Search details
1.
The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development.
Cell
; 158(5): 1187-1198, 2014 Aug 28.
Article
in English
| MEDLINE | ID: mdl-25171416
2.
Chromatin remodeling is required for sRNA-guided DNA elimination in Paramecium.
EMBO J
; 41(22): e111839, 2022 11 17.
Article
in English
| MEDLINE | ID: mdl-36221862
3.
Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma.
Proc Natl Acad Sci U S A
; 120(4): e2213887120, 2023 Jan 24.
Article
in English
| MEDLINE | ID: mdl-36669098
4.
MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma.
Proc Natl Acad Sci U S A
; 120(4): e2213985120, 2023 Jan 24.
Article
in English
| MEDLINE | ID: mdl-36669106
5.
BleTIES: annotation of natural genome editing in ciliates using long read sequencing.
Bioinformatics
; 37(21): 3929-3931, 2021 11 05.
Article
in English
| MEDLINE | ID: mdl-34487139
6.
The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.
PLoS Biol
; 11(1): e1001473, 2013.
Article
in English
| MEDLINE | ID: mdl-23382650
7.
Paramecium tetraurelia chromatin assembly factor-1-like protein PtCAF-1 is involved in RNA-mediated control of DNA elimination.
Nucleic Acids Res
; 42(19): 11952-64, 2014 Oct 29.
Article
in English
| MEDLINE | ID: mdl-25270876
8.
Genome-wide analysis of genetic and epigenetic control of programmed DNA deletion.
Nucleic Acids Res
; 42(14): 8970-83, 2014 Aug.
Article
in English
| MEDLINE | ID: mdl-25016527
9.
Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.
Nucleic Acids Res
; 39(17): 7529-47, 2011 Sep 01.
Article
in English
| MEDLINE | ID: mdl-21715380
10.
Early developmental, meiosis-specific proteins - Spo11, Msh4-1, and Msh5 - Affect subsequent genome reorganization in Paramecium tetraurelia.
Biochim Biophys Acta Mol Cell Res
; 1869(6): 119239, 2022 06.
Article
in English
| MEDLINE | ID: mdl-35181406
11.
A small RNA-guided PRC2 complex eliminates DNA as an extreme form of transposon silencing.
Cell Rep
; 40(8): 111263, 2022 08 23.
Article
in English
| MEDLINE | ID: mdl-36001962
12.
The macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation.
Sci Rep
; 11(1): 18782, 2021 09 21.
Article
in English
| MEDLINE | ID: mdl-34548559
13.
Two Sets of Piwi Proteins Are Involved in Distinct sRNA Pathways Leading to Elimination of Germline-Specific DNA.
Cell Rep
; 20(2): 505-520, 2017 07 11.
Article
in English
| MEDLINE | ID: mdl-28700949
14.
The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell.
Curr Biol
; 27(4): 569-575, 2017 Feb 20.
Article
in English
| MEDLINE | ID: mdl-28190732
15.
The eukaryotic way to defend and edit genomes by sRNA-targeted DNA deletion.
Ann N Y Acad Sci
; 1341: 106-14, 2015 Apr.
Article
in English
| MEDLINE | ID: mdl-25581723
16.
FRAGS: estimation of coding sequence substitution rates from fragmentary data.
BMC Bioinformatics
; 5: 8, 2004 Jan 29.
Article
in English
| MEDLINE | ID: mdl-15005802
17.
Functional diversification of Dicer-like proteins and small RNAs required for genome sculpting.
Dev Cell
; 28(2): 174-88, 2014 Jan 27.
Article
in English
| MEDLINE | ID: mdl-24439910
18.
Pdsg1 and Pdsg2, novel proteins involved in developmental genome remodelling in Paramecium.
PLoS One
; 9(11): e112899, 2014.
Article
in English
| MEDLINE | ID: mdl-25397898
19.
The draft assembly of the radically organized Stylonychia lemnae macronuclear genome.
Genome Biol Evol
; 6(7): 1707-23, 2014 Jun 20.
Article
in English
| MEDLINE | ID: mdl-24951568
20.
Characterization and taxonomic validity of the ciliate Oxytricha trifallax (Class Spirotrichea) based on multiple gene sequences: limitations in identifying genera solely by morphology.
Protist
; 163(4): 643-57, 2012 Jul.
Article
in English
| MEDLINE | ID: mdl-22325790