mutations. We identified 14 new individuals with AKT3 mutations with several phenotypes dependent on the type of mutation and level of mosaicism. Our comprehensive clinical characterization, and review of all previously published patients, broadly segregates individuals with AKT3 mutations into two groups: patients with highly asymmetric cortical dysplasia caused by the common p.E17K mutation, and patients with constitutional AKT3 mutations exhibiting more variable phenotypes including bilateral cortical malformations, polymicrogyria, periventricular nodular heterotopia and diffuse megalencephaly without cortical dysplasia. All mutations increased kinase activity, and pleckstrin homology domain mutants exhibited enhanced phospholipid binding. Overall, our study shows that activating mutations of the critical AKT3 gene are associated with a wide spectrum of brain involvement ranging from focal or segmental brain malformations (such as hemimegalencephaly and polymicrogyria) predominantly due to mosaic AKT3 mutations, to diffuse bilateral cortical malformations, megalencephaly and heterotopia due to constitutional AKT3 mutations. We also provide the first detailed neuropathological examination of a child with extreme megalencephaly due to a constitutional AKT3 mutation. This child has one of the largest documented paediatric brain sizes, to our knowledge. Finally, our data show that constitutional AKT3 mutations are associated with megalencephaly, with or without autism, similar to PTEN-related disorders. Recognition of this broad clinical and molecular spectrum of AKT3 mutations is important for providing early diagnosis and appropriate management of affected individuals, and will facilitate targeted design of future human clinical trials using PI3K-AKT pathway inhibitors.


Subject(s)
Developmental Disabilities/genetics , Megalencephaly/genetics , Mutation/genetics , Proto-Oncogene Proteins c-akt/genetics , Brain/diagnostic imaging , Child , Developmental Disabilities/diagnostic imaging , Developmental Disabilities/pathology , Female , Genetic Association Studies , HEK293 Cells , Humans , Immunoprecipitation , Magnetic Resonance Imaging , Male , Megalencephaly/diagnostic imaging , Megalencephaly/pathology , Mutagenesis, Site-Directed/methods , Phosphatidylinositols/metabolism , Transfection
8.
J Am Soc Nephrol ; 26(4): 797-804, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25145936

ABSTRACT

Urofacial syndrome (UFS) is an autosomal recessive congenital disease featuring grimacing and incomplete bladder emptying. Mutations of HPSE2, encoding heparanase 2, a heparanase 1 inhibitor, occur in UFS, but knowledge about the HPSE2 mutation spectrum is limited. Here, seven UFS kindreds with HPSE2 mutations are presented, including one with deleted asparagine 254, suggesting a role for this amino acid, which is conserved in vertebrate orthologs. HPSE2 mutations were absent in 23 non-neurogenic neurogenic bladder probands and, of 439 families with nonsyndromic vesicoureteric reflux, only one carried a putative pathogenic HPSE2 variant. Homozygous Hpse2 mutant mouse bladders contained urine more often than did wild-type organs, phenocopying human UFS. Pelvic ganglia neural cell bodies contained heparanase 1, heparanase 2, and leucine-rich repeats and immunoglobulin-like domains-2 (LRIG2), which is mutated in certain UFS families. In conclusion, heparanase 2 is an autonomic neural protein implicated in bladder emptying, but HPSE2 variants are uncommon in urinary diseases resembling UFS.


Subject(s)
Glucuronidase/genetics , Urinary Tract/physiopathology , Urologic Diseases/genetics , Animals , Facies , Female , Humans , Male , Mice , Mice, Inbred C57BL , Mutation , Urologic Diseases/physiopathology
9.
Am J Hum Genet ; 91(2): 358-64, 2012 Aug 10.
Article in English | MEDLINE | ID: mdl-22795537

ABSTRACT

Excessive growth of terminal hair around the elbows (hypertrichosis cubiti) has been reported both in isolation and in association with a variable spectrum of associated phenotypic features. We identified a cohort of six individuals with hypertrichosis cubiti associated with short stature, intellectual disability, and a distinctive facial appearance, consistent with a diagnosis of Wiedemann-Steiner syndrome (WSS). Utilizing a whole-exome sequencing approach, we identified de novo mutations in MLL in five of the six individuals. MLL encodes a histone methyltransferase that regulates chromatin-mediated transcription through the catalysis of methylation of histone H3K4. Each of the five mutations is predicted to result in premature termination of the protein product. Furthermore, we demonstrate that transcripts arising from the mutant alleles are subject to nonsense-mediated decay. These findings define the genetic basis of WSS, provide additional evidence for the role of haploinsufficency of histone-modification enzymes in multiple-congenital-anomaly syndromes, and further illustrate the importance of the regulation of histone modification in development.


Subject(s)
Abnormalities, Multiple/genetics , Growth Disorders/genetics , Hypertrichosis/congenital , Myeloid-Lymphoid Leukemia Protein/genetics , Abnormalities, Multiple/pathology , Base Sequence , Exome/genetics , Gene Components , Growth Disorders/pathology , Haploinsufficiency/genetics , Histone-Lysine N-Methyltransferase , Humans , Hypertrichosis/genetics , Hypertrichosis/pathology , Molecular Sequence Data , Mutation/genetics , Sequence Analysis, DNA
10.
Eur J Pediatr ; 174(4): 557-63, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25287621

ABSTRACT

Defects in peroxisomes such as those associated with Zellweger syndrome (ZS) can influence diverse intracellular metabolic pathways, including mitochondrial functioning. We report on an 8-month-old female infant and a 6-month-old female infant with typical clinical, radiological and laboratory features of Zellweger syndrome; light microscopic and ultrastructural evidence of mitochondrial pathology in their muscle biopsies; and homozygous pathogenic mutations of the PEX16 gene (c.460 + 5G > A) and the PEX 12 gene (c.888_889 del p.Leu297Thrfs*12), respectively. Additionally, mitochondrial respiratory chain enzymology analysis in the first girl showed a mildly low activity in complexes II-III and IV. We also review five children previously reported in the literature with a presumptive diagnosis of ZS and additional mitochondrial findings in their muscle biopsies. In conclusion, this is the first study of patients with a molecularly confirmed peroxisomal disorder with features of a concomitant mitochondrial myopathy and underscores the role of secondary mitochondrial dysfunction in Zellweger syndrome, potentially contributing to the clinical phenotype.


Subject(s)
Mitochondria/pathology , Mitochondrial Myopathies/diagnosis , Zellweger Syndrome/diagnosis , Female , Homozygote , Humans , Infant , Magnetic Resonance Imaging , Mitochondrial Myopathies/complications , Mitochondrial Myopathies/genetics , Mutation , Zellweger Syndrome/complications , Zellweger Syndrome/genetics
11.
BMC Nephrol ; 15: 182, 2014 Nov 20.
Article in English | MEDLINE | ID: mdl-25412767

ABSTRACT

BACKGROUND: Autosomal dominant polycystic kidney disease (ADPKD) causes progressive renal damage and is a leading cause of end-stage renal failure. With emerging therapies it is important to devise a method for early detection. We aimed to identify factors from routine clinical data which can be used to distinguish people with a high likelihood of having ADPKD in a primary health care setting. METHOD: A cross-sectional study was undertaken using data from the Quality Intervention in Chronic Kidney Disease trial extracted from 127 primary care practices in England. The health records of 255 people with ADPKD were compared to the general population. Logistic regression was used to identify clinical features which distinguish ADPKD. These clinical features were used to stratify individual risk using a risk score tool. RESULTS: Renal impairment, proteinuria, haematuria, a diastolic blood pressure over 90 mmHg and multiple antihypertensive medications were more common in ADPKD than the general population and were used to build a regression model (area under the receiver operating characteristic curve; 0.79). Age, gender, haemoglobin and urinary tract infections were not associated with ADPKD. A risk score (range -3 to +10) of ≥0 gave a sensitivity of 70.2% and specificity 74.9% of for detection. CONCLUSIONS: Stratification of ADPKD likelihood from routine data may be possible. This approach could be a valuable component of future screening programs although further longitudinal analyses are needed.


Subject(s)
Biomarkers/analysis , Mass Screening/methods , Polycystic Kidney, Autosomal Dominant/diagnosis , Adolescent , Adult , Age Factors , Antihypertensive Agents/therapeutic use , Cross-Sectional Studies , Drug Therapy, Combination , Early Diagnosis , England , Female , Hematuria/etiology , Humans , Hypertension, Renal/drug therapy , Hypertension, Renal/etiology , Kidney Function Tests , Logistic Models , Male , Middle Aged , Polycystic Kidney, Autosomal Dominant/complications , Polycystic Kidney, Autosomal Dominant/urine , Predictive Value of Tests , Primary Health Care , Proteinuria/etiology , Renal Insufficiency, Chronic/epidemiology , Renal Insufficiency, Chronic/etiology , Risk Assessment , Risk Factors , Sensitivity and Specificity , Young Adult
12.
Am J Hum Genet ; 85(3): 414-8, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19732862

ABSTRACT

An autosomal-recessive syndrome of bifid nose and anorectal and renal anomalies (BNAR) was previously reported in a consanguineous Egyptian sibship. Here, we report the results of linkage analysis, on this family and on two other families with a similar phenotype, which identified a shared region of homozygosity on chromosome 9p22.2-p23. Candidate-gene analysis revealed homozygous frameshift and missense mutations in FREM1, which encodes an extracellular matrix component of basement membranes. In situ hybridization experiments demonstrated gene expression of Frem1 in the midline of E11.5 mouse embryos, in agreement with the observed cleft nose phenotype of our patients. FREM1 is part of a ternary complex that includes FRAS1 and FREM2, and mutations of the latter two genes have been reported to cause Fraser syndrome in mice and humans. The phenotypic variability previously reported for different Frem1 mouse mutants suggests that the apparently distinct phenotype of BNAR in humans may represent a previously unrecognized variant of Fraser syndrome.


Subject(s)
Abnormalities, Multiple/genetics , Extracellular Matrix Proteins/genetics , Mutation/genetics , Amino Acid Sequence , Animals , Base Sequence , DNA Mutational Analysis , Extracellular Matrix Proteins/chemistry , Extracellular Matrix Proteins/metabolism , Gene Expression Regulation, Developmental , Mice , Molecular Sequence Data , Nasal Mucosa/metabolism , Nose/embryology , Syndrome
13.
J Med Genet ; 48(4): 273-8, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21266384

ABSTRACT

BACKGROUND: Constitutional DICER1 mutations were recently reported to cause familial pleuropulmonary blastoma (PPB). AIM: To investigate the contribution and phenotypic spectrum of constitutional and somatic DICER1 mutations to cancer. METHODS AND RESULTS: The authors sequenced DICER1 in constitutional DNA from 823 unrelated patients with a variety of tumours and in 781 cancer cell lines. Constitutional DICER1 mutations were identified in 19 families including 11/14 with PPB, 2/3 with cystic nephroma, 4/7 with ovarian Sertoli-Leydig-type tumours, 1/243 with Wilms tumour (this patient also had a Sertoli-Leydig tumour), 1/1 with intraocular medulloepithelioma (this patient also had PPB), 1/86 with medulloblastoma/infratentorial primitive neuroectodermal tumour, and 1/172 with germ cell tumour. The inheritance was investigated in 17 families. DICER1 mutations were identified in 25 relatives: 17 were unaffected, one mother had ovarian Sertoli-Leydig tumour, one half-sibling had cystic nephroma, and six relatives had non-toxic thyroid cysts/goitre. Analysis of eight tumours from DICER1 mutation-positive patients showed universal retention of the wild-type allele. DICER1 truncating mutations were identified in 4/781 cancer cell lines; all were in microsatellite unstable lines and therefore unlikely to be driver mutations. CONCLUSION: Constitutional DICER1 haploinsufficiency predisposes to a broad range of tumours, making a substantial contribution to PPB, cystic nephroma and ovarian Sertoli-Leydig tumours, but a smaller contribution to other tumours. Most mutation carriers are unaffected, indicating that tumour risk is modest. The authors define the clinical contexts in which DICER1 mutation testing should be considered, the associated tumour risks, and the implications for at-risk individuals. They have termed this condition 'DICER1 syndrome'. ACCESSION NUMBERS: The cDNA Genbank accession number for the DICER1 sequence reported in this paper is NM_030621.2.


Subject(s)
DEAD-box RNA Helicases/genetics , Genetic Predisposition to Disease , Neoplasms/genetics , Ribonuclease III/genetics , Cell Line, Tumor , Germ-Line Mutation , Haploinsufficiency , Humans , Molecular Sequence Data , Neoplasms/diagnosis , Sequence Analysis, DNA , Syndrome
14.
Hum Mol Genet ; 18(14): 2643-55, 2009 Jul 15.
Article in English | MEDLINE | ID: mdl-19414485

ABSTRACT

Nance-Horan syndrome (NHS) is an X-linked developmental disorder characterized by congenital cataract, dental anomalies, facial dysmorphism and, in some cases, mental retardation. Protein truncation mutations in a novel gene (NHS) have been identified in patients with this syndrome. We previously mapped X-linked congenital cataract (CXN) in one family to an interval on chromosome Xp22.13 which encompasses the NHS locus; however, no mutations were identified in the NHS gene. In this study, we show that NHS and X-linked cataract are allelic diseases. Two CXN families, which were negative for mutations in the NHS gene, were further analysed using array comparative genomic hybridization. CXN was found to be caused by novel copy number variations: a complex duplication-triplication re-arrangement and an intragenic deletion, predicted to result in altered transcriptional regulation of the NHS gene. Furthermore, we also describe the clinical and molecular analysis of seven families diagnosed with NHS, identifying four novel protein truncation mutations and a novel large deletion encompassing the majority of the NHS gene, all leading to no functional protein. We therefore show that different mechanisms, aberrant transcription of the NHS gene or no functional NHS protein, lead to different diseases. Our data highlight the importance of copy number variation and non-recurrent re-arrangements leading to different severity of disease and describe the potential mechanisms involved.


Subject(s)
Cataract/genetics , Genes, X-Linked , Genetic Diseases, X-Linked/genetics , Nuclear Proteins/genetics , Adult , Base Sequence , Cataract/congenital , Cataract/metabolism , Child , Child, Preschool , Female , Gene Dosage , Genetic Diseases, X-Linked/metabolism , Humans , Infant, Newborn , Male , Membrane Proteins , Middle Aged , Molecular Sequence Data , Nuclear Proteins/metabolism , Pedigree , Young Adult
15.
J Craniofac Surg ; 22(6): 2318-22, 2011 Nov.
Article in English | MEDLINE | ID: mdl-22134267

ABSTRACT

UNLABELLED: Cherubism is a rare, autosomal dominant, mostly self-limiting disease of the jaw. It is characterized by bilateral fibrous tissue hyperplasia, giant cell proliferation, and bony degeneration in the lower facial skeleton, which can result in a massive and severely deforming prominence of the maxillomandibular structure. This case study examines the multidisciplinary management of a severe case of cherubism complicated by neurofibromatosis type 1, 2 codominant nonsegregating conditions that were clinically and genetically diagnosed, an extremely rare combination. Adequate mandibular reduction, reconstruction, and dental implantation afforded good restoration of oral function as well as a marked aesthetic improvement. METHODS: A 14-year-old Fijian girl was referred to our unit for management of severe overgrowth of her mandible that compromised her speech and deglutition. In addition, she displayed clinical features consistent with neurofibromatosis type 1. Radiologic, histologic, and genetic analyses confirmed the diagnosis of both conditions. Our craniofacial multidisciplinary team undertook mandibular reconstruction followed by placement of osseointegrated dental implants. RESULTS: Mandibular reduction, reconstruction, and dental implantation resulted in a significantly improved functional and aesthetic outcome with no further regrowth at 3-year follow-up when she returned to the United Kingdom for osseointegrated dental implant insertion. CONCLUSIONS: The successful outcome of this surgically challenging, grossly disfiguring, and rare condition was largely a result of the combined input from our multidisciplinary team, adequate preoperative planning, and the use of a novel surgical technique in debulking and reconstructing her mandible.


Subject(s)
Cherubism/surgery , Mandible/abnormalities , Mandible/surgery , Neurofibromatosis 1/surgery , Plastic Surgery Procedures/methods , Adolescent , Cherubism/complications , Esthetics , Female , Humans , Neurofibromatosis 1/complications
16.
Hum Mutat ; 31(8): E1622-31, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20564469

ABSTRACT

Ectopia lentis (EL) is genetically heterogeneous with both autosomal-dominant and -recessive forms. The dominant disorder can be caused by mutations in FBN1, at the milder end of the type-1 fibrillinopathies spectrum. Recently in a consanguineous Jordanian family, recessive EL was mapped to locus 1q21 containing the ADAMTSL4 gene and a nonsense mutation was found in exon 11 (c.1785T>G, p.Y595X). In this study, 36 consecutive probands with EL who did not fulfill the Ghent criteria for MFS were screened for mutations in FBN1 and ADAMTSL4. Causative FBN1 mutations were identified in 23/36 (64%) of probands while homozygous or compound heterozygous ADAMTSL4 mutations were identified in 6/12 (50%) of the remaining probands. Where available, familial screening of these families confirmed the mutation co-segregated with the EL phenotype. This study confirms that homozygous mutations in ADAMTSL4 are associated with autosomal-recessive EL in British families. Furthermore; the first compound heterozygous mutation is described resulting in a PTC and a missense mutation in the PLAC (protease and lacunin) domain. The identification of a causative mutation in ADAMTSL4 may allow the exclusion of Marfan syndrome in these families and guide the clinical management, of particular relevance in young children affected by EL.


Subject(s)
Ectopia Lentis/genetics , Microfilament Proteins/genetics , Mutation/genetics , Thrombospondins/genetics , ADAMTS Proteins , Adolescent , Adult , Child , Child, Preschool , DNA Mutational Analysis , Female , Fibrillin-1 , Fibrillins , Heterozygote , Homozygote , Humans , Male , Pedigree
17.
Hum Mutat ; 31(9): 992-1002, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20556798

ABSTRACT

Mutations of LAMB2 typically cause autosomal recessive Pierson syndrome, a disorder characterized by congenital nephrotic syndrome, ocular and neurologic abnormalities, but may occasionally be associated with milder or oligosymptomatic disease variants. LAMB2 encodes the basement membrane protein laminin beta2, which is incorporated in specific heterotrimeric laminin isoforms and has an expression pattern corresponding to the pattern of organ manifestations in Pierson syndrome. Herein we review all previously reported and several novel LAMB2 mutations in relation to the associated phenotype in patients from 39 unrelated families. The majority of disease-causing LAMB2 mutations are truncating, consistent with the hypothesis that loss of laminin beta2 function is the molecular basis of Pierson syndrome. Although truncating mutations are distributed across the entire gene, missense mutations are clearly clustered in the N-terminal LN domain, which is important for intermolecular interactions. There is an association of missense mutations and small in frame deletions with a higher mean age at onset of renal disease and with absence of neurologic abnormalities, thus suggesting that at least some of these may represent hypomorphic alleles. Nevertheless, genotype alone does not appear to explain the full range of clinical variability, and therefore hitherto unidentified modifiers are likely to exist.


Subject(s)
Genetic Predisposition to Disease , Laminin/genetics , Mutation/genetics , Genetic Association Studies , Haplotypes/genetics , Humans , Laminin/chemistry , Phenotype
18.
Commun Biol ; 3(1): 180, 2020 04 20.
Article in English | MEDLINE | ID: mdl-32313182

ABSTRACT

Language development builds upon a complex network of interacting subservient systems. It therefore follows that variations in, and subclinical disruptions of, these systems may have secondary effects on emergent language. In this paper, we consider the relationship between genetic variants, hearing, auditory processing and language development. We employ whole genome sequencing in a discovery family to target association and gene x environment interaction analyses in two large population cohorts; the Avon Longitudinal Study of Parents and Children (ALSPAC) and UK10K. These investigations indicate that USH2A variants are associated with altered low-frequency sound perception which, in turn, increases the risk of developmental language disorder. We further show that Ush2a heterozygote mice have low-level hearing impairments, persistent higher-order acoustic processing deficits and altered vocalizations. These findings provide new insights into the complexity of genetic mechanisms serving language development and disorders and the relationships between developmental auditory and neural systems.


Subject(s)
Auditory Perception/genetics , Auditory Perceptual Disorders/genetics , Child Language , Extracellular Matrix Proteins/genetics , Hearing Disorders/genetics , Hearing/genetics , Language Development Disorders/genetics , Polymorphism, Single Nucleotide , Age Factors , Animals , Auditory Perceptual Disorders/physiopathology , Auditory Perceptual Disorders/psychology , Child , Child, Preschool , Female , Gene-Environment Interaction , Genetic Predisposition to Disease , Genome-Wide Association Study , Hearing Disorders/physiopathology , Hearing Disorders/psychology , Heterozygote , Humans , Language Development Disorders/physiopathology , Language Development Disorders/psychology , Longitudinal Studies , Male , Mice, 129 Strain , Mice, Knockout , Phenotype , Risk Assessment , Risk Factors , United Kingdom , Vocalization, Animal , Whole Genome Sequencing
19.
Nat Commun ; 11(1): 1044, 2020 02 25.
Article in English | MEDLINE | ID: mdl-32098966

ABSTRACT

The inclusion of familial myeloid malignancies as a separate disease entity in the revised WHO classification has renewed efforts to improve the recognition and management of this group of at risk individuals. Here we report a cohort of 86 acute myeloid leukemia (AML) and myelodysplastic syndrome (MDS) families with 49 harboring germline variants in 16 previously defined loci (57%). Whole exome sequencing in a further 37 uncharacterized families (43%) allowed us to rationalize 65 new candidate loci, including genes mutated in rare hematological syndromes (ADA, GP6, IL17RA, PRF1 and SEC23B), reported in prior MDS/AML or inherited bone marrow failure series (DNAH9, NAPRT1 and SH2B3) or variants at novel loci (DHX34) that appear specific to inherited forms of myeloid malignancies. Altogether, our series of MDS/AML families offer novel insights into the etiology of myeloid malignancies and provide a framework to prioritize variants for inclusion into routine diagnostics and patient management.


Subject(s)
Germ-Line Mutation , Leukemia, Myeloid, Acute/genetics , Myelodysplastic Syndromes/genetics , Adaptor Proteins, Signal Transducing/genetics , Adenosine Deaminase/genetics , Axonemal Dyneins/genetics , Cohort Studies , Humans , Nonsense Mediated mRNA Decay , Pedigree , Perforin/genetics , Platelet Membrane Glycoproteins/genetics , RNA Helicases/genetics , Receptors, Interleukin-17/genetics , Vesicular Transport Proteins/genetics , Exome Sequencing
20.
Brain Dev ; 39(3): 271-274, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27793435

ABSTRACT

Pelizaeus-Merzbacher disease (PMD) is a rare, X-linked disorder characterized by hypomyelination of the Central Nervous System due to mutations in the PLP1 gene. Certain mutations of the PLP1 gene correlate with specific clinical phenotypes and neuroimaging findings. We herein report a novel mutation of the PLP1 gene in two siblings with PMD associated with a rare and protean neuroimaging finding of optic nerve enlargement. To the best of our knowledge this is the first time that this novel mutation H133P of PLP1 gene is identified and clinically associated with optic nerve enlargement in PMD patients.


Subject(s)
Magnetic Resonance Imaging , Mutation/genetics , Myelin Proteolipid Protein/genetics , Optic Nerve/pathology , Pelizaeus-Merzbacher Disease/genetics , Child , Humans , Magnetic Resonance Imaging/methods , Male , Pelizaeus-Merzbacher Disease/diagnosis , Phenotype , Siblings
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