Search details
1.
KETCHUP: Parameterizing of large-scale kinetic models using multiple datasets with different reference states.
Metab Eng
; 82: 123-133, 2024 Mar.
Article
in English
| MEDLINE | ID: mdl-38336004
2.
Comparative study of two Saccharomyces cerevisiae strains with kinetic models at genome-scale.
Metab Eng
; 76: 1-17, 2023 03.
Article
in English
| MEDLINE | ID: mdl-36603705
3.
Recent advances in constraint and machine learning-based metabolic modeling by leveraging stoichiometric balances, thermodynamic feasibility and kinetic law formalisms.
Metab Eng
; 63: 13-33, 2021 01.
Article
in English
| MEDLINE | ID: mdl-33310118
4.
Impactful Approaches to Leadership on the Front Lines of the COVID-19 Pandemic: Lived Experiences of Canadian Paramedics.
Healthc Q
; 24(3): 42-47, 2021 Oct.
Article
in English
| MEDLINE | ID: mdl-34792447
5.
Orchestrating hi-fi annotations.
Nat Chem Biol
; 8(10): 810-1, 2012 Oct.
Article
in English
| MEDLINE | ID: mdl-22987007
6.
Metabolic engineering of low-pH-tolerant non-model yeast, Issatchenkia orientalis, for production of citramalate.
Metab Eng Commun
; 16: e00220, 2023 Jun.
Article
in English
| MEDLINE | ID: mdl-36860699
7.
MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases.
BMC Bioinformatics
; 13: 6, 2012 Jan 10.
Article
in English
| MEDLINE | ID: mdl-22233419
8.
Mathematical optimization applications in metabolic networks.
Metab Eng
; 14(6): 672-86, 2012 Nov.
Article
in English
| MEDLINE | ID: mdl-23026121
9.
Examining organic acid production potential and growth-coupled strategies in Issatchenkia orientalis using constraint-based modeling.
Biotechnol Prog
; 38(5): e3276, 2022 09.
Article
in English
| MEDLINE | ID: mdl-35603544
10.
Construction of an E. Coli genome-scale atom mapping model for MFA calculations.
Biotechnol Bioeng
; 108(6): 1372-82, 2011 Jun.
Article
in English
| MEDLINE | ID: mdl-21328316
11.
OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions.
PLoS Comput Biol
; 6(4): e1000744, 2010 Apr 15.
Article
in English
| MEDLINE | ID: mdl-20419153
12.
Building kinetic models for metabolic engineering.
Curr Opin Biotechnol
; 67: 35-41, 2021 02.
Article
in English
| MEDLINE | ID: mdl-33360621
13.
Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain.
J Biol Chem
; 284(43): 29480-8, 2009 Oct 23.
Article
in English
| MEDLINE | ID: mdl-19690172
14.
Improved computational performance of MFA using elementary metabolite units and flux coupling.
Metab Eng
; 12(2): 123-8, 2010 Mar.
Article
in English
| MEDLINE | ID: mdl-19837183
15.
Genome-scale gene/reaction essentiality and synthetic lethality analysis.
Mol Syst Biol
; 5: 301, 2009.
Article
in English
| MEDLINE | ID: mdl-19690570
16.
A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189.
PLoS Comput Biol
; 5(2): e1000285, 2009 Feb.
Article
in English
| MEDLINE | ID: mdl-19214212
17.
Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalis SD108 and its application to organic acids production.
Metab Eng Commun
; 11: e00148, 2020 Dec.
Article
in English
| MEDLINE | ID: mdl-33134082
18.
A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data.
Metab Eng Commun
; 9: e00101, 2019 Dec.
Article
in English
| MEDLINE | ID: mdl-31720216
19.
Identification of optimal measurement sets for complete flux elucidation in metabolic flux analysis experiments.
Biotechnol Bioeng
; 100(6): 1039-49, 2008 Aug 15.
Article
in English
| MEDLINE | ID: mdl-18553391
20.
Zea mays iRS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism.
PLoS One
; 6(7): e21784, 2011.
Article
in English
| MEDLINE | ID: mdl-21755001