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1.
Proc Natl Acad Sci U S A ; 120(7): e2217831120, 2023 02 14.
Artículo en Inglés | MEDLINE | ID: mdl-36745799

RESUMEN

Myopathy is the main adverse effect of the widely prescribed statin drug class. Statins exert their beneficial effect by inhibiting HMG CoA-reductase, the rate-controlling enzyme of the mevalonate pathway. The mechanism of statin myopathy is yet to be resolved, and its treatment is insufficient. Through homozygosity mapping and whole exome sequencing, followed by functional analysis using confocal microscopy and biochemical and biophysical methods, we demonstrate that a distinct form of human limb girdle muscular disease is caused by a pathogenic homozygous loss-of-function missense mutation in HMG CoA reductase (HMGCR), encoding HMG CoA-reductase. We biochemically synthesized and purified mevalonolactone, never administered to human patients before, and establish the safety of its oral administration in mice. We then show that its oral administration is effective in treating a human patient with no significant adverse effects. Furthermore, we demonstrate that oral mevalonolactone resolved statin-induced myopathy in mice. We conclude that HMGCR mutation causes a late-onset severe progressive muscular disease, which shows similar features to statin-induced myopathy. Our findings indicate that mevalonolactone is effective both in the treatment of hereditary HMGCR myopathy and in a murine model of statin myopathy. Further large clinical trials are in place to enable the clinical use of mevalonolactone both in the rare orphan disease and in the more common statin myopathy.


Asunto(s)
Inhibidores de Hidroximetilglutaril-CoA Reductasas , Enfermedades Musculares , Animales , Humanos , Ratones , Autoanticuerpos/genética , Hidroximetilglutaril-CoA Reductasas/genética , Hidroximetilglutaril-CoA Reductasas/metabolismo , Inhibidores de Hidroximetilglutaril-CoA Reductasas/efectos adversos , Ácido Mevalónico , Enfermedades Musculares/inducido químicamente , Enfermedades Musculares/tratamiento farmacológico , Enfermedades Musculares/genética , Mutación
2.
Cell Mol Life Sci ; 78(16): 6051-6068, 2021 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-34274977

RESUMEN

Two modes of motility have been reported for bi-directional kinesin-5 motors: (a) context-dependent directionality reversal, a mode in which motors undergo persistent minus-end directed motility at the single-molecule level and switch to plus-end directed motility in different assays or under different conditions, such as during MT gliding or antiparallel sliding or as a function of motor clustering; and (b) bi-directional motility, defined as movement in two directions in the same assay, without persistent unidirectional motility. Here, we examine how modulation of motor-microtubule (MT) interactions affects these two modes of motility for the bi-directional kinesin-5, Cin8. We report that the large insert in loop 8 (L8) within the motor domain of Cin8 increases the MT affinity of Cin8 in vivo and in vitro and is required for Cin8 intracellular functions. We consistently found that recombinant purified L8 directly binds MTs and L8 induces single Cin8 motors to behave according to context-dependent directionality reversal and bi-directional motility modes at intermediate ionic strength and according to a bi-directional motility mode in an MT surface-gliding assay under low motor density conditions. We propose that the largely unstructured L8 facilitates flexible anchoring of Cin8 to the MTs. This flexible anchoring enables the direct observation of bi-directional motility in motility assays. Remarkably, although L8-deleted Cin8 variants exhibit a strong minus-end directed bias at the single-molecule level, they also exhibit plus-end directed motility in an MT-gliding assay. Thus, L8-induced flexible MT anchoring is required for bi-directional motility of single Cin8 molecules but is not necessary for context-dependent directionality reversal of Cin8 in an MT-gliding assay.


Asunto(s)
Cinesinas/metabolismo , Microtúbulos/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Secuencia de Aminoácidos , Movimiento/fisiología , Saccharomyces cerevisiae/metabolismo
3.
Nucleic Acids Res ; 47(16): 8860-8873, 2019 09 19.
Artículo en Inglés | MEDLINE | ID: mdl-31310308

RESUMEN

Interactions between proteins and DNA are crucial for all biological systems. Many studies have shown the dependence of protein-DNA interactions on the surrounding salt concentration. How these interactions are maintained in the hypersaline environments that halophiles inhabit remains puzzling. Towards solving this enigma, we identified the DNA motif recognized by the Halobactrium salinarum ROS-dependent transcription factor (hsRosR), determined the structure of several hsRosR-DNA complexes and investigated the DNA-binding process under extreme high-salt conditions. The picture that emerges from this work contributes to our understanding of the principles underlying the interplay between electrostatic interactions and salt-mediated protein-DNA interactions in an ionic environment characterized by molar salt concentrations.


Asunto(s)
Proteínas Arqueales/química , ADN de Archaea/química , Halobacterium salinarum/genética , Cloruro de Potasio/química , Tolerancia a la Sal/genética , Factores de Transcripción/química , Proteínas Arqueales/genética , Proteínas Arqueales/metabolismo , Secuencia de Bases , Sitios de Unión , Clonación Molecular , Cristalografía por Rayos X , ADN de Archaea/genética , ADN de Archaea/metabolismo , Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Halobacterium salinarum/metabolismo , Haloferax/genética , Haloferax/metabolismo , Cinética , Modelos Moleculares , Conformación de Ácido Nucleico , Cloruro de Potasio/metabolismo , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Dominios y Motivos de Interacción de Proteínas , Especies Reactivas de Oxígeno/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Estrés Fisiológico , Termodinámica , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
4.
J Am Chem Soc ; 142(46): 19551-19557, 2020 11 18.
Artículo en Inglés | MEDLINE | ID: mdl-33166133

RESUMEN

Biomineralization is mediated by specialized proteins that guide and control mineral sedimentation. In many cases, the active regions of these biomineralization proteins are intrinsically disordered. High-resolution structures of these proteins while they interact with minerals are essential for understanding biomineralization processes and the function of intrinsically disordered proteins (IDPs). Here we used the cavity of ferritin as a nanoreactor where the interaction between M6A, an intrinsically disordered iron-binding domain, and an iron oxide particle was visualized at high resolution by cryo-EM. Taking advantage of the differences in the electron-dose sensitivity of the protein and the iron oxide particles, we developed a method to determine the irregular shape of the particles found in our density maps. We found that the folding of M6A correlates with the detection of mineral particles in its vicinity. M6A interacts with the iron oxide particles through its C-terminal side, resulting in the stabilization of a helix at its N-terminal side. The stabilization of the helix at a region that is not in direct contact with the iron oxide particle demonstrates the ability of IDPs to respond to signals from their surroundings by conformational changes. These findings provide the first glimpse toward the long-suspected mechanism for biomineralization protein control over mineral microstructure, where unstructured regions of these proteins become more ordered in response to their interaction with the nascent mineral particles.


Asunto(s)
Apoferritinas/química , Proteínas Bacterianas/química , Microscopía por Crioelectrón/métodos , Compuestos Férricos/química , Proteínas Intrínsecamente Desordenadas/química , Péptidos/química , Sitios de Unión , Biomineralización , Nanopartículas Magnéticas de Óxido de Hierro/química , Magnetospirillum/química , Modelos Moleculares , Tamaño de la Partícula , Unión Proteica , Conformación Proteica , Pliegue de Proteína
5.
Mol Microbiol ; 107(4): 542-557, 2018 02.
Artículo en Inglés | MEDLINE | ID: mdl-29243866

RESUMEN

Magnetospirillum gryphiswaldense MSR-1 synthesizes membrane-enclosed magnetite (Fe3 O4 ) nanoparticles, magnetosomes, for magnetotaxis. Formation of these organelles involves a complex process comprising key steps which are governed by specific magnetosome-associated proteins. MamB, a cation diffusion facilitator (CDF) family member has been implicated in magnetosome-directed iron transport. However, deletion mutagenesis studies revealed that MamB is essential for the formation of magnetosome membrane vesicles, but its precise role remains elusive. In this study, we employed a multi-disciplinary approach to define the role of MamB during magnetosome formation. Using site-directed mutagenesis complemented by structural analyses, fluorescence microscopy and cryo-electron tomography, we show that MamB is most likely an active magnetosome-directed transporter serving two distinct, yet essential functions. First, MamB initiates magnetosome vesicle formation in a transport-independent process, probably by serving as a landmark protein. Second, MamB transport activity is required for magnetite nucleation. Furthermore, by determining the crystal structure of the MamB cytosolic C-terminal domain, we also provide mechanistic insight into transport regulation. Additionally, we present evidence that magnetosome vesicle growth and chain formation are independent of magnetite nucleation and magnetic interactions respectively. Together, our data provide novel insight into the role of the key bifunctional magnetosome protein MamB, and the early steps of magnetosome formation.


Asunto(s)
Proteínas Bacterianas/metabolismo , Biomineralización , Óxido Ferrosoférrico/metabolismo , Magnetosomas/metabolismo , Magnetospirillum/enzimología , Alelos , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Dispersión Dinámica de Luz , Óxido Ferrosoférrico/química , Magnetosomas/química , Magnetospirillum/genética , Mutagénesis Sitio-Dirigida , Dominios Proteicos , Difracción de Rayos X
6.
J Struct Biol ; 204(2): 191-198, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-30110657

RESUMEN

Protein-DNA interactions are highly dependent on salt concentration. To gain insight into how such interactions are maintained in the highly saline cytoplasm of halophilic archaea, we determined the 3-D structure of VNG0258H/RosR, the first haloarchaeal DNA-binding protein from the extreme halophilic archaeon Halobactrium salinarum. It is a dimeric winged-helix-turn-helix (wHTH) protein with unique features due to adaptation to the halophilic environment. As ions are major players in DNA binding processes, particularly in halophilic environments, we investigated the solution structure of the ionic envelope and located anions in the first shell around the protein in the crystal using anomalous scattering. Anions that were found to be tightly bound to residues in the positively charged DNA-binding site would probably be released upon DNA binding and will thus make significant contribution to the driving force of the binding process. Unexpectedly, ions were also found in a buried internal cavity connected to the external medium by a tunnel. Our structure lays a solid groundwork for future structural, computational and biochemical studies on complexes of the protein with cognate DNA sequences, with implications to protein-DNA interactions in hyper-saline environments.


Asunto(s)
Proteínas Arqueales/química , Proteínas Arqueales/metabolismo , Proteínas de Unión al ADN/química , Proteínas de Unión al ADN/metabolismo , Secuencia de Aminoácidos , Cristalografía por Rayos X , Halobacterium salinarum , Datos de Secuencia Molecular , Estructura Secundaria de Proteína
7.
J Struct Biol ; 194(3): 244-52, 2016 06.
Artículo en Inglés | MEDLINE | ID: mdl-26970040

RESUMEN

Magnetotactic bacteria are Gram-negative bacteria that navigate along geomagnetic fields using the magnetosome, an organelle that consists of a membrane-enveloped magnetic nanoparticle. Magnetite formation and its properties are controlled by a specific set of proteins. MamC is a small magnetosome-membrane protein that is known to be active in iron biomineralization but its mechanism has yet to be clarified. Here, we studied the relationship between the MamC magnetite-interaction loop (MIL) structure and its magnetite interaction using an inert biomineralization protein-MamC chimera. Our determined structure shows an alpha-helical fold for MamC-MIL with highly charged surfaces. Additionally, the MamC-MIL induces the formation of larger magnetite crystals compared to protein-free and inert biomineralization protein control experiments. We suggest that the connection between the MamC-MIL structure and the protein's charged surfaces is crucial for magnetite binding and thus for the size control of the magnetite nanoparticles.


Asunto(s)
Proteínas Bacterianas/química , Óxido Ferrosoférrico , Bacterias Gramnegativas/química , Magnetosomas/química , Proteínas Bacterianas/metabolismo , Óxido Ferrosoférrico/metabolismo , Bacterias Gramnegativas/metabolismo , Magnetosomas/fisiología , Magnetospirillum , Nanopartículas/química , Unión Proteica , Relación Estructura-Actividad
8.
Proc Natl Acad Sci U S A ; 108(33): E480-7, 2011 Aug 16.
Artículo en Inglés | MEDLINE | ID: mdl-21784982

RESUMEN

The magnetosome, a biomineralizing organelle within magnetotactic bacteria, allows their navigation along geomagnetic fields. Magnetosomes are membrane-bound compartments containing magnetic nanoparticles and organized into a chain within the cell, the assembly and biomineralization of magnetosomes are controlled by magnetosome-associated proteins. Here, we describe the crystal structures of the magnetosome-associated protein, MamA, from Magnetospirillum magneticum AMB-1 and Magnetospirillum gryphiswaldense MSR-1. MamA folds as a sequential tetra-trico-peptide repeat (TPR) protein with a unique hook-like shape. Analysis of the MamA structures indicates two distinct domains that can undergo conformational changes. Furthermore, structural analysis of seven crystal forms verified that the core of MamA is not affected by crystallization conditions and identified three protein-protein interaction sites, namely a concave site, a convex site, and a putative TPR repeat. Additionally, relying on transmission electron microscopy and size exclusion chromatography, we show that highly stable complexes form upon MamA homooligomerization. Disruption of the MamA putative TPR motif or N-terminal domain led to protein mislocalization in vivo and prevented MamA oligomerization in vitro. We, therefore, propose that MamA self-assembles through its putative TPR motif and its concave site to create a large homooligomeric scaffold which can interact with other magnetosome-associated proteins via the MamA convex site. We discuss the structural basis for TPR homooligomerization that allows the proper function of a prokaryotic organelle.


Asunto(s)
Proteínas Bacterianas/metabolismo , Magnetospirillum/metabolismo , Polimerizacion , Cristalografía por Rayos X , Magnetospirillum/química , Conformación Proteica , Dominios y Motivos de Interacción de Proteínas
9.
J Struct Biol ; 180(3): 479-87, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22917855

RESUMEN

Magnetotactic bacteria enclose the magnetosome, a unique prokaryotic sub-cellular organelle that allows the biomineralization of magnetic nano-crystals. Membrane-coated magnetosomes are arranged into a linear chain that permits magnetotactic bacteria to navigate geomagnetic fields. Magnetosome assembly and biomineralization are controlled by conserved magnetosome-associated proteins, including MamA, a tetra-trico-peptide repeat (TPR)-containing protein that was shown to coat the magnetosome membrane. In this study, two MamA structures from Candidatus Magnetobacterium bavaricum (Mbav) were determined via X-ray crystallography. These structures confirm that Mbav MamA folds as a sequential TPR protein and shares a high degree of structural similarity with homologous MamA proteins from Magnetospirillum species. Furthermore, the two TPR-containing domains of MamA are separated by an interphylum-conserved region containing a flexible hinge that is involved in ligand binding and recognition. Finally, substantial differences were found in the local stabilization of the MamA N-terminal domain as a result of the loss of an evolutionary conserved salt bridge.


Asunto(s)
Proteínas Bacterianas/química , Bacterias Gramnegativas/química , Magnetosomas/química , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Secuencia Conservada , Cristalografía por Rayos X , Escherichia coli , Bacterias Gramnegativas/clasificación , Bacterias Gramnegativas/genética , Campos Magnéticos , Magnetospirillum/química , Magnetospirillum/genética , Nanopartículas del Metal/química , Simulación del Acoplamiento Molecular , Datos de Secuencia Molecular , Filogenia , Estabilidad Proteica , Estructura Terciaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética
10.
Artículo en Inglés | MEDLINE | ID: mdl-22869124

RESUMEN

MamM is a unique magnetosome-associated protein that shares substantial homology with cation diffusion facilitator (CDF) proteins, a group of heavy-metal-ion efflux transporters that participate in metal-ion homeostasis in all domains of life. Magnetotactic bacteria utilize CDF proteins in iron-oxide biomineralization and in magnetosome formation. Here, the crystallization and preliminary X-ray analysis of recombinant Magnetospirillum gryphiswaldense MamM is reported. The C-terminal domain of MamM was crystallized in the orthorhombic space group C222(1), with unit-cell parameters a = 37.1, b = 94.0, c = 53.3 Å. X-ray diffraction data were collected to a resolution of 2.0 Å.


Asunto(s)
Proteínas Bacterianas/química , Magnetosomas/química , Magnetospirillum/química , Cristalización , Cristalografía por Rayos X
11.
PLoS Negl Trop Dis ; 15(3): e0008352, 2021 03.
Artículo en Inglés | MEDLINE | ID: mdl-33760809

RESUMEN

Leishmania parasites cycle between sand-fly vectors and mammalian hosts adapting to alternating environments by stage-differentiation accompanied by changes in the proteome profiles. Translation regulation plays a central role in driving the differential program of gene expression since control of gene regulation in Leishmania is mostly post-transcriptional. The Leishmania genome encodes six eIF4E paralogs, some of which bind a dedicated eIF4G candidate, and each eIF4E is assumed to have specific functions with perhaps some overlaps. However, LeishIF4E2 does not bind any known eIF4G ortholog and was previously shown to comigrate with the polysomal fractions of sucrose gradients in contrast to the other initiation factors that usually comigrate with pre-initiation and initiation complexes. Here we deleted one of the two LeishIF4E2 gene copies using the CRISPR-Cas9 methodology. The deletion caused severe alterations in the morphology of the mutant cells that became round, small, and equipped with a very short flagellum that did not protrude from its pocket. Reduced expression of LeishIF4E2 had no global effect on translation and growth, unlike other LeishIF4Es; however, there was a change in the proteome profile of the LeishIF4E2(+/-) cells. Upregulated proteins were related mainly to general metabolic processes including enzymes involved in fatty acid metabolism, DNA repair and replication, signaling, and cellular motor activity. The downregulated proteins included flagellar rod and cytoskeletal proteins, as well as surface antigens involved in virulence. Moreover, the LeishIF4E2(+/-) cells were impaired in their ability to infect cultured macrophages. Overall, LeishIF4E2 does not behave like a general translation factor and its function remains elusive. Our results also suggest that the individual LeishIF4Es perform unique functions.


Asunto(s)
Adaptación Fisiológica/genética , Factor 4E Eucariótico de Iniciación/genética , Factor 4E Eucariótico de Iniciación/metabolismo , Factor 4G Eucariótico de Iniciación/metabolismo , Leishmania/genética , Secuencia de Aminoácidos/genética , Animales , Antígenos de Superficie/biosíntesis , Antígenos de Superficie/genética , Sistemas CRISPR-Cas/genética , Células Cultivadas , Proteínas del Citoesqueleto/biosíntesis , Proteínas del Citoesqueleto/genética , Regulación de la Expresión Génica/genética , Humanos , Macrófagos/parasitología , Psychodidae/parasitología , Alineación de Secuencia
12.
Biochemistry ; 49(35): 7634-42, 2010 Sep 07.
Artículo en Inglés | MEDLINE | ID: mdl-20681522

RESUMEN

The Na(+)-Ca(2+) exchanger (NCX) is a major Ca(2+) regulating protein. It is almost ubiquitously expressed. Cyclophilins (Cyps) make up a class of proteins that are involved in protein folding via their peptidyl prolyl cis-trans isomerase (PPIase) and chaperone domains. They are also the cellular receptors of cyclosporin A (CsA). Binding of CsA to cyclophilins inhibits both PPIase and chaperone activities. We have shown that treatment of transfected HEK 293 cells expressing the Na(+)-Ca(2+) exchanger NCX1 with CsA results in downregulation of surface expression and transport activity, without any reduction in the total level of cell NCX1 protein [Kimchi-Sarfaty, C., et al. (2002) J. Biol. Chem. 277 (4), 2505-2510]. In this work, we show that knockdown of cell CypA using targeting siRNA (without any CsA treatment) results in a reduction in the level of NCX1 surface expression, a decrease in the level of Na(+)-dependent Ca(2+) uptake, and no change in the total amount of cell NCX1 protein in NCX1.5-transfected HEK 293 cells and nontransfected H9c2 cells that express NCX1.1 naturally. It also reduced Na(+)-dependent Ca(2+) fluxes measured by changes in Fluo-4 AM fluorescence in single NCX1.5-transfected HEK 293 and single H9c2 cells. Knockdown of CypB had no significant effect on either transport activity, surface expression, NCX1 cell protein expression, or Ca(2+) fluxes. Overexpression of CypA or its R55A mutant, which exhibits a substantially reduced PPIase activity, alleviated the reduction of NCX1 surface expression caused by CsA treatment, suggesting that the PPIase domain was probably not mandatory for NCX1 functional expression. We suggest that CypA plays a role in the functional expression of NCX1 protein.


Asunto(s)
Ciclofilina A/metabolismo , Intercambiador de Sodio-Calcio/metabolismo , Células Cultivadas , Ciclofilina A/genética , Humanos , Interferencia de ARN , Transfección
13.
Biochim Biophys Acta Biomembr ; 1861(12): 183054, 2019 12 01.
Artículo en Inglés | MEDLINE | ID: mdl-31487494

RESUMEN

BteA, a 69-kDa cytotoxic protein, is a type III secretion system (T3SS) effector in the classical Bordetella, the etiological agents of pertussis and related mammalian respiratory diseases. Like other cytotoxicity-mediating effectors, BteA uses its multifunctional N-terminal domain to target phosphatidylinositol (PI)-rich microdomains in the host membrane. Despite their structural similarity, T3SS effectors exhibit a variable range of membrane interaction modes, and currently only limited structural information is available for the BteA membrane-targeting domain and the molecular mechanisms underlying its function. Employing a synergistic combination of structural methods, here we determine the structure of this functional domain and uncover key molecular determinants mediating its interaction with membranes. Residues 29-121 of BteA form an elongated four-helix bundle packed against two shorter perpendicular helices, the second of which caps the domain in a critical 'tip motif'. A flexible region preceding the BteA helical bundle contains the characteristic ß-motif required for binding its cognate chaperone BtcA. We show that BteA targets PI(4,5)P2-containing lipoprotein nanodiscs and binds a soluble PI(4,5)P2 analog via an extensive positively charged surface spanning its first two helices, and that this interaction is weaker for PI(3,5)P2 and abolished for PI(4)P. We confirmed this model of membrane-targeting by observation of BteA-induced changes in the structure of PI(4,5)P2-containing phospholipid bilayers using small-angle X-ray scattering (SAXS). We also extended these results to a larger BteA domain (residues 1-287), confirming its interaction with bilayers using calorimetry, fluorescence and SAXS methods. This novel view of the structural underpinnings of membrane targeting by BteA is an important step towards a comprehensive understanding of cytotoxicity in Bordetella, as well as interactions of a broad range of pathogens with their respective hosts.


Asunto(s)
Bordetella pertussis/metabolismo , Bordetella pertussis/ultraestructura , Sistemas de Secreción Tipo III/metabolismo , Secuencia de Aminoácidos/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Bordetella pertussis/patogenicidad , Cristalografía por Rayos X/métodos , Citotoxicidad Inmunológica/fisiología , Proteínas de la Membrana/metabolismo , Proteínas de la Membrana/ultraestructura , Chaperonas Moleculares/metabolismo , Fosfatidilinositoles/metabolismo , Unión Proteica/fisiología , Dispersión del Ángulo Pequeño , Relación Estructura-Actividad , Sistemas de Secreción Tipo III/fisiología , Difracción de Rayos X/métodos
14.
FEBS J ; 286(19): 3811-3830, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31152621

RESUMEN

Cell polarity is essential for building cell asymmetry in all eukaryotic cells. Drosophila oocyte and bristle development require the newly characterized Spn-F protein complex, which includes Spn-F, IKKε, and Javelin-like (Jvl), to establish polarity. Jvl is a novel microtubule (MT)-associated protein; however, the mechanism by which it regulates MT organization is still unknown. We found that overexpression of Jvl stabilizes MTs and that jvl is needed for stable MT arrangement at the bristle tip and organization of the dynamic MT throughout the bristle shaft. At low levels of expression in cultured cells, Jvl behaved as a microtubule plus-end tracking protein. We demonstrated that Jvl physically interacts with the highly conserved MT end-binding protein 1 (EB1) using yeast two-hybrid and GST pull-down assays. This interaction is, however, dispensable for Jvl function in oocyte and bristle development. In addition, using a MT-binding assay, we saw that Jvl-C terminus directly binds to MTs. We also revealed that oocyte developmental arrest caused by Jvl overexpression in the germline can be rescued by mutations in its partners, spn-F and ikkε, suggesting that complex formation with Spn-F and IKKε is required for Jvl function in vivo. In summary, our results show that the microtubule plus-end tracking and stabilizing activities of Jvl are central for controlling cell polarity of oocytes and bristles.


Asunto(s)
Polaridad Celular , Proteínas de Drosophila/metabolismo , Proteínas de Microfilamentos/metabolismo , Microtúbulos/metabolismo , Animales , Proteínas de Drosophila/química , Drosophila melanogaster/metabolismo , Femenino , Proteínas Fluorescentes Verdes/genética , Infertilidad Femenina/genética , Proteínas de Microfilamentos/química , Oogénesis , Unión Proteica
15.
Acta Crystallogr D Struct Biol ; 74(Pt 1): 10-20, 2018 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-29372895

RESUMEN

Biomineralization is the process of mineral formation by organisms and involves the uptake of ions from the environment in order to produce minerals, with the process generally being mediated by proteins. Most proteins that are involved in mineral interactions are predicted to contain disordered regions containing large numbers of negatively charged amino acids. Magnetotactic bacteria, which are used as a model system for iron biomineralization, are Gram-negative bacteria that can navigate through geomagnetic fields using a specific organelle, the magnetosome. Each organelle comprises a membrane-enveloped magnetic nanoparticle, magnetite, the formation of which is controlled by a specific set of proteins. One of the most abundant of these proteins is MamC, a small magnetosome-associated integral membrane protein that contains two transmembrane α-helices connected by an ∼21-amino-acid peptide. In vitro studies of this MamC peptide showed that it forms a helical structure that can interact with the magnetite surface and affect the size and shape of the growing crystal. Our results show that a disordered structure of the MamC magnetite-interacting component (MamC-MIC) abolishes its interaction with magnetite particles. Moreover, the size and shape of magnetite crystals grown in in vitro magnetite-precipitation experiments in the presence of this disordered peptide were different from the traits of crystals grown in the presence of other peptides or in the presence of the helical MIC. It is suggested that the helical structure of the MamC-MIC is important for its function during magnetite formation.


Asunto(s)
Proteínas Bacterianas/química , Óxido Ferrosoférrico/metabolismo , Hierro/metabolismo , Magnetosomas/química , Fragmentos de Péptidos/química , Secuencia de Aminoácidos , Proteínas Bacterianas/metabolismo , Cristalografía por Rayos X , Magnetosomas/metabolismo , Modelos Moleculares , Fragmentos de Péptidos/metabolismo , Conformación Proteica
16.
Sci Rep ; 8(1): 2430, 2018 02 05.
Artículo en Inglés | MEDLINE | ID: mdl-29403068

RESUMEN

The pancrustacean theory groups crustaceans and hexapods (once thought to comprise separate clades within the Arthropoda) into a single clade. A key feature common to all pancrustaceans is their chitinous exoskeleton, with a major contribution by cuticular proteins. Among these, are the CPAP3's, a family of cuticular proteins, first identified in the hexapod Drosophila melanogaster and characterized by an N-terminal signaling peptide and three chitin-binding domains. In this study, CPAP3 proteins were mined from a transcriptomic library of a decapod crustacean, the crayfish Cherax quadricarinatus. Phylogenetic analysis of other CPAP3 proteins from hexapods and other crustaceans showed a high degree of conservation. Characterization of the crayfish proteins, designated CqCPAP3's, suggested a major role for CPAP3'sin cuticle formation. Loss-of-function experiments using RNAi supported such a notion by demonstrating crucial roles for several CqCPAP3 proteins during molting. A putative mode of action for the CqCPAP3 proteins -theoretically binding three chitin strands- was suggested by the structural data obtained from a representative recombinant CqCPAP3. The similarities between the CqCPAP3 proteins and their hexapod homologues further demonstrated common genetic and proteinaceous features of cuticle formation in pancrustaceans, thereby reinforcing the linkage between these two highly important phylogenetic groups.


Asunto(s)
Proteínas de Artrópodos/química , Astacoidea/genética , Quitina/química , Insectos/genética , Filogenia , Transcriptoma , Exoesqueleto/química , Exoesqueleto/metabolismo , Animales , Proteínas de Artrópodos/antagonistas & inhibidores , Proteínas de Artrópodos/genética , Proteínas de Artrópodos/metabolismo , Astacoidea/clasificación , Astacoidea/metabolismo , Biomineralización/genética , Quitina/biosíntesis , Quitina/genética , Clonación Molecular , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Insectos/clasificación , Insectos/metabolismo , Muda , Isoformas de Proteínas/antagonistas & inhibidores , Isoformas de Proteínas/química , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , ARN Interferente Pequeño/genética , ARN Interferente Pequeño/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
17.
Sci Rep ; 6: 26550, 2016 05 23.
Artículo en Inglés | MEDLINE | ID: mdl-27211820

RESUMEN

Ferritin has gained significant attention as a potential reporter gene for in vivo imaging by magnetic resonance imaging (MRI). However, due to the ferritin ferrihydrite core, the relaxivity and sensitivity for detection of native ferritin is relatively low. We report here on a novel chimeric magneto-ferritin reporter gene - ferritin-M6A - in which the magnetite binding peptide from the magnetotactic bacteria magnetosome-associated Mms6 protein was fused to the C-terminal of murine h-ferritin. Biophysical experiments showed that purified ferritin-M6A assembled into a stable protein cage with the M6A protruding into the cage core, enabling magnetite biomineralisation. Ferritin-M6A-expressing C6-glioma cells showed enhanced (per iron) r2 relaxivity. MRI in vivo studies of ferritin-M6A-expressing tumour xenografts showed enhanced R2 relaxation rate in the central hypoxic region of the tumours. Such enhanced relaxivity would increase the sensitivity of ferritin as a reporter gene for non-invasive in vivo MRI-monitoring of cell delivery and differentiation in cellular or gene-based therapies.


Asunto(s)
Apoferritinas/metabolismo , Neoplasias Encefálicas/diagnóstico por imagen , Compuestos Férricos/metabolismo , Óxido Ferrosoférrico/metabolismo , Proteínas Recombinantes de Fusión/metabolismo , Animales , Apoferritinas/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Neoplasias Encefálicas/metabolismo , Línea Celular Tumoral , Genes Reporteros , Ingeniería Genética , Imagen por Resonancia Magnética , Ratones , Modelos Moleculares , Trasplante de Neoplasias , Ratas , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/genética
18.
Sci Rep ; 6: 31933, 2016 08 23.
Artículo en Inglés | MEDLINE | ID: mdl-27550551

RESUMEN

Cation diffusion facilitators (CDF) are highly conserved, metal ion efflux transporters that maintain divalent transition metal cation homeostasis. Most CDF proteins contain two domains, the cation transporting transmembrane domain and the regulatory cytoplasmic C-terminal domain (CTD). MamM is a magnetosome-associated CDF protein essential for the biomineralization of magnetic iron-oxide particles in magnetotactic bacteria. To investigate the structure-function relationship of CDF cytoplasmic domains, we characterized a MamM M250P mutation that is synonymous with the disease-related mutation L349P of the human CDF protein ZnT-10. Our results show that the M250P exchange in MamM causes severe structural changes in its CTD resulting in abnormal reduced function. Our in vivo, in vitro and in silico studies indicate that the CTD fold is critical for CDF proteins' proper function and support the previously suggested role of the CDF cytoplasmic domain as a CDF regulatory element. Based on our results, we also suggest a mechanism for the effects of the ZnT-10 L349P mutation in human.


Asunto(s)
Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Mutación , Transportador 8 de Zinc/química , Transportador 8 de Zinc/genética , Proteínas Bacterianas/metabolismo , Dicroismo Circular , Clonación Molecular , Cristalografía por Rayos X , Humanos , Modelos Moleculares , Simulación de Dinámica Molecular , Dominios Proteicos , Pliegue de Proteína , Estructura Secundaria de Proteína , Homología Estructural de Proteína , Transportador 8 de Zinc/metabolismo
19.
Front Mol Biosci ; 2: 25, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26052516

RESUMEN

Magnetotactic bacteria (MTB) are a diverse group of aquatic bacteria that have the magnetotaxis ability to align themselves along the geomagnetic field lines and to navigate to a microoxic zone at the bottom of chemically stratified natural water. This special navigation is the result of a unique linear assembly of a specialized organelle, the magnetosome, which contains a biomineralized magnetic nanocrystal enveloped by a cytoplasmic membrane. The Magnetospirillum gryphiswaldense MtxA protein (MGR_0208) was suggested to play a role in bacterial magnetotaxis due to its gene location in an operon together with putative signal transduction genes. Since no homology is found for MtxA, and to better understand the role and function of MtxA in MTBés magnetotaxis, we initiated structural and functional studies of MtxA via X-ray crystallography and deletion mutagenesis. Here, we present the crystal structure of the MtxA C-terminal domain and provide new insights into its sequence-structure relationship.

20.
PLoS One ; 10(6): e0130394, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26114501

RESUMEN

MamA is a highly conserved protein found in magnetotactic bacteria (MTB), a diverse group of prokaryotes capable of navigating according to magnetic fields - an ability known as magnetotaxis. Questions surround the acquisition of this magnetic navigation ability; namely, whether it arose through horizontal or vertical gene transfer. Though its exact function is unknown, MamA surrounds the magnetosome, the magnetic organelle embedding a biomineralised nanoparticle and responsible for magnetotaxis. Several structures for MamA from a variety of species have been determined and show a high degree of structural similarity. By determining the structure of MamA from Desulfovibrio magneticus RS-1 using X-ray crystallography, we have opened up the structure-sequence landscape. As such, this allows us to perform structural- and phylogenetic-based analyses using a variety of previously determined MamA from a diverse range of MTB species across various phylogenetic groups. We found that MamA has remained remarkably constant throughout evolution with minimal change between different taxa despite sequence variations. These findings, coupled with the generation of phylogenetic trees using both amino acid sequences and 16S rRNA, indicate that magnetotaxis likely did not spread via horizontal gene transfer and instead has a significantly earlier, primordial origin.


Asunto(s)
Proteínas Bacterianas/química , Desulfovibrio/química , Evolución Molecular , Transferencia de Gen Horizontal , Filogenia , Proteínas Bacterianas/genética , Cristalografía por Rayos X , Desulfovibrio/genética , Estructura Terciaria de Proteína , ARN Bacteriano/genética , ARN Ribosómico 16S/genética
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