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1.
EMBO J ; 42(17): e113415, 2023 09 04.
Artículo en Inglés | MEDLINE | ID: mdl-37485728

RESUMEN

The human ABC transporter ABCC3 (also known as MRP3) transports a wide spectrum of substrates, including endogenous metabolites and exogenous drugs. Accordingly, it participates in multiple physiological processes and is involved in diverse human diseases such as intrahepatic cholestasis of pregnancy, which is caused by the intracellular accumulation of bile acids and estrogens. Here, we report three cryogenic electron microscopy structures of ABCC3: in the apo-form and in complexed forms bound to either the conjugated sex hormones ß-estradiol 17-(ß-D-glucuronide) and dehydroepiandrosterone sulfate. For both hormones, the steroid nuclei that superimpose against each other occupy the hydrophobic center of the transport cavity, whereas the two conjugation groups are separated and fixed by the hydrophilic patches in two transmembrane domains. Structural analysis combined with site-directed mutagenesis and ATPase activity assays revealed that ABCC3 possesses an amphiphilic substrate-binding pocket able to hold either conjugated hormone in an asymmetric pattern. These data build on consensus features of the substrate-binding pocket of MRPs and provide a structural platform for the rational design of inhibitors.


Asunto(s)
Transportadoras de Casetes de Unión a ATP , Estradiol , Humanos , Transportadoras de Casetes de Unión a ATP/genética , Estradiol/farmacología , Estradiol/metabolismo , Mutagénesis Sitio-Dirigida
2.
Proc Natl Acad Sci U S A ; 121(11): e2318320121, 2024 Mar 12.
Artículo en Inglés | MEDLINE | ID: mdl-38457518

RESUMEN

Coordinated carbon and nitrogen metabolism is crucial for bacteria living in the fluctuating environments. Intracellular carbon and nitrogen homeostasis is maintained by a sophisticated network, in which the widespread signaling protein PII acts as a major regulatory hub. In cyanobacteria, PII was proposed to regulate the nitrate uptake by an ABC (ATP-binding cassette)-type nitrate transporter NrtABCD, in which the nucleotide-binding domain of NrtC is fused with a C-terminal regulatory domain (CRD). Here, we solved three cryoelectron microscopy structures of NrtBCD, bound to nitrate, ATP, and PII, respectively. Structural and biochemical analyses enable us to identify the key residues that form a hydrophobic and a hydrophilic cavity along the substrate translocation channel. The core structure of PII, but not the canonical T-loop, binds to NrtC and stabilizes the CRD, making it visible in the complex structure, narrows the substrate translocation channel in NrtB, and ultimately locks NrtBCD at an inhibited inward-facing conformation. Based on these results and previous reports, we propose a putative transport cycle driven by NrtABCD, which is allosterically inhibited by PII in response to the cellular level of 2-oxoglutarate. Our findings provide a distinct regulatory mechanism of ABC transporter via asymmetrically binding to a signaling protein.


Asunto(s)
Cianobacterias , Transportadores de Nitrato , Nitratos/metabolismo , Proteínas Bacterianas/metabolismo , Regulación Alostérica , Microscopía por Crioelectrón , Cianobacterias/metabolismo , Adenosina Trifosfato/metabolismo , Nitrógeno/metabolismo , Carbono/metabolismo , Proteínas PII Reguladoras del Nitrógeno/genética , Proteínas PII Reguladoras del Nitrógeno/metabolismo
3.
Proc Natl Acad Sci U S A ; 120(4): e2213727120, 2023 01 24.
Artículo en Inglés | MEDLINE | ID: mdl-36656854

RESUMEN

The myophage possesses a contractile tail that penetrates its host cell envelope. Except for investigations on the bacteriophage T4 with a rather complicated structure, the assembly pattern and tail contraction mechanism of myophage remain largely unknown. Here, we present the fine structure of a freshwater Myoviridae cyanophage Pam3, which has an icosahedral capsid of ~680 Å in diameter, connected via a three-section neck to an 840-Å-long contractile tail, ending with a three-module baseplate composed of only six protein components. This simplified baseplate consists of a central hub-spike surrounded by six wedge heterotriplexes, to which twelve tail fibers are covalently attached via disulfide bonds in alternating upward and downward configurations. In vitro reduction assays revealed a putative redox-dependent mechanism of baseplate assembly and tail sheath contraction. These findings establish a minimal myophage that might become a user-friendly chassis phage in synthetic biology.


Asunto(s)
Myoviridae , Ensamble de Virus , Bacteriófago T4/química , Cápside , Proteínas de la Cápside/química , Microscopía por Crioelectrón , Myoviridae/química
4.
Proc Natl Acad Sci U S A ; 119(14): e2118656119, 2022 04 05.
Artículo en Inglés | MEDLINE | ID: mdl-35349344

RESUMEN

SignificanceATP8B1 is a P4 ATPase that maintains membrane asymmetry by transporting phospholipids across the cell membrane. Disturbance of lipid asymmetry will lead to the imbalance of the cell membrane and eventually, cell death. Thus, defects in ATP8B1 are usually associated with severe human diseases, such as intrahepatic cholestasis. The present structures of ATP8B1 complexed with its auxiliary noncatalytic partners CDC50A and CDC50B reveal an autoinhibited state of ATP8B1 that could be released upon substrate binding. Moreover, release of this autoinhibition could be facilitated by the bile acids, which are key factors that alter the membrane asymmetry of hepatocytes. This enabled us to figure out a feedback loop of bile acids and lipids across the cell membrane.


Asunto(s)
Adenosina Trifosfatasas , Colestasis Intrahepática , Adenosina Trifosfatasas/metabolismo , Ácidos y Sales Biliares/metabolismo , Membrana Celular/metabolismo , Colestasis Intrahepática/metabolismo , Humanos , Proteínas de Transferencia de Fosfolípidos/metabolismo , Fosfolípidos/metabolismo
5.
Plant Dis ; 108(6): 1769-1775, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38240655

RESUMEN

Watermelon silver mottle virus (WSMoV), a potentially invasive virus, is known to reduce the yield and degrade the quality of infected crops in Cucurbitaceae and Solanaceae families, resulting in significant economic losses in limited areas of several Asian countries. WSMoV, previously detected on various crops in southern China, has now become more prevalent on watermelon and sweet pepper in the northern cities of China for the first time. A sequencing-based phylogenetic analysis has confirmed that the viral strains infecting cucumber, watermelon, and sweet pepper plants in Shandong Province are most closely related to those isolated from Guangdong, Guangxi, and Taiwan, suggesting a farther and continuous spread of WSMoV throughout China. To develop a fast, accurate, and practical protocol for WSMoV detection, we designed a set of primers from the conserved sequence of the WSMoV nucleocapsid protein (N) gene for a one-step assay based on reverse transcription loop-mediated isothermal amplification (RT-LAMP). The RT-LAMP assay was performed successfully for 50 min at 61°C and exhibited a highly specific result without cross-reactions with other similar viruses and a sensitivity that is 100-fold higher than that of the traditional RT-PCR. The confirmation of 26 WSMoV suspect samples collected from various regions in Shandong through the RT-LAMP testing has demonstrated that the assay is suitable and practical for detection of WSMoV in both laboratory and field settings.


Asunto(s)
Citrullus , Técnicas de Amplificación de Ácido Nucleico , Filogenia , Enfermedades de las Plantas , Enfermedades de las Plantas/virología , Técnicas de Amplificación de Ácido Nucleico/métodos , Citrullus/virología , China , Transcripción Reversa , Tospovirus/genética , Tospovirus/aislamiento & purificación , Tospovirus/clasificación , ARN Viral/genética , Capsicum/virología , Técnicas de Diagnóstico Molecular
6.
J Sci Food Agric ; 103(2): 606-615, 2023 Jan 30.
Artículo en Inglés | MEDLINE | ID: mdl-36054657

RESUMEN

BACKGROUND: Soybeans and defatted soybeans, commonly used as protein ingredients, have different flavors of their fermented soy sauce. Clarifying the differences between the two soy sauces, as well as the formation mechanism, is an important prerequisite for improving the flavor of defatted soybean soy sauce. To this goal, the aroma characteristics of two soy sauces and their volatile profiles were compared by sensory evaluation and gas chromatography-mass spectrometry, and eight enzyme activities and volatile profiles of matured koji were determined. RESULTS: Sensory results showed that the acids, fruity and cooked potato-like attributes were higher in whole soybean fermented soy sauce, whereas defatted soybean soy sauce exhibited higher smoky and malty attributes, closely related to the contents of aroma-active compounds in soy sauce, such as isobutyl acetate, 2/3-methylbutanal, acetic acid and 2/3-methylbutanoic acid. The content of most volatiles in the matured kojis showed a consistent trend with that of soy sauce: alcohols, acids, furan(one)s and ketones. Interestingly, acid protease and cellulase activities were 3.3 and 1.6 times higher in the whole soybean koji than in defatted soybean koji, respectively, whereas neutral protease, aminopeptidase, glucoamylase and ß-glucosidase were approximately 2.0 times higher in defatted soybean koji. CONCLUSION: In summary, the flavor differences between soybean and defatted soybean fermented soy sauce were not only caused by the differences in the content of flavor precursors in the materials, but also closely related to the differences in the enzymatic profiles accumulated during the koji-making process. © 2022 Society of Chemical Industry.


Asunto(s)
Alimentos de Soja , Alimentos de Soja/análisis , Glycine max/metabolismo , Fermentación , Odorantes/análisis , Péptido Hidrolasas/metabolismo
7.
Proteins ; 90(10): 1749-1765, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-35924777

RESUMEN

ATP-binding cassette (ABC) superfamily is one of the largest groups of primary active transporters that could be found in all kingdoms of life from bacteria to humans. In humans, ABC transporters can selectively transport a wide spectrum of substrates across membranes, thus playing a pivotal role in multiple physiological processes. In addition, due to the ability of exporting clinic therapeutics, some ABC transporters were originally termed multidrug resistance proteins. Increasing investigations of human ABC transporters in recent years have provided abundant information for elucidating their structural features, based on the structures at distinct states in a transport cycle. This review focuses on the recent progress in human ABC structural analyses, substrate binding specificities, and translocation mechanisms. We dedicate to summarize the common features of human ABC transporters in different subfamilies, and to discuss the possibility to apply the fast-developing techniques, such as cryogenic electron microscopy, and artificial intelligence-assisted structure prediction, for future studies.


Asunto(s)
Transportadoras de Casetes de Unión a ATP , Plásticos , Subfamilia B de Transportador de Casetes de Unión a ATP , Transportadoras de Casetes de Unión a ATP/química , Adenosina Trifosfato , Inteligencia Artificial , Humanos , Plásticos/metabolismo
8.
Microbiology (Reading) ; 168(4)2022 04.
Artículo en Inglés | MEDLINE | ID: mdl-35467499

RESUMEN

Despite renewed interest, development of chemical biology methods to study peptidoglycan metabolism has lagged in comparison to the glycobiology field in general. To address this, a panel of diamides were screened against the Gram-positive bacterium Streptococcus pneumoniae to identify inhibitors of bacterial growth. The screen identified the diamide masarimycin as a bacteriostatic inhibitor of S. pneumoniae growth with an MIC of 8 µM. The diamide inhibited detergent-induced autolysis in a concentration-dependent manner, indicating perturbation of peptidoglycan degradation as the mode-of-action. Cell based screening of masarimycin against a panel of autolysin mutants, identified a higher MIC against a ΔlytB strain lacking an endo-N-acetylglucosaminidase involved in cell division. Subsequent biochemical and phenotypic analyses suggested that the higher MIC was due to an indirect interaction with LytB. Further analysis of changes to the cell surface in masarimycin treated cells identified the overexpression of several moonlighting proteins, including elongation factor Tu which is implicated in regulating cell shape. Checkerboard assays using masarimycin in concert with additional antibiotics identified an antagonistic relationship with the cell wall targeting antibiotic fosfomycin, which further supports a cell wall mode-of-action.


Asunto(s)
Peptidoglicano , Streptococcus pneumoniae , Antibacterianos/metabolismo , Antibacterianos/farmacología , Pared Celular/metabolismo , Diamida/metabolismo , N-Acetil Muramoil-L-Alanina Amidasa/genética , N-Acetil Muramoil-L-Alanina Amidasa/metabolismo , Peptidoglicano/metabolismo , Streptococcus pneumoniae/metabolismo
9.
Opt Express ; 30(5): 8317-8329, 2022 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-35299575

RESUMEN

Optofluidic microlenses are one of the crucial components in many miniature lab-on-chip systems. However, many optofluidic microlenses are fabricated through complex micromachining and tuned by high-precision actuators. We propose a kind of tunable optofluidic microbubble lens that is made by the fuse-and-blow method with a fiber fusion splicer. The optical focusing properties of the microlens can be tuned by changing the refractive index of the liquid inside. The focal spot size is 2.8 µm and the focal length is 13.7 µm, which are better than those of other tunable optofluidic microlenses. The imaging capability of the optofluidic microbubble lens is demonstrated under a resolution test target and the imaging resolution can reach 1 µm. The results indicate that the optofluidic microbubble lens possesses good focusing properties and imaging capability for many applications, such as cell counting, optical trapping, spatial light coupling, beam shaping and imaging.


Asunto(s)
Lentes , Técnicas Analíticas Microfluídicas , Recuento de Células , Microburbujas , Refractometría
10.
Virol J ; 19(1): 34, 2022 03 01.
Artículo en Inglés | MEDLINE | ID: mdl-35232483

RESUMEN

BACKGROUND: Acute hemorrhagic conjunctivitis (AHC) is classified as a class C notifiable infectious disease in China and poses a great threat to public health. This study aimed to investigate the epidemiological trends and hotspots of AHC in mainland China. Sociodemographic factors that could contribute to early warning of AHC were further explored. METHODS: Yearly and monthly incidences of acute hemorrhagic conjunctivitis by date and region from 2004 to 2018 were extracted from the Data Center of China Public Health Science. Joinpoint regression and spatial autocorrelation analysis were performed to explore the epidemiological trends and hotspots of AHC. A generalized linear model was then applied to explore the relationship between sociodemographic factors and AHC incidence. RESULTS: The average annual AHC incidence was 3.58/100,000 in mainland China. The first-level spatial and temporal aggregation areas were distributed in Guangxi, Hainan, Guangdong, Guizhou, Hunan, Jiangxi, Fujian, Chongqing, Hubei, Anhui, and Zhejiang, with gathering times from 2010/1/1 to 2010/12/31 (RR = 20.13, LLR = 474,522.89, P < 0.01). After 2010, the AHC incidence was stable (APC = - 8.37, 95% CI: - 23.02-9.06). However, it was significantly increased in low- and middle-income provinces (AAPC = 10.65, 95% CI: 0.62-21.68, AAPC = 11.94, 95% CI: 0.62-24.53). The peak of AHC occurred during the August to October period. Children who age 0-3 years are identified as high-risk group with AHC incidence significantly increased (APC = 31.54, 95% CI: 0.27-72.56). Birth rate, population ages 0-14 (% of total population), passenger traffic, and urban population (% of total population) were positively associated with the AHC incidence, while per capita gross domestic product was negatively associated with the AHC incidence. CONCLUSION: Overall, the AHC incidence was stable after 2010 in China, but it was significantly increased in low- and middle-income provinces. Regions with a high birth rate, population ages 0-14 (% of the total population), passenger traffic, urban population (% of the total population) and low per capita gross domestic product are at high risk of incidences of AHC. In the future, public health policy and resource priority for AHC in regions with these characteristics are necessary.


Asunto(s)
Conjuntivitis Hemorrágica Aguda , Adolescente , Niño , Preescolar , China/epidemiología , Conjuntivitis Hemorrágica Aguda/epidemiología , Humanos , Incidencia , Lactante , Recién Nacido , Salud Pública , Factores Sociodemográficos
11.
Hepatol Res ; 52(9): 794-803, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-35698267

RESUMEN

AIM: Tyrosine kinase inhibitors target transarterial chemoembolization (TACE)-mediated vascular endothelial growth factor to inhibit tumor revascularization and to slow tumor progression. The present study aimed to compare the clinical outcomes of TACE combined with lenvatinib (TACE-lenvatinib) and TACE combined with sorafenib (TACE-sorafenib) in patients with unresectable hepatocellular carcinoma (HCC). METHODS: The clinical data of patients diagnosed with unresectable HCC who received TACE-lenvatinib or TACE-sorafenib between January 2018 and April 2021 were retrospectively reviewed. The tumor response, progression-free survival (PFS), overall survival (OS), and adverse events (AEs) were evaluated and compared between the two groups. RESULTS: A total of 112 patients were enrolled and classified into the TACE-lenvatinib group (n = 53) and the TACE-sorafenib group (n = 59). The objective response rates of patients in the TACE-lenvatinib and TACE-sorafenib groups were 54.7% and 44.1%, respectively (p = 0.260), and the disease control rates (DCRs) were 81.1% and 61.0% (p = 0.020). The median PFS time was significantly longer in the TACE-lenvatinib group than in the TACE-sorafenib group (10.7 vs. 6.0 months; p = 0.002). The median OS time between the TACE-lenvatinib and TACE-sorafenib groups also showed a significant difference (30.5 vs. 20.5 months, p = 0.018). All treatment-related AEs and grade 3/4 AEs were comparable between the two groups (p > 0.05). CONCLUSION: Compared to TACE-sorafenib, TACE-lenvatinib was associated with better DCR, PFS and OS outcomes in patients with unresectable HCC. In subgroups of Barcelona Clinic Liver Cancer B stage or TACE-refractory patients, TACE-lenvatinib also showed a trend of superiority.

12.
Environ Res ; 212(Pt C): 113480, 2022 09.
Artículo en Inglés | MEDLINE | ID: mdl-35588771

RESUMEN

Soil respiration, particularly heterotrophic respiration (RH), is a potent source of carbon dioxide (CO2) in the atmosphere. The current research focuses on the evaluation of RH for six land use systems including sloping cropland (SC), shrub land (SD), grassland (GD), shrub & grassland (SGD), newly abandoned cropland (NC) and afforested forest (AF). Heterotrophic respiration showed a diverse seasonal pattern over a year long period that was affected by various soil properties and climatic variables across the six land use systems in a subtropical Karst landscape. The lowest RH scores were found in the SD site (annual cumulative soil CO2 flux: 2447 kg C ha-1), whereas the maximum heterotrophic respiration occurred in the SF site (annual cumulative soil CO2 13597 kg C ha-1). The values of RH were: SC site: 3.8-191.5 mg C m-2 h-1, NC site: 1.04-129 mg C m-2 h-1, GD site: 3.6-100.7 mg C m-2 h-1, SGD site: 0.3-393.5 mg C m-2 h-1, SD site: 3-116 mg C m-2 h-1, and SF site: 10.6-398.2 mg C m-2 h-1. Highly significant (p ≤ 0.01) and positive correlations between RH rate and soil temperature were found for the studied land use types (correlation coefficients as follows; SC: 0.77, NC: 0.61, GD: 0.283, SGD: 0.535, SD: 0.230, SF: 0.85). However, water filled pore space (WFPS), NH4+, NO3-, dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) concentrations showed varied (positive and negative) correlations with RH. The overall results show that soil temperature can be considered as the most limiting factor for RH among all the sites studied in the present research. In these environments, soil heterotrophic respiration significantly correlated with soil temperature, highlighting the significance of climate on heterotrophic respiration.


Asunto(s)
Dióxido de Carbono , Suelo , Dióxido de Carbono/análisis , China , Bosques , Respiración , Temperatura
13.
Can J Infect Dis Med Microbiol ; 2022: 4899824, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35345870

RESUMEN

The Candidate Phyla Radiation (CPR), as a newly discovered and difficult-to-culture bacterium, accounts for the majority of the bacterial domain, which may be related to various oral diseases, including dental caries. Restricted by laboratory culture conditions, there is limited knowledge about oral CPR. Advances in metagenomics provide a new way to study CPR through molecular biology. Here, we used metagenomic assembly and binning to reconstruct more and higher quality metagenome-assembled genomes (MAGs) of CPR from oral dental plaque. These MAGs represent novel CPR species, which differed from all known CPR organisms. Relative abundance of different CPR MAGs in the caries and caries-free group was estimated by mapping metagenomic reads to newly constructed MAGs. The relative abundance of two CPR MAGs was significantly increased in the caries group, indicating that there might be a relationship with caries activity. The detection of a large number of unclassified CPR MAGs in the dataset implies that the phylogenetic diversity of CPR is enormous. The results provide a reference value for exploring the ecological distribution and function of uncultured or difficult-to-culture microorganisms.

14.
Proc Natl Acad Sci U S A ; 115(2): 403-408, 2018 01 09.
Artículo en Inglés | MEDLINE | ID: mdl-29279392

RESUMEN

The coordination of carbon and nitrogen metabolism is essential for bacteria to adapt to nutritional variations in the environment, but the underlying mechanism remains poorly understood. In autotrophic cyanobacteria, high CO2 levels favor the carboxylase activity of ribulose 1,5 bisphosphate carboxylase/oxygenase (RuBisCO) to produce 3-phosphoglycerate, whereas low CO2 levels promote the oxygenase activity of RuBisCO, leading to 2-phosphoglycolate (2-PG) production. Thus, the 2-PG level is reversely correlated with that of 2-oxoglutarate (2-OG), which accumulates under a high carbon/nitrogen ratio and acts as a nitrogen-starvation signal. The LysR-type transcriptional repressor NAD(P)H dehydrogenase regulator (NdhR) controls the expression of genes related to carbon metabolism. Based on genetic and biochemical studies, we report here that 2-PG is an inducer of NdhR, while 2-OG is a corepressor, as found previously. Furthermore, structural analyses indicate that binding of 2-OG at the interface between the two regulatory domains (RD) allows the NdhR tetramer to adopt a repressor conformation, whereas 2-PG binding to an intradomain cleft of each RD triggers drastic conformational changes leading to the dissociation of NdhR from its target DNA. We further confirmed the effect of 2-PG or 2-OG levels on the transcription of the NdhR regulon. Together with previous findings, we propose that NdhR can sense 2-OG from the Krebs cycle and 2-PG from photorespiration, two key metabolites that function together as indicators of intracellular carbon/nitrogen status, thus representing a fine sensor for the coordination of carbon and nitrogen metabolism in cyanobacteria.


Asunto(s)
Carbono/metabolismo , Cianobacterias/metabolismo , Genes Reguladores , NAD(P)H Deshidrogenasa (Quinona)/metabolismo , Nitrógeno/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Dióxido de Carbono/metabolismo , Cianobacterias/genética , Regulación Bacteriana de la Expresión Génica , Glicolatos/metabolismo , Ácidos Cetoglutáricos/metabolismo , NAD(P)H Deshidrogenasa (Quinona)/genética , Ribulosa-Bifosfato Carboxilasa/genética , Ribulosa-Bifosfato Carboxilasa/metabolismo , Transducción de Señal
15.
Proteins ; 88(9): 1226-1232, 2020 09.
Artículo en Inglés | MEDLINE | ID: mdl-32337767

RESUMEN

Cyanophages, widespread in aquatic systems, are a class of viruses that specifically infect cyanobacteria. Though they play important roles in modulating the homeostasis of cyanobacterial populations, little is known about the freshwater cyanophages, especially those hypothetical proteins of unknown function. Mic1 is a freshwater siphocyanophage isolated from the Lake Chaohu. It encodes three hypothetical proteins Gp65, Gp66, and Gp72, which share an identity of 61.6% to 83%. However, we find these three homologous proteins differ from each other in oligomeric state. Moreover, we solve the crystal structure of Gp72 at 2.3 Å, which represents a novel fold in the α + ß class. Structural analyses combined with redox assays enable us to propose a model of disulfide bond mediated oligomerization for Gp72. Altogether, these findings provide structural and biochemical basis for further investigations on the freshwater cyanophage Mic1.


Asunto(s)
Bacteriófagos/química , Cianobacterias/virología , Disulfuros/química , Proteínas Virales/química , Secuencia de Aminoácidos , Bacteriófagos/genética , Bacteriófagos/metabolismo , Sitios de Unión , Clonación Molecular , Cristalografía por Rayos X , Disulfuros/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Agua Dulce/microbiología , Agua Dulce/virología , Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Modelos Moleculares , Oxidación-Reducción , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Pliegue de Proteína , Dominios y Motivos de Interacción de Proteínas , Multimerización de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Proteínas Virales/genética , Proteínas Virales/metabolismo
16.
Biochem Biophys Res Commun ; 524(3): 784-790, 2020 04 09.
Artículo en Inglés | MEDLINE | ID: mdl-32037091

RESUMEN

The accessory sec system consisting of seven conserved components is commonly distributed among pathogenic Gram-positive bacteria for the secretion of serine-rich-repeat proteins (SRRPs). Asp1/2/3 protein complex in the system is responsible for both the O-acetylation of GlcNAc and delivering SRRPs to SecA2. However, the molecular mechanism of how Asp1/2/3 transport SRRPs remains unknown. Here, we report the complex structure of Asp1/2/3 from Streptococcus pneumoniae at 2.9 Å. Further functional assays indicated that Asp1/2/3 can stimulate the ATPase activity of SecA2. In addition, the deletion of asp1/2/3 gene resulted in the accumulation of a secreted version of PsrP with an altered glycoform in protoplast fraction of the mutant cell, which suggested the modification/transport coupling of the substrate. Altogether, these findings not only provide structural basis for further investigations on the transport process of SRRPs, but also uncover the indispensable role of Asp1/2/3 in the accessory sec system.


Asunto(s)
Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Complejos Multiproteicos/química , Complejos Multiproteicos/metabolismo , Secuencias Repetitivas de Aminoácido , Serina/metabolismo , Streptococcus pneumoniae/metabolismo , Secuencia de Aminoácidos , Glicosilación , Transporte de Proteínas , Relación Estructura-Actividad
17.
BMC Microbiol ; 20(1): 110, 2020 05 06.
Artículo en Inglés | MEDLINE | ID: mdl-32375647

RESUMEN

BACKGROUND: Bacterial gas vesicles, composed of two major gas vesicle proteins and filled with gas, are a unique class of intracellular bubble-like nanostructures. They provide buoyancy for cells, and thus play an essential role in the growth and survival of aquatic and soil microbes. Moreover, the gas vesicle could be applied to multimodal and noninvasive biological imaging as a potential nanoscale contrast agent. To date, cylinder-shaped gas vesicles have been found in several strains of cyanobacteria. However, whether the functional gas vesicles could be produced in the model filamentous cyanobacteria Anabaena sp. PCC 7120 remains controversial. RESULTS: In this study, we found that an intact gvp gene cluster indeed exists in the model filamentous cyanobacteria Anabaena sp. PCC 7120. Real-time PCR assays showed that the gvpA gene is constitutively transcribed in vivo, and its expression level is upregulated at low light intensity and/or high growth temperature. Functional expression of this intact gvp gene cluster enables the recombinant Escherichia coli to gain the capability of floatation in the liquid medium, thanks to the assembly of irregular gas vesicles. Furthermore, crystal structure of GvpF in combination with enzymatic activity assays of GvpN suggested that these two auxiliary proteins of gas vesicle are structurally and enzymatically conserved, respectively. CONCLUSIONS: Our findings show that the laboratory strain of model filamentous cyanobacteria Anabaena sp. PCC 7120 possesses an intact but partially degenerated gas vesicle gene cluster, indicating that the natural isolate might be able to produce gas vesicles under some given environmental stimuli for better floatation.


Asunto(s)
Anabaena/enzimología , Proteínas/genética , Proteínas/metabolismo , Análisis de Secuencia de ADN/métodos , Anabaena/genética , Cristalografía por Rayos X , Medios de Cultivo/química , Escherichia coli/enzimología , Escherichia coli/genética , Escherichia coli/crecimiento & desarrollo , Regulación Bacteriana de la Expresión Génica , Modelos Moleculares , Familia de Multigenes , Conformación Proteica , Proteínas/química
18.
Biochem J ; 476(10): 1433-1444, 2019 05 21.
Artículo en Inglés | MEDLINE | ID: mdl-31036719

RESUMEN

The tubulin-like GTPase protein FtsZ, which forms a discontinuous cytokinetic ring at mid-cell, is a central player to recruit the division machinery to orchestrate cell division. To guarantee the production of two identical daughter cells, the assembly of FtsZ, namely Z-ring, and its precise positioning should be finely regulated. In Streptococcus pneumoniae, the positioning of Z-ring at the division site is mediated by a bitopic membrane protein MapZ (mid-cell-anchored protein Z) through direct interactions between the intracellular domain (termed MapZ-N (the intracellular domain of MapZ)) and FtsZ. Using nuclear magnetic resonance titration experiments, we clearly assigned the key residues involved in the interactions. In the presence of MapZ-N, FtsZ gains a shortened activation delay, a lower critical concentration for polymerization and a higher cooperativity towards GTP hydrolysis. On the other hand, MapZ-N antagonizes the lateral interactions of single-stranded filaments of FtsZ, thus slows down the formation of highly bundled FtsZ polymers and eventually maintains FtsZ at a dynamic state. Altogether, we conclude that MapZ is not only an accelerator to trigger the polymerization of FtsZ, but also a brake to tune the velocity to form the end-product, FtsZ bundles. These findings suggest that MapZ is a multi-functional regulator towards FtsZ that controls both the precise positioning and proper timing of FtsZ polymerization.


Asunto(s)
Proteínas Bacterianas , Proteínas del Citoesqueleto , Guanosina Trifosfato , Multimerización de Proteína , Streptococcus pneumoniae , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Proteínas del Citoesqueleto/química , Proteínas del Citoesqueleto/metabolismo , Guanosina Trifosfato/química , Guanosina Trifosfato/metabolismo , Hidrólisis , Dominios Proteicos , Streptococcus pneumoniae/química , Streptococcus pneumoniae/metabolismo
19.
Sensors (Basel) ; 20(10)2020 May 25.
Artículo en Inglés | MEDLINE | ID: mdl-32466269

RESUMEN

Fiber gas sensing techniques have been applied for a wide range of industrial applications. In this paper, the basic fiber gas sensing principles and the development of different fibers have been introduced. In various specialty fibers, hollow-core photonic crystal fibers (HC-PCFs) can overcome the fundamental limits of solid fibers and have attracted intense interest recently. Here, we focus on the review of HC-PCF gas sensing, including the light-guiding mechanisms of HC-PCFs, various sensing configurations, microfabrication approaches, and recent research advances including the mid-infrared gas sensors via hollow core anti-resonant fibers. This review gives a detailed and deep understanding of HC-PCF gas sensors and will promote more practical applications of HC-PCFs in the near future.

20.
Biochem Biophys Res Commun ; 514(4): 1192-1197, 2019 07 05.
Artículo en Inglés | MEDLINE | ID: mdl-31104766

RESUMEN

The choline-binding proteins play essential roles in pneumococcal colonization and virulence. It has been suggested that the choline-binding protein J (termed CbpJ; encoded by the gene sp_0378) from Streptococcus pneumoniae TIGR4 involves in the colonization in host and contributes to evasion of neutrophil killing. Here we report the 2.0 Šcrystal structure of CbpJ in complex with choline. CbpJ consists of an N-terminal putative functional domain (N-domain) followed by a C-terminal choline-binding domain (CBD). The N-domain harbors four degenerated choline-binding repeats (CBRs) that lose the capacity of binding to choline, whereas the CBD is composed of seven typical CBRs. Further functional assays showed that the CBD contributes to the pneumococcal adhesion to human lung epithelial cell A549. These findings provide insights into the pneumococcal pathogenesis and broaden our understanding on the functions of choline-binding proteins.


Asunto(s)
Adhesinas Bacterianas/química , Streptococcus pneumoniae/química , Células A549 , Adhesión Bacteriana , Adhesión Celular , Colina/química , Colina/metabolismo , Cristalografía por Rayos X , Humanos , Modelos Moleculares , Streptococcus pneumoniae/metabolismo
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