Single-cell RNA sequencing analysis to evaluate antimony exposure effects on cell-lineage communications within the Drosophila testicular niche.

The increasing production and prevalence of antimony (Sb)-related products raise concerns regarding its potential hazards to reproductive health. Upon environmental exposure, Sb reportedly induces testicular toxicity during spermatogenesis; moreover, it is known to affect various testicular cell populations, particularly germline stem cell populations. However, the cell-cell communication resulting from Sb exposure within the testicular niche remains poorly understood. To address this gap, herein we analyzed testicular single-cell RNA sequencing data from Sb-exposed Drosophila. Our findings revealed that the epidermal growth factor receptor (EGFR) and WNT signaling pathways were associated with the stem cell niche in Drosophila testes, which may disrupt the homeostasis of the testicular niche in Drosophila. Furthermore, we identified several ligand-receptor pairs, facilitating the elucidation of intercellular crosstalk involved in Sb-mediated reproductive toxicology. We employed scRNA-seq analysis and conducted functional verification to investigate the expression patterns of core downstream factors associated with EGFR and WNT signatures in the testes under the influence of Sb exposure. Altogether, our results shed light on the potential mechanisms of Sb exposure-mediated testicular cell-lineage communications.

Intelligent water perimeter security event recognition based on NAM-MAE and distributed optic fiber acoustic sensing system.

Distributed optical acoustic sensing (DAS) based on phase-sensitive optical time-domain reflectometry can realize the distributed monitoring of multi-point disturbances along an optical fiber, thus making it suitable for water perimeter security applications. However, owing to the complex environment and the production of various noises by the system, continuous and effective recognition of disturbance signals becomes difficult. In this study, we propose a Noise Adaptive Mask-Masked Autoencoders (NAM-MAE) algorithm based on the novel mask mode of a Masked Autoencoders (MAE) and applies it to the intelligent event recognition in DAS. In this method, fewer but more accurate features are fed into the deep learning model for recognition by directly shielding the noise. Taking the fading noise generated by the system as an example, data on water perimeter security events collected in DAS underwater acoustic experiments are used. The NAM-MAE is compared with other models. The results indicate higher training accuracy and higher convergence speed of NAM-MAE than other models. Further, the final test accuracy reaches 96.6134%. It can be demonstrated that the proposed method has feasibility and superiority.

Weak-value amplified surface plasmon resonance sensor based on joint detection of optical activity and refractive index.

A versatile system combining surface plasmon resonance (SPR) and weak value amplification (WVA) is presented, which can measure the optical activity and refractive index of chiral/achiral molecules, ionic compounds, and their mixture in solution individually or simultaneously. The variations in output light intensity directly exhibit high sensitivity to changes in optical activity and refractive index of the aforementioned substances. Furthermore, by examining the correlation between the intensity variation trend and the optical activity of the chiral molecule, the molecule's absolute configuration can be ascertained. Utilizing this instrument, optical rotation with a resolution of 3.04 × 10-6 rad and refractive index with a resolution of 5.57 × 10-9 RIU were obtained. As an attempt at practical application, this sensor was used to detect the adulteration of glucose and fructose in pure honey. Not only can such compromised honey be distinguished from pure honey using the refractive index or optical rotation, but the difference in optical activity can also be employed to effectively differentiate between adulterated honey samples containing glucose and fructose separately.

Organelle Imaging with Terahertz Scattering-Type Scanning Near-Field Microscope.

Organelles play core roles in living beings, especially in internal cellular actions, but the hidden information inside the cell is difficult to extract in a label-free manner. In recent years, terahertz (THz) imaging has attracted much attention because of its penetration depth in nonpolar and non-metallic materials and label-free, non-invasive and non-ionizing ability to obtain the interior information of bio-samples. However, the low spatial resolution of traditional far-field THz imaging systems and the weak dielectric contrast of biological samples hinder the application of this technology in the biological field. In this paper, we used an advanced THz scattering near-field imaging method for detecting chloroplasts on gold substrate with nano-flatness combined with an image processing method to remove the background noise and successfully obtained the subcellular-grade internal reticular structure from an Arabidopsis chloroplast THz image. In contrast, little inner information could be observed in the tea chloroplast in similar THz images. Further, transmission electron microscopy (TEM) and mass spectroscopy (MS) were also used to detect structural and chemical differences inside the chloroplasts of Arabidopsis and tea plants. The preliminary results suggested that the interspecific different THz information is related to the internal spatial structures of chloroplasts and metabolite differences among species. Therefore, this method could open a new way to study the structure of individual organelles.

Walk-through millimeter wave imaging testbed based on double multistatic cross arrays.

A walk-through millimeter wave imaging testbed using double multistatic cross arrays is presented. The imaging testbed consists of a vector network analyzer, a power amplifier, a low-noise amplifier, 36 SP6T electrical switchers, and double homemade multistatic cross arrays placed on both sides of the imaging area. The imaging algorithm based on the range migration algorithm is deduced, and the imaging performance is analyzed. The metallic ball experimental results show that the imaging resolution is close to the theoretical value, and demonstrate the imaging feasibility of the testbed working in mutual mode.

Impaired frontal-parietal control network in chronic prostatitis/chronic pelvic pain syndrome revealed by graph theoretical analysis: A DTI study.

Chronic prostatitis/chronic pelvic pain syndrome (CP/CPPS) is characterized by chronic pain in pelvic area and lower urinary tract symptoms (LUTS). Previous neuroimaging studies demonstrated that chronic pain was associated with the altered brain activity. However, the pathological mechanisms associated with altered brain control of CP/CPPS are not well-understood. Therefore, we sought to investigate the topological properties of white matter brain networks in patients with CP/CPPS and whether the topological configuration of frontal-parietal control network was disrupted. We collected 19 patients with CP/CPPS and 32 matched healthy controls (HCs). Diffusion tensor imaging data of all participates were used to map the white matter structural networks. Graph theoretical method was applied to investigate the alterations of topological properties of brain network in patients. Moreover, we also investigated whether the alerted brain regions might be correlated with any clinical features of patients by the method of Pearson correlation analysis. Both CP/CPPS patients and HCs exhibited a 'small-world' behavior or economical small-world architecture of the white matter brain networks. In addition, CP/CPPS had a lower global efficiency in the right middle frontal gyrus (orbital part) and a higher global efficiency in the left middle cingulate and paracingulate gyri. CP/CPPS also showed increased local efficiency in the left middle cingulate and paracingulate gyri and paracentral lobule. Moreover, the local efficiency of the left middle cingulate gyrus was positively correlated with the scores of the influence of symptoms on the quality of life. The local efficiency of the left precuneus and right supplementary motor area were positively correlated with the total scores of NIH-CPSI and the scores of pain and discomfort symptoms, respectively. Together, we found that patients with CP/CPPS had alterations of connections within the frontal-parietal control network, which suggested that the altered connectivity involved in the executive control processing procedures might contribute to the pathogenesis of the pelvic pain and LUTS in CP/CPPS. Thus these results provided new insights into the understanding of CP/CPPS.

Near-Field Nanoscopic Terahertz Imaging of Single Proteins.

Terahertz (THz) biological imaging has attracted intense attention due to its capability of acquiring physicochemical information in a label-free, noninvasive, and nonionizing manner. However, extending THz imaging to the single-molecule level remains a challenge, partly due to the weak THz reflectivity of biomolecules with low dielectric constants. Here, the development of graphene-mediated THz scattering-type scanning near-field optical microscope for direct imaging of single proteins is reported. Importantly, it is found that a graphene substrate with high THz reflectivity and atomic flatness can provide high THz contrast against the protein molecules. In addition, a platinum probe with an optimized shaft length is found enabling the enhancement of the amplitude of the scattered THz near-field signals. By coupling these effects, the topographical and THz scattering images of individual immunoglobulin G (IgG) and ferritin molecules with the size of a few nanometers are obtained, simultaneously. The demonstrated strategy thus opens new routes to imaging single biomolecules with THz.

Aperture-type terahertz near-field imaging with a cylindrical frustum-shaped plastic probe.

We designed an aluminum-coated plastic probe made from the combination of cylinder and a frustum of a cone for terahertz near-field imaging. The bunching width of the probe is 12 µm and the electric field intensity enhancement factor just outside the probe tip reaches up to 25. An imaging resolution obtained through near-field imaging experiments on a variety of targets, including narrow metals and narrow media, is 6 µm (λ/450) at 0.11 THz. By adopting an adaptive threshold segmentation image processing algorithm that combines Hilbert scanning and wavelet transform, the influence of a large area of metal near the imaging area on the imaging result is successfully suppressed. Imaging of a scratch on the plastic substrate makes the new probe feasible for quality identification of nonmetallic cultural relics.

Fiber optic interferometric seismometer with phase feedback control.

A high-sensitivity ultralow-frequency fiber optic interferometric seismometer using phase feedback control is proposed and demonstrated. The principle of sensitivity improvement using feedback is described, and the characteristics of the seismometer, including the ultralow-frequency vibration sensing with Michelson interferometer with and without feedback control, are analyzed in terms of the amplitude response and phase response. The phase feedback control loop is designed and implemented, and higher sensitivity for very low frequency vibration is achieved. The efficacy of the new approach is demonstrated experimentally, showing that the weak vibration signal originally buried in noise can be observed unambiguously.

Low-frequency fiber optic hydrophone based on weak value amplification.

A high-sensitivity low-frequency fiber optic hydrophone based on weak value amplification (WVA) is proposed and demonstrated. A polarization maintaining (PM) fiber with a length of 0.8 m wound around a polycarbonate (PC) tube is used as the sensing element. Theoretical analysis shows that the PM fiber in a WVA measurement scheme responds to underwater acoustic pressure with unprecedented sensitivity. The prototypical hydrophone based on such a scheme can sense underwater acoustic disturbance as weak as 1.3×10-6 Pa/Hz1/2 at 10 Hz, with a flat frequency response in the low-frequency band of 0.1-50 Hz. The experimental result agrees well with the theoretical prediction to within 0.5 dB.

Terahertz Spectroscopic Signatures of Microcystin Aptamer Solution Probed with a Microfluidic Chip.

Terahertz signature detection of biological samples in aqueous solution remains a great challenge due to the strong terahertz absorption of water. Here we propose a new preparation process for fabricating a microfluidic chip and use it as an effective sensor to probe the terahertz absorption signatures of microcystin aptamer (a linear single-stranded DNA with 60 nucleotides) dissolved in TE buffer with different concentrations. The microfluidic chip made of silicon includes thousands of 2.4 µm × 2.4 µm square-cross-section channels. One repeatable terahertz absorption signature is detected and recognized around 830 GHz, fitted to a Lorentz oscillator. This signature is theorized to originate from the bending of hydrogen bonds formed between adjacent hydrated DNA bases surrounded by water molecules. Furthermore, the low-lying vibrational modes are also investigated by molecular dynamics simulations which suggest that strong resonant oscillations are highly probable in the 815⁻830 GHz frequency band.

Accurate determination of dielectric permittivity of polymers from 75 GHz to 1.6 THz using both S-parameters and transmission spectroscopy: publisher's note.

This publisher's note corrects a reference in Appl. Opt.56, 3287 (2017)APOPAI0003-693510.1364/AO.56.003287.

A competitive colorimetric chloramphenicol assay based on the non-cross-linking deaggregation of gold nanoparticles coated with a polyadenine-modified aptamer.

A competitive colorimetric assay has been established to detect chloramphenicol (CAP). It is based on the use of colloidal and electrostatically stabilized aptamer-modified gold nanoparticles (GNPs). The CAP aptamer is modified by a sequence of 5 adenosine groups to anchor it on the surface of GNPs. It can competitively capture two compounds, viz. D-(-)-threo-2-amino-1-(4-nitrophenyl)-1,3-propanediol (CAP-base, with a positive charge) and CAP (which is uncharged). The capture of the positively charged CAP-base triggers the aggregation of modified GNPs in salt-containing solution, and this causes a color change from red to purple. However, in the presence of CAP and CAP-base, the capture of the uncharged CAP weakens this color change by a competing process for capture. Thus, the concentration of CAP is associated with the degree of deaggregation of GNPs and can be quantified by the ratio of absorbances at 620 nm and 520 nm. The assay has a 22 nM limit of detection in acidic solution, and the response is linear in the range of 0.20 to 3.20 µM CAP concentration. This assay was successfully applied to the determination of CAP in spiked environmental water samples. Conceivably, this method has a wide scope in that it may be applied to a wide range of analytes if respective aptamers are available. Graphical abstract Schematic presentation of a competitive non-cross linking deaggregating method for detecting chloramphenicol. The surface charge of polyA-Apt@GNPs and its aggregation degree (purple) are determined by the charge of target. (CAP-base: precursor of CAP; PolyA-Apt@GNPs: 5'-polyA-modified DNA aptamer functionalized gold nanoparticles.).

Noise Analysis of Monolayer Graphene Nanopores.

Graphene-based nanopore devices have shown tantalizing potential in single molecule detection for their monoatomic membrane thickness which is roughly equal to the gap between nucleobases. However, high noise level hampers applications of graphene nanopore sensors, especially at low frequencies. In this article, we report on a study of the contribution of suspended graphene area to noise level in full frequency band. Monolayer graphene films are transferred onto SiNx substrates preset with holes in varied diameters and formed self-supported films. After that, the films are perforated with smaller, nanoscale holes. Experimental studies indicate a dependency of low-frequency 1/f noise on the underlying SiNx geometry. The contribution of the suspended graphene area to capacitance which affects the noise level in the high frequency range reveals that the graphene free-standing film area influences noise level over a wide frequency region. In addition, the low-frequency noise demonstrates a weak dependency on salt concentration, in deviation from Hooge's relation. These findings and attendant analysis provide a systematic understanding of the noise characteristics and can serve as a guide to designing free-standing monolayer graphene nanopore devices.

Accurate determination of dielectric permittivity of polymers from 75 GHz to 1.6 THz using both S-parameters and transmission spectroscopy.

Interactions of terahertz (THz) electromagnetic radiation with polymer materials have been studied recently with increasing depth and breadth, for purposes of both using polymers in fabricating THz optical components such as lenses, waveplates, waveguides, and sample holders/containers, and employing THz spectral imaging as a new tool for nondestructive testing of polymer composite structures. Either endeavor cannot even begin without a quantitative knowledge of the complex dielectric permittivity, i.e., the propagation and attenuation properties of such polymers in the requisite wave band. In this paper, a number of non-polar and non-magnetic polymers, such as polytetrafluoroethylene, polypropylene, high-density polyethylene, and polymethyl methacrylate, are studied for the purpose of determining their complex dielectric permittivity, including its real part and imaginary parts, in the wide frequency band from millimeter wave to THz wave (75 GHz-1.6 THz), in two ways. The first is a free space method based on a vector network analyzer covering the frequency region from 75 to 500 GHz, and the second is the THz time-domain spectroscopy (THz-TDS), effective for the region of 100 GHz-1.6 THz. The results are consistent with existing data (with discrepancies less than 1% in most cases for both the index of refraction and the absorption coefficient), and where they overlap in frequency coverage, the two methods yield identical results to within measurement error.

Phase-sensitive optical time-domain reflectometric system based on a single-source dual heterodyne detection scheme.

A phase-sensitive optical time-domain reflectometric (ϕ-OTDR) system based on a novel single-source dual heterodyne detection scheme is proposed and demonstrated. It uses the optical beat-frequency signals as the local oscillator signal containing the modulated frequency, frequency drift and phase fluctuation, while the signal to be detected contains all the forgoing spectral components, in addition to the vibration signal under measurement. Frequency mixing serves to isolate the pure vibration signal from the omnipresent residual frequency and phase fluctuations caused by a less strictly synchronous clock, inherent characteristics of the laser and the acousto-optical modulator, and environment temperature changes. With a reduced burden on data processing, better real-time performance is achieved as well. Using probe light pulses of 4 kHz repetition rate and 80 ns pulse width, a 9 m spatial resolution has been achieved on a 24.6 km sensing fiber, with a detectable frequency range from 5 Hz to 1.715 kHz, with a signal-to-noise ratio greater than 23.5 dB. All the above parameters are close to the maximum theoretical values. The drastically improved system demodulation characteristics foreshadow better performance and improved reliability in engineering applications.

Dimension-Factorized Range Migration Algorithm for Regularly Distributed Array Imaging.

The two-dimensional planar MIMO array is a popular approach for millimeter wave imaging applications. As a promising practical alternative, sparse MIMO arrays have been devised to reduce the number of antenna elements and transmitting/receiving channels with predictable and acceptable loss in image quality. In this paper, a high precision three-dimensional imaging algorithm is proposed for MIMO arrays of the regularly distributed type, especially the sparse varieties. Termed the Dimension-Factorized Range Migration Algorithm, the new imaging approach factorizes the conventional MIMO Range Migration Algorithm into multiple operations across the sparse dimensions. The thinner the sparse dimensions of the array, the more efficient the new algorithm will be. Advantages of the proposed approach are demonstrated by comparison with the conventional MIMO Range Migration Algorithm and its non-uniform fast Fourier transform based variant in terms of all the important characteristics of the approaches, especially the anti-noise capability. The computation cost is analyzed as well to evaluate the efficiency quantitatively.

Noncontact detection of Teflon inclusions in glass-fiber-reinforced polymer composites using terahertz imaging.

We employed terahertz (THz) time-domain spectroscopy (TDS) imaging technology, a new nondestructive testing method, to detect the inclusions of glass-fiber-reinforced polymer (GFRP) composites. The refractive index and absorption coefficient of two types of GFRP composites (epoxy GFRP composites and polyester GFRP composites) were first extracted, and GFRP composites with Teflon inclusions were examined, including an epoxy GFRP solid panel with a smaller Teflon inclusion hidden behind a larger Teflon inclusion, and polyester GFRP solid panels with Teflon inclusions of various sizes, at different depths. It was experimentally demonstrated that THz TDS imaging technology could clearly detect a smaller inclusion hidden behind a larger inclusion. When the reflected THz pulse from the inclusion did not overlap with that from the front surface of the sample, removal of the latter before Fourier transform was shown to be helpful in imaging the inclusions. With sufficiently strong incident THz radiation, inclusion insertion depth had little impact on the ability of the THz wave to detect inclusions. However, as the thickness of the inclusion became thinner, the inclusion detection ability of the THz wave deteriorated. In addition, with a combination of reflected C-scan imaging and B-scan imaging using the reflected time-domain waveform, both the lateral sizes and locations of the inclusions and the depths and thicknesses of the inclusions were clearly ascertained.

A High Precision Terahertz Wave Image Reconstruction Algorithm.

With the development of terahertz (THz) technology, the applications of this spectrum have become increasingly wide-ranging, in areas such as non-destructive testing, security applications and medical scanning, in which one of the most important methods is imaging. Unlike remote sensing applications, THz imaging features sources of array elements that are almost always supposed to be spherical wave radiators, including single antennae. As such, well-developed methodologies such as Range-Doppler Algorithm (RDA) are not directly applicable in such near-range situations. The Back Projection Algorithm (BPA) can provide products of high precision at the the cost of a high computational burden, while the Range Migration Algorithm (RMA) sacrifices the quality of images for efficiency. The Phase-shift Migration Algorithm (PMA) is a good alternative, the features of which combine both of the classical algorithms mentioned above. In this research, it is used for mechanical scanning, and is extended to array imaging for the first time. In addition, the performances of PMA are studied in detail in contrast to BPA and RMA. It is demonstrated in our simulations and experiments described herein that the algorithm can reconstruct images with high precision.

A Fiber-Optic Interferometric Tri-Component Geophone for Ocean Floor Seismic Monitoring.

For the implementation of an all fiber observation network for submarine seismic monitoring, a tri-component geophone based on Michelson interferometry is proposed and tested. A compliant cylinder-based sensor head is analyzed with finite element method and tested. The operation frequency ranges from 2 Hz to 150 Hz for acceleration detection, employing a phase generated carrier demodulation scheme, with a responsivity above 50 dB re rad/g for the whole frequency range. The transverse suppression ratio is about 30 dB. The system noise at low frequency originated mainly from the 1/f fluctuation, with an average system noise level -123.55 dB re rad / Hz ranging from 0 Hz to 500 Hz. The minimum detectable acceleration is about 2 ng / Hz , and the dynamic range is above 116 dB.