Patient classification as an outlier detection problem: an application of the One-Class Support Vector Machine.

Pattern recognition approaches, such as the Support Vector Machine (SVM), have been successfully used to classify groups of individuals based on their patterns of brain activity or structure. However these approaches focus on finding group differences and are not applicable to situations where one is interested in accessing deviations from a specific class or population. In the present work we propose an application of the one-class SVM (OC-SVM) to investigate if patterns of fMRI response to sad facial expressions in depressed patients would be classified as outliers in relation to patterns of healthy control subjects. We defined features based on whole brain voxels and anatomical regions. In both cases we found a significant correlation between the OC-SVM predictions and the patients' Hamilton Rating Scale for Depression (HRSD), i.e. the more depressed the patients were the more of an outlier they were. In addition the OC-SVM split the patient groups into two subgroups whose membership was associated with future response to treatment. When applied to region-based features the OC-SVM classified 52% of patients as outliers. However among the patients classified as outliers 70% did not respond to treatment and among those classified as non-outliers 89% responded to treatment. In addition 89% of the healthy controls were classified as non-outliers.

Correlation-based multivariate analysis of genetic influence on brain volume.

Considerable research effort has focused on achieving a better understanding of the genetic correlates of individual differences in volumetric and morphological brain measures. The importance of these efforts is underlined by evidence suggesting that brain changes in a number of neuropsychiatric disorders are at least partly genetic in origin. The currently used methods to study these relationships are mostly based on single-genotype univariate analysis techniques. These methods are limited as multiple genes are likely to interact with each other in their influences on brain structure and function. In this paper we present a feasibility study where we show that by using kernel correlation analysis, with a new genotypes representation, it is possible to analyse the relative associations of several genetic polymorphisms with brain structure. The implementation of the method is demonstrated on genetic and structural magnetic resonance imaging (MRI) data acquired from a group of 16 healthy subjects by showing the multivariate genetic influence on grey and white matter.

Utilization of temporal information for intracranial pressure development trend forecasting in traumatic brain injury.

Objective. Our primary objective is to demonstrate and statistically justify that forecasting models that utilize temporal information of the historical readings of ICP and related parameters are superior, in terms of performance, compared with models that do not make use of temporal information.

Unsupervised analysis of fMRI data using kernel canonical correlation.

We introduce a new unsupervised fMRI analysis method based on kernel canonical correlation analysis which differs from the class of supervised learning methods (e.g., the support vector machine) that are increasingly being employed in fMRI data analysis. Whereas SVM associates properties of the imaging data with simple specific categorical labels (e.g., -1, 1 indicating experimental conditions 1 and 2), KCCA replaces these simple labels with a label vector for each stimulus containing details of the features of that stimulus. We have compared KCCA and SVM analyses of an fMRI data set involving responses to emotionally salient stimuli. This involved first training the algorithm (SVM, KCCA) on a subset of fMRI data and the corresponding labels/label vectors (of pleasant and unpleasant), then testing the algorithms on data withheld from the original training phase. The classification accuracies of SVM and KCCA proved to be very similar. However, the most important result arising form this study is the KCCA is able to extract some regions that SVM also identifies as the most important in task discrimination and these are located manly in the visual cortex. The results of the KCCA were achieved blind to the categorical task labels. Instead, the stimulus category is effectively derived from the vector of image features.

Canonical correlation analysis: an overview with application to learning methods.

We present a general method using kernel canonical correlation analysis to learn a semantic representation to web images and their associated text. The semantic space provides a common representation and enables a comparison between the text and images. In the experiments, we look at two approaches of retrieving images based on only their content from a text query. We compare orthogonalization approaches against a standard cross-representation retrieval technique known as the generalized vector space model.