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1.
Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro.
Nucleic Acids Res
; 52(1): e4, 2024 Jan 11.
Article
in English
| MEDLINE | ID: mdl-37973397
2.
Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data using DeTREM.
BMC Bioinformatics
; 24(1): 349, 2023 Sep 19.
Article
in English
| MEDLINE | ID: mdl-37726653
3.
A systematic review and meta-analysis of neuromodulators to treat chronic airway hypersensitivity.
Am J Otolaryngol
; 44(3): 103815, 2023.
Article
in English
| MEDLINE | ID: mdl-36870112
4.
Controlled Human Malaria Infection Leads to Long-Lasting Changes in Innate and Innate-like Lymphocyte Populations.
J Immunol
; 199(1): 107-118, 2017 07 01.
Article
in English
| MEDLINE | ID: mdl-28576979
5.
Detecting differential patterns of interaction in molecular pathways.
Biostatistics
; 16(2): 240-51, 2015 Apr.
Article
in English
| MEDLINE | ID: mdl-25519431
6.
Characterization and decontamination of background noise in droplet-based single-cell protein expression data with DecontPro.
bioRxiv
; 2023 Feb 24.
Article
in English
| MEDLINE | ID: mdl-36865227
7.
Socioeconomic disparities in treatment and survival in patients with hypopharyngeal malignancy.
Head Neck
; 45(10): 2670-2679, 2023 10.
Article
in English
| MEDLINE | ID: mdl-37638612
8.
Characterization of highly active mutational signatures in tumors from a large Chinese population.
medRxiv
; 2023 Nov 04.
Article
in English
| MEDLINE | ID: mdl-37961450
9.
Interactive analysis of single-cell data using flexible workflows with SCTK2.
Patterns (N Y)
; 4(8): 100814, 2023 Aug 11.
Article
in English
| MEDLINE | ID: mdl-37602214
10.
Celda: a Bayesian model to perform co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data.
NAR Genom Bioinform
; 4(3): lqac066, 2022 Sep.
Article
in English
| MEDLINE | ID: mdl-36110899
11.
Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data.
Nat Commun
; 13(1): 1688, 2022 03 30.
Article
in English
| MEDLINE | ID: mdl-35354805
12.
The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the Discovery, Prediction, and Exploration of Mutational Signatures.
Cancer Res
; 81(23): 5813-5817, 2021 12 01.
Article
in English
| MEDLINE | ID: mdl-34625425
13.
Drug repositioning candidates identified using in-silico quasi-quantum molecular simulation demonstrate reduced COVID-19 mortality in 1.5M patient records.
medRxiv
; 2021 Apr 06.
Article
in English
| MEDLINE | ID: mdl-33851170
14.
Decontamination of ambient RNA in single-cell RNA-seq with DecontX.
Genome Biol
; 21(1): 57, 2020 03 05.
Article
in English
| MEDLINE | ID: mdl-32138770
15.
PKC downregulation upon rapamycin treatment attenuates mitochondrial disease.
Nat Metab
; 2(12): 1472-1481, 2020 12.
Article
in English
| MEDLINE | ID: mdl-33324011
16.
Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program.
Nat Commun
; 11(1): 2611, 2020 05 26.
Article
in English
| MEDLINE | ID: mdl-32457298
17.
Clonal kinetics and single-cell transcriptional profiling of CAR-T cells in patients undergoing CD19 CAR-T immunotherapy.
Nat Commun
; 11(1): 219, 2020 01 10.
Article
in English
| MEDLINE | ID: mdl-31924795
18.
Transient rapamycin treatment can increase lifespan and healthspan in middle-aged mice.
Elife
; 52016 08 23.
Article
in English
| MEDLINE | ID: mdl-27549339
19.
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.
Genome Biol
; 16: 278, 2015 Dec 10.
Article
in English
| MEDLINE | ID: mdl-26653891
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