Search details
1.
Clustering predicted structures at the scale of the known protein universe.
Nature
; 622(7983): 637-645, 2023 Oct.
Article
in English
| MEDLINE | ID: mdl-37704730
2.
Novel machine learning approaches revolutionize protein knowledge.
Trends Biochem Sci
; 48(4): 345-359, 2023 04.
Article
in English
| MEDLINE | ID: mdl-36504138
3.
Metabuli: sensitive and specific metagenomic classification via joint analysis of amino acid and DNA.
Nat Methods
; 2024 May 20.
Article
in English
| MEDLINE | ID: mdl-38769467
4.
Highly accurate protein structure prediction with AlphaFold.
Nature
; 596(7873): 583-589, 2021 08.
Article
in English
| MEDLINE | ID: mdl-34265844
5.
DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options.
Nucleic Acids Res
; 52(D1): D426-D433, 2024 Jan 05.
Article
in English
| MEDLINE | ID: mdl-37933852
6.
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.
Nucleic Acids Res
; 52(D1): D368-D375, 2024 Jan 05.
Article
in English
| MEDLINE | ID: mdl-37933859
7.
Qualitative metabolomics-based characterization of a phenolic UDP-xylosyltransferase with a broad substrate spectrum from Lentinus brumalis.
Proc Natl Acad Sci U S A
; 120(28): e2301007120, 2023 07 11.
Article
in English
| MEDLINE | ID: mdl-37399371
8.
ColabFold: making protein folding accessible to all.
Nat Methods
; 19(6): 679-682, 2022 06.
Article
in English
| MEDLINE | ID: mdl-35637307
9.
UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi.
Nucleic Acids Res
; 51(D1): D777-D784, 2023 01 06.
Article
in English
| MEDLINE | ID: mdl-36271795
10.
Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices.
Bioinformatics
; 39(8)2023 08 01.
Article
in English
| MEDLINE | ID: mdl-37535681
11.
Foldcomp: a library and format for compressing and indexing large protein structure sets.
Bioinformatics
; 39(4)2023 04 03.
Article
in English
| MEDLINE | ID: mdl-36961332
12.
Evolutionary balance between foldability and functionality of a glucose transporter.
Nat Chem Biol
; 18(7): 713-723, 2022 07.
Article
in English
| MEDLINE | ID: mdl-35484435
13.
PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools.
Bioinformatics
; 38(5): 1440-1442, 2022 02 07.
Article
in English
| MEDLINE | ID: mdl-34734986
14.
DescribePROT: database of amino acid-level protein structure and function predictions.
Nucleic Acids Res
; 49(D1): D298-D308, 2021 01 08.
Article
in English
| MEDLINE | ID: mdl-33119734
15.
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res
; 49(W1): W535-W540, 2021 07 02.
Article
in English
| MEDLINE | ID: mdl-33999203
16.
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold.
Nat Methods
; 16(7): 603-606, 2019 07.
Article
in English
| MEDLINE | ID: mdl-31235882
17.
Applying and improving AlphaFold at CASP14.
Proteins
; 89(12): 1711-1721, 2021 12.
Article
in English
| MEDLINE | ID: mdl-34599769
18.
Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping.
Mod Pathol
; 34(6): 1093-1103, 2021 06.
Article
in English
| MEDLINE | ID: mdl-33536572
19.
MMseqs2 desktop and local web server app for fast, interactive sequence searches.
Bioinformatics
; 35(16): 2856-2858, 2019 08 15.
Article
in English
| MEDLINE | ID: mdl-30615063
20.
HH-suite3 for fast remote homology detection and deep protein annotation.
BMC Bioinformatics
; 20(1): 473, 2019 Sep 14.
Article
in English
| MEDLINE | ID: mdl-31521110