Search details
1.
Entropy predicts sensitivity of pseudorandom seeds.
Genome Res
; 33(7): 1162-1174, 2023 07.
Article
in English
| MEDLINE | ID: mdl-37217253
2.
Efficient mapping of accurate long reads in minimizer space with mapquik.
Genome Res
; 33(7): 1188-1197, 2023 07.
Article
in English
| MEDLINE | ID: mdl-37399256
3.
Designing efficient randstrobes for sequence similarity analyses.
Bioinformatics
; 40(4)2024 Mar 29.
Article
in English
| MEDLINE | ID: mdl-38579261
4.
Effective sequence similarity detection with strobemers.
Genome Res
; 31(11): 2080-2094, 2021 11.
Article
in English
| MEDLINE | ID: mdl-34667119
5.
isONform: reference-free transcriptome reconstruction from Oxford Nanopore data.
Bioinformatics
; 39(39 Suppl 1): i222-i231, 2023 06 30.
Article
in English
| MEDLINE | ID: mdl-37387174
6.
Accurate spliced alignment of long RNA sequencing reads.
Bioinformatics
; 37(24): 4643-4651, 2021 12 11.
Article
in English
| MEDLINE | ID: mdl-34302453
7.
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies.
BMC Genomics
; 20(1): 641, 2019 Aug 09.
Article
in English
| MEDLINE | ID: mdl-31399045
8.
The Norway spruce genome sequence and conifer genome evolution.
Nature
; 497(7451): 579-84, 2013 May 30.
Article
in English
| MEDLINE | ID: mdl-23698360
9.
Assembly scaffolding with PE-contaminated mate-pair libraries.
Bioinformatics
; 32(13): 1925-32, 2016 07 01.
Article
in English
| MEDLINE | ID: mdl-27153683
10.
BESST--efficient scaffolding of large fragmented assemblies.
BMC Bioinformatics
; 15: 281, 2014 Aug 15.
Article
in English
| MEDLINE | ID: mdl-25128196
11.
Improved gap size estimation for scaffolding algorithms.
Bioinformatics
; 28(17): 2215-22, 2012 Sep 01.
Article
in English
| MEDLINE | ID: mdl-22923455
12.
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes.
bioRxiv
; 2023 Mar 18.
Article
in English
| MEDLINE | ID: mdl-36993458
13.
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes.
Genome Biol Evol
; 15(11)2023 Nov 01.
Article
in English
| MEDLINE | ID: mdl-37967251
14.
A survey of mapping algorithms in the long-reads era.
Genome Biol
; 24(1): 133, 2023 06 01.
Article
in English
| MEDLINE | ID: mdl-37264447
15.
Nanopore sequencing of PCR products enables multicopy gene family reconstruction.
Comput Struct Biotechnol J
; 21: 3656-3664, 2023.
Article
in English
| MEDLINE | ID: mdl-37533804
16.
Strobealign: flexible seed size enables ultra-fast and accurate read alignment.
Genome Biol
; 23(1): 260, 2022 12 15.
Article
in English
| MEDLINE | ID: mdl-36522758
17.
Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG.
IEEE/ACM Trans Comput Biol Bioinform
; 19(6): 3673-3684, 2022.
Article
in English
| MEDLINE | ID: mdl-34847041
18.
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment.
Nat Protoc
; 17(6): 1415-1443, 2022 06.
Article
in English
| MEDLINE | ID: mdl-35411044
19.
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis.
Nat Commun
; 12(1): 2, 2021 01 04.
Article
in English
| MEDLINE | ID: mdl-33397972
20.
NGSpeciesID: DNA barcode and amplicon consensus generation from long-read sequencing data.
Ecol Evol
; 11(3): 1392-1398, 2021 Feb.
Article
in English
| MEDLINE | ID: mdl-33598139