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1.
Arch Biochem Biophys ; 674: 108097, 2019 10 15.
Artículo en Inglés | MEDLINE | ID: mdl-31494117

RESUMEN

Living cells employ various defence mechanisms against reactive oxygen species and free radicals. Besides protecting enzymes such as superoxide dismutase, catalase and peroxidase, non-enzymatic antioxidant molecules also play an important role as radical scavengers. Within bacteria the amino acid derivative ectoine (2-methyl-3,4,5,6-tetrahydropyrimidine-4-carboxylate) is the most abundant compatible solute and stress protectant. Although this compound is already produced commercially for applications as moisturizer and skin-care product, it has been a matter of debate whether ectoine also has radical-scavenging activity. Here we report on its hydroxyl radical scavenging activity in comparison to other compatible solutes and describe the reaction products obtained when ectoine is exposed to hydroxyl radicals generated by the Fenton reaction. In a sodium salicylate scavenging test system this compatible solute performed as well as mannitol. As a consequence of its reaction with hydroxyl radicals, ectoine was converted into two major products: N-acetimide aspartate and N-acetimide-ß-alanine. We propose a reaction mechanism in which the heterocycle of the compatible solute ectoine is cleaved and further oxidized at the C-terminus. The proven radical scavenging ability of ectoine will help to explain observed effects as anti-inflammatory compound in skin, lung and bowel disease.


Asunto(s)
Aminoácidos Diaminos/química , Depuradores de Radicales Libres/química , Radical Hidroxilo/química , Iminas/síntesis química , Oxidación-Reducción
2.
Dig Dis Sci ; 64(2): 409-420, 2019 02.
Artículo en Inglés | MEDLINE | ID: mdl-30269272

RESUMEN

BACKGROUND: Inflammatory bowel diseases (IBD) are multifactorial disorders affecting millions of people worldwide with alarmingly increasing incidences every year. Dysfunction of the intestinal epithelial barrier is associated with IBD pathogenesis, and therapies include anti-inflammatory drugs that enhance intestinal barrier function. However, these drugs often have adverse side effects thus warranting the search for alternatives. Compatible solutes such as bacterial ectoines stabilize cell membranes and proteins. AIM: To unravel whether ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid) and homoectoine (4,5,6,7-tetrahydro-2-methyl-1H-(1,3)-diazepine-4-carboxylic acid), a synthetic derivative of ectoine, have beneficial effects during dextran sulfate sodium (DSS)-induced colitis in mice. METHODS/RESULTS: We found that the disease activity index was significantly reduced by both ectoines. DSS-induced edema formation, epithelial permeability, leukocyte recruitment and tissue damage were reduced by ectoine and homoectoine, with the latter having stronger effects. Interestingly, the claudin switch usually observed during colitis (decreased expression of claudin-1 and increased expression of the leaky claudin-2) was completely prevented by homoectoine, whereas ectoine only reduced claudin-2 expression. Concomitantly, only homoectoine ameliorated the drop in transepithelial electrical resistance induced by IFN-γ and TNF-α in Caco-2 cells. Both ectoines inhibited loss of ZO-1 and occludin and prevented IFN-γ/TNF-α-induced increased paracellular flux of 4 kDa FITC-dextran in vitro. Moreover, both ectoines reduced expression of pro-inflammatory cytokines and oxidative stress during colitis. CONCLUSION: While both ectoine and homoectoine have protective effects on the epithelial barrier during inflammation, only homoectoine completely prevented the inflammatory claudin switch in tight junctions. Thus, homoectoine may serve as diet supplement in IBD patients to reach or extend remission.


Asunto(s)
Aminoácidos Diaminos/farmacología , Claudina-1/efectos de los fármacos , Claudina-2/efectos de los fármacos , Colitis/patología , Epitelio/efectos de los fármacos , Uniones Estrechas/efectos de los fármacos , Animales , Células CACO-2 , Claudina-1/genética , Claudina-1/metabolismo , Claudina-2/genética , Claudina-2/metabolismo , Colitis/inducido químicamente , Colitis/metabolismo , Sulfato de Dextran/toxicidad , Modelos Animales de Enfermedad , Edema , Impedancia Eléctrica , Humanos , Técnicas In Vitro , Interferón gamma/farmacología , Masculino , Ratones , Ratones Endogámicos C57BL , Microscopía Fluorescente , Estrés Oxidativo/efectos de los fármacos , Permeabilidad/efectos de los fármacos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Uniones Estrechas/metabolismo , Factor de Necrosis Tumoral alfa/farmacología
3.
Int J Syst Evol Microbiol ; 68(7): 2199-2208, 2018 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-29781801

RESUMEN

Methanogenic enrichments from hypersaline lakes at moderate thermophilic conditions have resulted in the cultivation of an unknown deep lineage of euryarchaeota related to the class Halobacteria. Eleven soda lake isolates and three salt lake enrichment cultures were methyl-reducing methanogens that utilize C1 methylated compounds as electron acceptors and H2 or formate as electron donors, but they were unable to grow on either substrates alone or to form methane from acetate. They are extreme halophiles, growing optimally at 4 M total Na+ and the first representatives of methanogens employing the 'salt-in' osmoprotective mechanism. The salt lake subgroup is neutrophilic, whereas the soda lake isolates are obligate alkaliphiles, with an optimum around pH 9.5. Both grow optimally at 50 °C. The genetic diversity inside the two subgroups is very low, indicating that the soda and salt lake clusters consist of a single genetic species each. The phylogenetic distance between the two subgroups is in the range of distant genera, whereas the distance to other euryarchaea is below 83 % identity of the 16S rRNA gene. These isolates and enriched methanogens, together with closely related environmental clones from hypersaline habitats (the SA1 group), form a novel class-level clade in the phylum Euryarchaeota. On the basis of distinct phenotypic and genetic properties, the soda lake isolates are classified into a new genus and species, Methanonatronarchaeum thermophilum, with the type strain AMET1T (DSM 28684T=NBRC 110805T=UNIQEM U982T), and the salt lake methanogens into a candidate genus and species 'Candidatus Methanohalarchaeum thermophilum'. These organisms are proposed to form novel family, order and class Methanonatronarchaeaceae fam. nov., Methanonatronarchaeales ord. nov. and Methanonatronarchaeia classis nov., within the phylum Euryarchaeota.


Asunto(s)
Euryarchaeota/clasificación , Lagos/microbiología , Metano/metabolismo , Filogenia , Salinidad , Composición de Base , California , Crecimiento Quimioautotrófico , Egipto , Euryarchaeota/genética , Euryarchaeota/aislamiento & purificación , ARN Ribosómico 16S/genética , Federación de Rusia , Análisis de Secuencia de ADN
4.
Arch Microbiol ; 199(1): 17-28, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-27443666

RESUMEN

This study examined the influence of prior salt adaptation on the survival rate of (hyper)-thermophilic bacteria and archaea after desiccation and UV or ionizing irradiation treatment. Survival rates after desiccation of Hydrogenothermus marinus and Archaeoglobus fulgidus increased considerably when the cells were cultivated at higher salt concentrations before drying. By doubling the concentration of NaCl, a 30 times higher survival rate of H. marinus after desiccation was observed. Under salt stress, the compatible solute diglycerol phosphate in A. fulgidus and glucosylglycerate in H. marinus accumulated in the cytoplasm. Several different compatible solutes were added as protectants to A. fulgidus and H. marinus before desiccation treatment. Some of these had similar effects as intracellularly produced compatible solutes. The survival rates of H. marinus and A. fulgidus after exposure to UV-C (254 nm) or ionizing X-ray/gamma radiation were irrespective of the salt-induced synthesis or the addition of compatible solutes.


Asunto(s)
Archaeoglobus fulgidus/efectos de la radiación , Bacterias/efectos de la radiación , Archaeoglobus fulgidus/química , Archaeoglobus fulgidus/efectos de los fármacos , Archaeoglobus fulgidus/fisiología , Bacterias/química , Bacterias/efectos de los fármacos , Bacterias/metabolismo , Desecación , Glicerofosfatos/farmacología , Presión Osmótica , Radiación Ionizante , Tolerancia a la Sal , Cloruro de Sodio/metabolismo
5.
Int J Syst Evol Microbiol ; 67(10): 4161-4167, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28920839

RESUMEN

Two proteolytic bacterial strains, BSker2T and BSker3T, were enriched from sediments of hypersaline alkaline lakes in Kulunda Steppe (Altai, Russia) with chicken feathers as substrate, followed by pure culture isolation on hypersaline alkaline media with casein. The cells were non-motile, filamentous, flexible rods. The isolates were obligately aerobic heterotrophs utilizing proteins and peptides as growth substrates. Both were obligate alkaliphiles, but differed in their pH optimum for growth: pH 9.5-9.8 for Bsker2T and pH 8.5-8.8 for BSker3T. The salt range for growth of both isolates was between 2 and 4.5 M total Na+ with an optimum at 2.5-3 M. No organic osmolytes were detected in cells of BSker2T, but they accumulated high intracellular concentrations of K+. The polar lipid fatty acids were dominated by unsaturated C16 and C18 species. The 16S rRNA gene phylogeny indicated that both strains belong to the recently proposed phylum Rhodothermaeota. BSker2T forms a novel genus-level branch, while BSker3T represents a novel species-level member in the genus Longimonas. On the basis of distinct phenotypic and genotypic properties, strain BSker2T (=JCM 31342T=UNIQEM U1009T) is proposed to be classified as a representative of a novel genus and species, Natronotalea proteinilyticagen. nov., sp. nov., and strain BSker3T (=JCM 31343T=UNIQEM U1010T) as a representative of a novel species, Longimonas haloalkaliphila sp. nov.


Asunto(s)
Álcalis , Bacteroidetes/clasificación , Lagos/microbiología , Filogenia , Salinidad , Técnicas de Tipificación Bacteriana , Bacteroidetes/genética , Bacteroidetes/aislamiento & purificación , Composición de Base , ADN Bacteriano/genética , Ácidos Grasos/química , Concentración de Iones de Hidrógeno , ARN Ribosómico 16S/genética , Federación de Rusia , Análisis de Secuencia de ADN
6.
Microbiology (Reading) ; 162(4): 651-661, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26842314

RESUMEN

Only a few myxobacteria are known to date that are classified as marine, owing to their salt dependency. In this study, the salt tolerance mechanism of these bacteria was investigated. To this end, a growth medium was designed in which the mutated Escherichia coli strain BKA13 served as sole food source for the predatory, heterotrophic myxobacteria. This enabled measurement of the osmolytes without any background and revealed that the closely related strains Enhygromyxa salina SWB007 and Plesiocystis pacifica SIR-1 developed different strategies to handle salt stress. Ple. pacifica SIR-1, which was grown between 1 and 4 % NaCl, relies solely on the accumulation of amino acids, while Enh. salina SWB007, which was grown between 0.5 and 3 % NaCl, employs, besides betaine, hydroxyectoine as the major compatible solute. In accordance with this analysis, only in the latter strain was a locus identified that codes for genes corresponding to the biosynthesis of betaine, ectoine and hydroxyectoine.

7.
Extremophiles ; 19(1): 87-99, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25142158

RESUMEN

Acidiphilium cryptum is an acidophilic, heterotrophic α-Proteobacterium which thrives in acidic, metal-rich environments (e.g. acid mine drainage). Recently, an ectABCDask gene cluster for biosynthesis of the compatible solutes ectoine and hydroxyectoine was detected in the genome sequence of A. cryptum JF-5. We were able to demonstrate that the type strain A. cryptum DSM 2389(T) is capable of synthesizing the compatible solute hydroxyectoine in response to moderate osmotic stress caused by sodium chloride and aluminium sulphate, respectively. Furthermore, we used the A. cryptum JF-5 sequence to amplify the ectABCDask gene cluster from strain DSM 2389(T) and achieved heterologous expression of the gene cluster in Escherichia coli. Hence, we could for the first time prove metabolic functionality of the genes responsible for hydroxyectoine biosynthesis in the acidophile A. cryptum. In addition, we present information on specific enzyme activity of A. cryptum DSM 2389(T) ectoine synthase (EctC) in vitro. In contrast to EctCs from halophilic microorganisms, the A. cryptum enzyme exhibits a higher isoelectric point, thus a lower acidity, and has maximum specific activity in the absence of sodium chloride.


Asunto(s)
Acidiphilium/genética , Aminoácidos Diaminos/biosíntesis , Familia de Multigenes , Compuestos de Alumbre/química , Biología Computacional , Regulación Bacteriana de la Expresión Génica , Genes Bacterianos , Vectores Genéticos , Hidroliasas/metabolismo , Concentración de Iones de Hidrógeno , Punto Isoeléctrico , Presión Osmótica , Cloruro de Sodio/química
8.
Appl Environ Microbiol ; 80(1): 247-56, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24162565

RESUMEN

Wallemia ichthyophaga is a fungus from the ancient basidiomycetous genus Wallemia (Wallemiales, Wallemiomycetes) that grows only at salinities between 10% (wt/vol) NaCl and saturated NaCl solution. This obligate halophily is unique among fungi. The main goal of this study was to determine the optimal salinity range for growth of the halophilic W. ichthyophaga and to unravel its osmoadaptation strategy. Our results showed that growth on solid growth media was extremely slow and resulted in small colonies. On the other hand, in the liquid batch cultures, the specific growth rates of W. ichthyophaga were higher, and the biomass production increased with increasing salinities. The optimum salinity range for growth of W. ichthyophaga was between 15 and 20% (wt/vol) NaCl. At 10% NaCl, the biomass production and the growth rate were by far the lowest among all tested salinities. Furthermore, the cell wall content in the dry biomass was extremely high at salinities above 10%. Our results also showed that glycerol was the major osmotically regulated solute, since its accumulation increased with salinity and was diminished by hypo-osmotic shock. Besides glycerol, smaller amounts of arabitol and trace amounts of mannitol were also detected. In addition, W. ichthyophaga maintained relatively small intracellular amounts of potassium and sodium at constant salinities, but during hyperosmotic shock, the amounts of both cations increased significantly. Given our results and the recent availability of the genome sequence, W. ichthyophaga should become well established as a novel model organism for studies of halophily in eukaryotes.


Asunto(s)
Basidiomycota/efectos de los fármacos , Basidiomycota/fisiología , Presión Osmótica , Solución Salina Hipertónica , Estrés Fisiológico , Adaptación Fisiológica , Basidiomycota/crecimiento & desarrollo , Basidiomycota/metabolismo , Biomasa , Glicerol/metabolismo , Salinidad
9.
Appl Environ Microbiol ; 77(4): 1368-74, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21169432

RESUMEN

We report on the presence of a functional hydroxyectoine biosynthesis gene cluster, ectABCD-ask, in Pseudomonas stutzeri DSM5190(T) and evaluate the suitability of P. stutzeri DSM5190(T) for hydroxyectoine production. Furthermore, we present information on heterologous de novo production of the compatible solute hydroxyectoine in Escherichia coli. In this host, the P. stutzeri gene cluster remained under the control of its salt-induced native promoters. We also noted the absence of trehalose when hydroxyectoine genes were expressed, as well as a remarkable inhibitory effect of externally applied betaine on hydroxyectoine synthesis. The specific heterologous production rate in E. coli under the conditions employed exceeded that of the natural producer Pseudomonas stutzeri and, for the first time, enabled effective hydroxyectoine production at low salinity (2%), with the added advantage of simple product processing due to the absence of other cosolutes.


Asunto(s)
Aminoácidos Diaminos/biosíntesis , Aminoácidos Diaminos/genética , Escherichia coli/genética , Genes Bacterianos , Microbiología Industrial , Pseudomonas stutzeri/genética , Pseudomonas stutzeri/metabolismo , Betaína/metabolismo , Betaína/farmacología , Escherichia coli/metabolismo , Regulación Bacteriana de la Expresión Génica , Datos de Secuencia Molecular , Familia de Multigenes , Reacción en Cadena de la Polimerasa , Regiones Promotoras Genéticas , Salinidad , Trehalosa/metabolismo
10.
Appl Microbiol Biotechnol ; 91(1): 113-22, 2011 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-21468713

RESUMEN

A new cyclic amino acid was detected in a deletion mutant of the moderately halophilic bacterium Halomonas elongata deficient in ectoine synthesis. Using mass spectroscopy (MS) and nuclear magnetic resonance (NMR) techniques, the substance was identified as 5-amino-3,4-dihydro-2H-pyrrole-2-carboxylate (ADPC). We were able to demonstrate that ADPC is the product of a side reaction of lone ectoine synthase (EC 4.2.1.108), which forms ADPC by cyclic condensation of glutamine. This reaction was shown to be reversible. Subsequently, a number of ectoine derivatives, in particular 4,5-dihydro-2-methylimidazole-4-carboxylate (DHMICA) and homoectoine, were also shown to be cleaved by ectoine synthase, which is classified as a hydro-lyase. This study thus reports for the first time that ectoine synthase accepts more than one substrate and is a reversible enzyme able to catalyze both the intramolecular condensation into and the hydrolytic cleavage of cyclic amino acid derivatives. As ADPC supports growth of bacteria under salt stress conditions and stabilizes enzymes against freeze-thaw denaturation, it displays typical properties of compatible solutes. As ADPC has not yet been described as a natural compound, it is presented here as the first man-made compatible solute created through genetic engineering.


Asunto(s)
Proteínas Bacterianas/metabolismo , Ingeniería Genética , Halomonas/enzimología , Hidroliasas/metabolismo , Prolina/análogos & derivados , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Halomonas/genética , Halomonas/metabolismo , Hidroliasas/química , Hidroliasas/genética , Prolina/metabolismo
11.
mSystems ; 6(2)2021 Apr 27.
Artículo en Inglés | MEDLINE | ID: mdl-33906913

RESUMEN

The genus Thioalkalivibrio comprises sulfur-oxidizing bacteria thriving in soda lakes at high pH and salinity. Depending on the geographical location and the season, these lakes can strongly vary in temperature. To obtain a comprehensive understanding of the molecular and physiological adaptations to low temperature, we compared the responses of two Thioalkalivibrio strains to low (10°C) and high (30°C) temperatures. For this, the strains were grown under controlled conditions in chemostats and analyzed for their gene expression (RNA sequencing [RNA-Seq]), membrane lipid composition, and glycine betaine content. The strain Thioalkalivibrio versutus AL2T originated from a soda lake in southeast Siberia that is exposed to strong seasonal temperature differences, including freezing winters, whereas Thioalkalivibrio nitratis ALJ2 was isolated from an East African Rift Valley soda lake with a constant warm temperature the year round. The strain AL2T grew faster than ALJ2 at 10°C, likely due to its 3-fold-higher concentration of the osmolyte glycine betaine. Moreover, significant changes in the membrane lipid composition were observed for both strains, leading to an increase in their unsaturated fatty acid content via the Fab pathway to avoid membrane stiffness. Genes for the transcriptional and translational machinery, as well as for counteracting cold-induced hampering of nucleotides and proteins, were upregulated. Oxidative stress was reduced by induction of vitamin B12 biosynthesis genes, and growth at 10°C provoked downregulation of genes involved in the second half of the sulfur oxidation pathway. Genes for intracellular signal transduction were differentially expressed, and interestingly, AL2T upregulated flagellin expression, whereas ALJ2 downregulated it.IMPORTANCE In addition to their haloalkaline conditions, soda lakes can also harbor a variety of other extreme parameters, to which their microbial communities need to adapt. However, for most of these supplementary stressors, it is not well known yet how haloalkaliphiles adapt and resist. Here, we studied the strategy for adaptation to low temperature in the haloalkaliphilic genus Thioalkalivibrio by using two strains isolated from soda lakes with different temperature regimes. Even though the strains showed a strong difference in growth rate at 10°C, they exhibited similar molecular and physiological adaptation responses. We hypothesize that they take advantage of resistance mechanisms against other stressors commonly found in soda lakes, which are therefore maintained in the bacteria living in the absence of low-temperature pressure. A major difference, however, was detected for their glycine betaine content at 10°C, highlighting the power of this osmolyte to also act as a key compound in cryoprotection.

12.
Front Microbiol ; 10: 2745, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31827466

RESUMEN

Extant enzymes are not only highly efficient biocatalysts for a single, or a group of chemically closely related substrates but often have retained, as a mark of their evolutionary history, a certain degree of substrate ambiguity. We have exploited the substrate ambiguity of the ectoine hydroxylase (EctD), a member of the non-heme Fe(II)-containing and 2-oxoglutarate-dependent dioxygenase superfamily, for such a task. Naturally, the EctD enzyme performs a precise regio- and stereoselective hydroxylation of the ubiquitous stress protectant and chemical chaperone ectoine (possessing a six-membered pyrimidine ring structure) to yield trans-5-hydroxyectoine. Using a synthetic ectoine derivative, homoectoine, which possesses an expanded seven-membered diazepine ring structure, we were able to selectively generate, both in vitro and in vivo, trans-5-hydroxyhomoectoine. For this transformation, we specifically used the EctD enzyme from Pseudomonas stutzeri in a whole cell biocatalyst approach, as this enzyme exhibits high catalytic efficiency not only for its natural substrate ectoine but also for homoectoine. Molecular docking approaches with the crystal structure of the Sphingopyxis alaskensis EctD protein predicted the formation of trans-5-hydroxyhomoectoine, a stereochemical configuration that we experimentally verified by nuclear-magnetic resonance spectroscopy. An Escherichia coli cell factory expressing the P. stutzeri ectD gene from a synthetic promoter imported homoectoine via the ProU and ProP compatible solute transporters, hydroxylated it, and secreted the formed trans-5-hydroxyhomoectoine, independent from all currently known mechanosensitive channels, into the growth medium from which it could be purified by high-pressure liquid chromatography.

13.
Genes (Basel) ; 9(4)2018 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-29597294

RESUMEN

It has been firmly established that organic osmolytes (compatible solutes) of halophilic Bacteria and Archaea have positive effects on conformation and activity of proteins, and may therefore improve their functional production. In particular, the amino acid derivative ectoine is known for its conformational stabilization, aggregation suppression, and radical protection properties. The natural producer and industrial production strain Halomonas elongata accumulates ectoine in the cytoplasm, and as a result offers a unique stabilizing environment for recombinant proteins. For the construction of broad hoast range vector systems with fluorescent reporter proteins, we chose the salt-inducible promoter region of the ectoine gene cluster (promA). A closer inspection of the genetic background revealed that its combination of sigma 38 (σ38) and sigma 70 (σ70) promoters was followed by a weak ribosomal binding site (RBS). This inspired a systematic approach for the construction of a promA-based vector series with a synthetic RBS region using the RBS Calculator v2.0, which resulted in a greatly improved salt-dependent expression-even in a deletion construct lacking the σ38 promoter. To expand the application range of this expression system, we looked further into the possible export of recombinant proteins into the periplasm. Both sec and tat leader sequences from H. elongata proved to be suitable for directed periplasmic transport into an extreme environment of freely selectable ionic strength.

14.
Biochim Biophys Acta ; 1764(7): 1234-42, 2006 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-16797260

RESUMEN

Compatible solutes are small organic osmoprotectants that have the capability to stabilize proteins. In coupled assays, the effect of the solutes ectoine, hydroxyectoine and betaine on the activation of the zymogens trypsinogen and chymotrypsinogen, catalyzed by enteropeptidase and trypsin, respectively, was studied. To different extents, all solutes protected the zymogens against activation. Ectoine (800 mM) was the most potent solute in reducing the formation of trypsin to 4% of the control value and of chymotrypsin to 23%. In separate experiments, the ability of the solutes to preserve proteolytic activity during incubation was investigated. After 4 h, trypsin and chymotrypsin completely lost their activity, but in the presence of ectoine, approximately 50% residual activity was maintained. It is proposed that a conformational shift of the protein towards folded, native-like states induced by preferential exclusion of the solute is responsible for the stabilizing and chaperone-like effects.


Asunto(s)
Quimotripsinógeno/química , Endopeptidasas/química , Precursores Enzimáticos/química , Tripsinógeno/química , Aminoácidos Diaminos/química , Aminoácidos Diaminos/farmacología , Animales , Betaína/química , Betaína/farmacología , Catálisis/efectos de los fármacos , Bovinos , Quimotripsinógeno/metabolismo , Endopeptidasas/metabolismo , Enteropeptidasa/química , Enteropeptidasa/metabolismo , Activación Enzimática/efectos de los fármacos , Precursores Enzimáticos/metabolismo , Estabilidad de Enzimas , Estructura Molecular , Porcinos , Tripsina/química , Tripsina/metabolismo , Tripsinógeno/metabolismo
15.
Nat Microbiol ; 2: 17081, 2017 May 30.
Artículo en Inglés | MEDLINE | ID: mdl-28555626

RESUMEN

Methanogenic archaea are major players in the global carbon cycle and in the biotechnology of anaerobic digestion. The phylum Euryarchaeota includes diverse groups of methanogens that are interspersed with non-methanogenic lineages. So far, methanogens inhabiting hypersaline environments have been identified only within the order Methanosarcinales. We report the discovery of a deep phylogenetic lineage of extremophilic methanogens in hypersaline lakes and present analysis of two nearly complete genomes from this group. Within the phylum Euryarchaeota, these isolates form a separate, class-level lineage 'Methanonatronarchaeia' that is most closely related to the class Halobacteria. Similar to the Halobacteria, 'Methanonatronarchaeia' are extremely halophilic and do not accumulate organic osmoprotectants. The high intracellular concentration of potassium implies that 'Methanonatronarchaeia' employ the 'salt-in' osmoprotection strategy. These methanogens are heterotrophic methyl-reducers that use C1-methylated compounds as electron acceptors and formate or hydrogen as electron donors. The genomes contain an incomplete and apparently inactivated set of genes encoding the upper branch of methyl group oxidation to CO2 as well as membrane-bound heterodisulfide reductase and cytochromes. These features differentiate 'Methanonatronarchaeia' from all known methyl-reducing methanogens. The discovery of extremely halophilic, methyl-reducing methanogens related to haloarchaea provides insights into the origin of methanogenesis and shows that the strategies employed by methanogens to thrive in salt-saturating conditions are not limited to the classical methylotrophic pathway.


Asunto(s)
Evolución Biológica , Euryarchaeota/genética , Euryarchaeota/metabolismo , Redes y Vías Metabólicas/genética , Metano/metabolismo , Salinidad , Anaerobiosis , Dióxido de Carbono/metabolismo , Transporte de Electrón , Formiatos/metabolismo , Genoma Arqueal , Hidrógeno/metabolismo , Lagos/química , Lagos/microbiología , Oxidación-Reducción , Filogenia , Análisis de Secuencia de ADN
16.
Res Microbiol ; 157(7): 693-9, 2006 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16815686

RESUMEN

Ectoine and hydroxyectoine, produced by Halomonas ssp. and Marinococcus ssp., have been extensively characterized and proposed for biotechnological applications. Large-scale production of ectoine was achieved by implementing the so-called "milking process" by Bitop (Witten, Germany) and commercializing compatible solutes as stabilizers for biological systems. However, there is a continuing interest in optimization of the production process for hydroxyectoine alone, as the latter was shown to have greater stabilization capacity. Recently, Marinococcus strain M52 was selected for its ability to convert most ectoine into hydroxyectoine during a prolonged stationary phase. This study reports on the correlation between growth conditions and hydroxyectoine production in Marinococcus M52 cultivation. We demonstrated that a dissolved oxygen content higher than 10% during cultivation leads to more rapid accumulation of hydroxyectoine than of ectoine (with hydroxyectoine up to 1.6 g l-1). In addition, we employed a microfiltration bioprocess to improve biomass and yield of products (reaching 3.6 g l-1 of hydroxyectoine). Finally, we developed a novel extraction method based on osmotic down-shock coupled with thermal permeabilization to recover the desired products from the biomass.


Asunto(s)
Aminoácidos Diaminos/biosíntesis , Biotecnología/métodos , Cocos Grampositivos/crecimiento & desarrollo , Oxígeno/farmacología , Aminoácidos Diaminos/metabolismo , Biomasa , Reactores Biológicos , Biotecnología/instrumentación , Filtración , Cocos Grampositivos/metabolismo
18.
FEMS Microbiol Lett ; 243(1): 181-7, 2005 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-15668017

RESUMEN

Salt adaptation in chemolithotrophic alkaliphilic sulfur-oxidizing strains belonging to genera Thioalkalimicrobium and Thioalkalivibrio has been studied by determination of salt-dependent changes in fatty acid and compatible solute composition. In both alkaliphilic groups, represented by the low salt-tolerant Thioalkalimicrobium aerophilum strain AL 3T and the extremely salt-tolerant Thioalkalivibrio versutus strain ALJ 15, unsaturated fatty acids predominate over saturated fatty acids. In strain AL 3T, C18:1, C16:0 and C16:1 were the dominant fatty acids. In strain ALJ 15, the concentrations of C18:1 and C19cyclo were salt-regulated in an inverse proportional relationship, suggesting the stimulation of cyclopropyl-synthetase activity. Squalene has been found in substantial amounts only in strain ALJ 15. Ectoine and glycine betaine were found to be the main osmolytes in Thioalkalimicrobium aerophilum and Thioalkalivibrio versutus, respectively. The production of ectoine and glycine betaine was positively correlated with the salt concentration in the growth medium. A novel type of membrane-bound yellow pigments was uniformly detected in the extremely salt-tolerant strains of Thioalkalivibrio with a backbone consisting of C15-polyene, whose specific concentration correlated with increasing salinity of the growth medium. The results suggest that the mechanisms of haloalkaliphilic adaptation in Thioalkalimicrobium sp. and Thioalkalivibrio sp. involve the production of cyclopropane fatty acids, organic compatible solutes and, possibly specific pigments.


Asunto(s)
Aminoácidos Diaminos/análisis , Ácidos Grasos/análisis , Agua Dulce/microbiología , Gammaproteobacteria/química , Pigmentos Biológicos/análisis , Azufre/metabolismo , Agua Dulce/química , Gammaproteobacteria/clasificación , Gammaproteobacteria/metabolismo , Gammaproteobacteria/fisiología , Concentración de Iones de Hidrógeno , Oxidación-Reducción , Pigmentos Biológicos/química , Cloruro de Sodio/farmacología
19.
Front Microbiol ; 5: 150, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24772110

RESUMEN

We were able to demonstrate that hydroxyectoine, in contrast to ectoine, is a good glass-forming compound. Fourier transform infrared and spin label electron spin resonance studies of dry ectoine and hydroxyectoine have shown that the superior glass-forming properties of hydroxyectoine result from stronger intermolecular H-bonds with the OH group of hydroxyectoine. Spin probe experiments have also shown that better molecular immobilization in dry hydroxyectoine provides better redox stability of the molecules embedded in this dry matrix. With a glass transition temperature of 87°C (vs. 47°C for ectoine) hydroxyectoine displays remarkable desiccation protection properties, on a par with sucrose and trehalose. This explains its accumulation in response to increased salinity and elevated temperature by halophiles such as Halomonas elongata and its successful application in ``anhydrobiotic engineering'' of both enzymes and whole cells.

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