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1.
Eur J Oral Sci ; 130(2): e12858, 2022 04.
Artículo en Inglés | MEDLINE | ID: mdl-35218587

RESUMEN

In general, saliva is used for microbiota analysis in longitudinal studies, and several collection methods are being used. Using a robust sample collection procedure is important, as it may influence salivary composition. This study explored the comparability of the microbiota of swabbed and spit saliva. Twenty-two females participated in this cross-sectional study. The bacterial composition of the three saliva samples (swab collected by the participant (SW-P), swab collected by the researcher (SW-R), and spit (SP) was assessed by 16S rRNA gene amplicon sequencing. The bacterial composition of the swabbed and the spit saliva was significantly different irrespective of the operator, and Shannon diversity was significantly higher in spit saliva than in SW-P and SW-R. The salivary microbiota of spit and swabbed adult saliva differs significantly. Research on microbial composition therefore requires collection of similar saliva sample types in all study participants.


Asunto(s)
Microbiota , Saliva , Adulto , Bacterias , Estudios Transversales , Femenino , Humanos , ARN Ribosómico 16S/genética
2.
J Nutr ; 151(3): 605-614, 2021 03 11.
Artículo en Inglés | MEDLINE | ID: mdl-33561272

RESUMEN

BACKGROUND: Age-related declines in taste and smell function are widely assumed to contribute to the decrease in appetite and the development of undernutrition in older adults. OBJECTIVES: Here we aim to assess the associations of both taste and smell function with several nutrition-related outcomes in a single study, with poor appetite and undernutrition as primary outcomes. METHODS: This is a cross-sectional cohort study of 359 community-dwelling Dutch older adults, aged 65-93 y. Taste function was measured for all 5 basic tastes. Smell function was assessed with 3 tests: for odor identification, discrimination, and threshold. Self-reported taste and smell, appetite, energy (kcal/d) and macronutrient (% energy) intake, and covariates were assessed with extensive questionnaires. Dietary quality was calculated using the Dutch Healthy Diet index 2015, Alternative Healthy Eating Index 2010, and Mediterranean Diet Score. Body measurements included body weight (current and 2 y prior), height, and body impedance analysis. Data were analyzed via multiple logistic and linear regression. RESULTS: Of our sample, 9.2% had poor taste and 17.0% poor smell, 6.1% had poor appetite, and 21.4% were undernourished. Self-reported poor taste (OR: 8.44; 95% CI: 1.56, 45.56; P = 0.013) was associated with poor appetite, but no other taste or smell score was associated with either poor appetite or undernutrition. Some associations were found of individual taste and smell scores with macronutrient intake and dietary quality. Self-reported poor taste and smell were both consistently associated with poorer dietary quality. CONCLUSIONS: In community-dwelling older adults, specific taste and smell impairments may have diverse consequences for appetite, food intake, or dietary quality. However, this does not necessarily result in undernutrition. The consistent associations of self-reported poor taste and smell with poor dietary quality do underline the usefulness of this information when screening for nutritional risk.


Asunto(s)
Apetito , Dieta/normas , Ingestión de Alimentos , Desnutrición , Olfato/fisiología , Gusto/fisiología , Anciano , Anciano de 80 o más Años , Estudios Transversales , Conducta Alimentaria , Femenino , Humanos , Masculino
3.
Am J Respir Crit Care Med ; 200(6): 760-770, 2019 09 15.
Artículo en Inglés | MEDLINE | ID: mdl-30883192

RESUMEN

Rationale: The respiratory microbiota is increasingly being appreciated as an important mediator in the susceptibility to childhood respiratory tract infections (RTIs). Pathogens are presumed to originate from the nasopharyngeal ecosystem.Objectives: To investigate the association between early life respiratory microbiota and development of childhood RTIs.Methods: In a prospective birth cohort (Microbiome Utrecht Infant Study: MUIS), we characterized the oral microbiota longitudinally from birth until 6 months of age of 112 infants (nine regular samples/subject) and compared them with nasopharyngeal microbiota using 16S-rRNA-based sequencing. We also characterized oral and nasopharynx samples during RTI episodes in the first half year of life.Measurements and Main Results: Oral microbiota were driven mostly by feeding type, followed by age, mode of delivery, and season of sampling. In contrast to our previously published associations between nasopharyngeal microbiota development and susceptibility to RTIs, oral microbiota development was not directly associated with susceptibility to RTI development. However, we did observe an influx of oral taxa, such as Neisseria lactamica, Streptococcus, Prevotella nanceiensis, Fusobacterium, and Janthinobacterium lividum, in the nasopharyngeal microbiota before and during RTIs, which was accompanied by reduced presence and abundance of Corynebacterium, Dolosigranulum, and Moraxella spp. Moreover, this phenomenon was accompanied by reduced niche differentiation indicating loss of ecological topography preceding confirmed RTIs. This loss of ecological topography was further augmented by start of daycare, and linked to consecutive development of symptomatic infections.Conclusions: Together, our results link the loss of topography to subsequent development of RTI episodes. This may lead to new insights for prevention of RTIs and antibiotic use in childhood.


Asunto(s)
Microbiota , Boca/microbiología , Nasofaringe/microbiología , Infecciones del Sistema Respiratorio/microbiología , Infecciones del Sistema Respiratorio/fisiopatología , Femenino , Humanos , Lactante , Recién Nacido , Estudios Longitudinales , Masculino , Estudios Prospectivos
4.
BMC Genomics ; 20(1): 65, 2019 Jan 19.
Artículo en Inglés | MEDLINE | ID: mdl-30660184

RESUMEN

BACKGROUND: Antibiotic therapy is commonly used in animal agriculture. Antibiotics excreted by the animals can contaminate farming environments, resulting in long term exposure of animals to sub-inhibitory levels of antibiotics. Little is known on the effect of this exposure on antibiotic resistance. In this study, we aimed to investigate the long term effects of sub-inhibitory levels of antibiotics on the gut microbiota composition and resistome of veal calves in vivo. Forty-two veal calves were randomly assigned to three groups. The first group (OTC-high) received therapeutic oral dosages of 1 g oxytetracycline (OTC), twice per day, during 5 days. The second group (OTC-low) received an oral dose of OTC of 100-200 µg per day during 7 weeks, mimicking animal exposure to environmental contamination. The third group (CTR) did not receive OTC, serving as unexposed control. Antibiotic residue levels were determined over time. The temporal effects on the gut microbiota and antibiotic resistance gene abundance was analysed by metagenomic sequencing. RESULTS: In the therapeutic group, OTC levels exceeded MIC values. The low group remained at sub-inhibitory levels. The control group did not reach any significant OTC levels. 16S rRNA gene-based analysis revealed significant changes in the calf gut microbiota. Time-related changes accounted for most of the variation in the sequence data. Therapeutic application of OTC had transient effect, significantly impacting gut microbiota composition between day 0 and day 2. By metagenomic sequence analysis we identified six antibiotic resistance genes representing three gene classes (tetM, floR and mel) that differed in relative abundance between any of the intervention groups and the control. qPCR was used to validate observations made by metagenomic sequencing, revealing a peak of tetM abundance at day 28-35 in the OTC-high group. No increase in resistance genes abundance was seen in the OTC-low group. CONCLUSIONS: Under the conditions tested, sub-therapeutic administration of OTC did not result in increased tetM resistance levels as observed in the therapeutic group.


Asunto(s)
Farmacorresistencia Microbiana/efectos de los fármacos , Microbioma Gastrointestinal/efectos de los fármacos , Metagenómica/métodos , Oxitetraciclina/farmacología , Animales , Antibacterianos/farmacología , Bovinos , Relación Dosis-Respuesta a Droga , Farmacorresistencia Microbiana/genética , Heces/microbiología , Microbioma Gastrointestinal/genética , Genes Bacterianos/genética , Pruebas de Sensibilidad Microbiana/métodos , ARN Ribosómico 16S/química , ARN Ribosómico 16S/genética , Distribución Aleatoria , Análisis de Secuencia de ADN
5.
Am J Respir Crit Care Med ; 196(12): 1582-1590, 2017 12 15.
Artículo en Inglés | MEDLINE | ID: mdl-28665684

RESUMEN

RATIONALE: Perinatal and postnatal influences are presumed important drivers of the early-life respiratory microbiota composition. We hypothesized that the respiratory microbiota composition and development in infancy is affecting microbiota stability and thereby resistance against respiratory tract infections (RTIs) over time. OBJECTIVES: To investigate common environmental drivers, including birth mode, feeding type, antibiotic exposure, and crowding conditions, in relation to respiratory tract microbiota maturation and stability, and consecutive risk of RTIs over the first year of life. METHODS: In a prospectively followed cohort of 112 infants, we characterized the nasopharyngeal microbiota longitudinally from birth on (11 consecutive sample moments and the maximum three RTI samples per subject; in total, n = 1,121 samples) by 16S-rRNA gene amplicon sequencing. MEASUREMENTS AND MAIN RESULTS: Using a microbiota-based machine-learning algorithm, we found that children experiencing a higher number of RTIs in the first year of life already demonstrate an aberrant microbial developmental trajectory from the first month of life on as compared with the reference group (0-2 RTIs/yr). The altered microbiota maturation process coincided with decreased microbial community stability, prolonged reduction of Corynebacterium and Dolosigranulum, enrichment of Moraxella very early in life, followed by later enrichment of Neisseria and Prevotella spp. Independent drivers of these aberrant developmental trajectories of respiratory microbiota members were mode of delivery, infant feeding, crowding, and recent antibiotic use. CONCLUSIONS: Our results suggest that environmental drivers impact microbiota development and, consequently, resistance against development of RTIs. This supports the idea that microbiota form the mediator between early-life environmental risk factors for and susceptibility to RTIs over the first year of life.


Asunto(s)
Ambiente , Microbiota/fisiología , Nasofaringe/microbiología , Infecciones del Sistema Respiratorio/epidemiología , Antibacterianos/uso terapéutico , Lactancia Materna/estadística & datos numéricos , Niño , Estudios de Cohortes , Parto Obstétrico/estadística & datos numéricos , Femenino , Humanos , Lactante , Alimentos Infantiles/estadística & datos numéricos , Estudios Longitudinales , Masculino , Países Bajos/epidemiología , Estudios Prospectivos
6.
Microb Ecol ; 72(2): 479-92, 2016 08.
Artículo en Inglés | MEDLINE | ID: mdl-27155967

RESUMEN

Nitrate is emerging as a possible health benefactor. Especially the microbial conversion of nitrate to nitrite in the oral cavity and the subsequent conversion to nitric oxide in the stomach are of interest in this regard. Yet, how nitrate influences the composition and biochemistry of the oral ecosystem is not fully understood. To investigate the effect of nitrate on oral ecology, we performed a 4-week experiment using the multiplaque artificial mouth (MAM) biofilm model. This model was inoculated with stimulated saliva of two healthy donors. Half of the microcosms (n = 4) received a constant supply of nitrate, while the other half functioned as control (n = 4). Additionally, all microcosms received a nitrate and sucrose pulse, each week, on separate days to measure nitrate reduction and acid formation. The bacterial composition of the microcosms was determined by 16S rDNA sequencing. The origin of the saliva (i.e., donor) showed to be the strongest determinant for the development of the microcosms. The supplementation of nitrate was related to a relatively high abundance of Neisseria in the microcosms of both donors, while Veillonella was highly abundant in the nitrate-supplemented microcosms of only one of the donors. The lactate concentration after sucrose addition was similarly high in all microcosms, irrespective of treatment or donor, while the concentration of butyrate was lower after nitrate addition in the nitrate-receiving microcosms. In conclusion, nitrate influences the composition and biochemistry of oral microcosms, although the result is strongly dependent on the inoculum.


Asunto(s)
Bacterias/clasificación , Ácidos Grasos Volátiles/biosíntesis , Nitratos/análisis , Saliva/microbiología , Adulto , Bacterias/aislamiento & purificación , Bacterias/metabolismo , Biomasa , Butiratos/análisis , Femenino , Genes Bacterianos , Genómica , Humanos , Masculino , Neisseria/genética , Neisseria/aislamiento & purificación , Neisseria/metabolismo , Nitritos/análisis , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Sacarosa/análisis , Veillonella/genética , Veillonella/aislamiento & purificación , Veillonella/metabolismo , Adulto Joven
7.
Periodontol 2000 ; 70(1): 184-95, 2016 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-26662490

RESUMEN

There has been immense interest in the uses of saliva in the diagnosis of systemic disease over the past decade and longer because it is recognized that saliva possesses great potential as a diagnostic fluid. In spite of this, the usefulness of saliva in studies of the epidemiology of human disease has still to be properly evaluated. This review describes the UK Biobank project and explores the scope to use this and other such cohort studies to gain important insights into the epidemiological aspects of systemic disease. The Biobank holds around 85,000 well-characterized saliva samples, together with blood and urine samples, the results of a battery of physiological tests, a full medical history and a detailed description of the subject's lifestyle. This repository is a resource for insightful and highly powered oral and dental research.


Asunto(s)
Métodos Epidemiológicos , Saliva/química , Proteínas y Péptidos Salivales/análisis , Bancos de Muestras Biológicas , Biomarcadores/análisis , Estudios de Cohortes , Diagnóstico Bucal , Humanos , Saliva/metabolismo , Reino Unido/epidemiología
8.
Methods ; 83: 28-35, 2015 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-25842007

RESUMEN

We use Human Microbiome Project (HMP) cohort (Peterson et al., 2009) to infer personalized oral microbial networks of healthy individuals. To determine clustering of individuals with similar microbial profiles, co-regularized spectral clustering algorithm is applied to the dataset. For each cluster we discovered, we compute co-occurrence relationships among the microbial species that determine microbial network per cluster of individuals. The results of our study suggest that there are several differences in microbial interactions on personalized network level in healthy oral samples acquired from various niches. Based on the results of co-regularized spectral clustering we discover two groups of individuals with different topology of their microbial interaction network. The results of microbial network inference suggest that niche-wise interactions are different in these two groups. Our study shows that healthy individuals have different microbial clusters according to their oral microbiota. Such personalized microbial networks open a better understanding of the microbial ecology of healthy oral cavities and new possibilities for future targeted medication. The scripts written in scientific Python and in Matlab, which were used for network visualization, are provided for download on the website http://learning-machines.com/.


Asunto(s)
Análisis por Conglomerados , Biología Computacional/métodos , Consorcios Microbianos , Microbiota/genética , Algoritmos , Humanos
9.
Clin Infect Dis ; 60 Suppl 2: S77-84, 2015 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-25922405

RESUMEN

The purpose of the study was to assess the effect of ciprofloxacin (500 mg twice daily for 10 days) or clindamycin (150 mg 4 times daily for 10 days) on the fecal microbiota of healthy humans for a period of 1 year as compared to placebo. Two different methods, culture and microbiome analysis, were used. Fecal samples were collected for analyses at 6 time-points. The interval needed for the normal microbiota to be normalized after ciprofloxacin or clindamycin treatment differed for various bacterial species. It took 1-12 months to normalize the human microbiota after antibiotic administration, with the most pronounced effect on day 11. Exposure to ciprofloxacin or clindamycin had a strong effect on the diversity of the microbiome, and changes in microbial composition were observed until the 12th month, with the most pronounced microbial shift at month 1. No Clostridium difficile colonization or C. difficile infections were reported. Based on the pyrosequencing results, it appears that clindamycin has more impact than ciprofloxacin on the intestinal microbiota.


Asunto(s)
Antibacterianos/farmacología , Bacterias/crecimiento & desarrollo , Ciprofloxacina/farmacología , Clindamicina/farmacología , Heces/microbiología , Microbioma Gastrointestinal/efectos de los fármacos , Tracto Gastrointestinal/microbiología , Adolescente , Adulto , Antibacterianos/administración & dosificación , Bacterias/clasificación , Bacterias/aislamiento & purificación , Carga Bacteriana , Ciprofloxacina/administración & dosificación , Clindamicina/administración & dosificación , Clostridioides difficile/aislamiento & purificación , Clostridioides difficile/patogenicidad , Recuento de Colonia Microbiana , Femenino , Voluntarios Sanos , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Masculino , Persona de Mediana Edad , Placebos , ARN Ribosómico 16S , Factores de Tiempo , Adulto Joven
10.
Microb Ecol ; 69(2): 422-33, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25433583

RESUMEN

Dysbiosis induced by low pH in the oral ecosystem can lead to caries, a prevalent bacterial disease in humans. The amino acid arginine is one of the pH-elevating agents in the oral cavity. To obtain insights into the effect of arginine on oral microbial ecology, a multi-plaque "artificial mouth" (MAM) biofilm model was inoculated with saliva from a healthy volunteer and microcosms were grown for 4 weeks with 1.6 % (w/v) arginine supplement (Arginine) or without (Control), samples were taken at several time-points. A cariogenic environment was mimicked by sucrose pulsing. The bacterial composition was determined by 16S rRNA gene amplicon sequencing, the presence and amount of Candida and arginine deiminase system genes arcA and sagP by qPCR. Additionally, ammonium and short-chain fatty acid concentrations were determined. The Arginine microcosms were dominated by Streptococcus, Veillonella, and Neisseria and remained stable in time, while the composition of the Control microcosms diverged significantly in time, partially due to the presence of Megasphaera. The percentage of Candida increased 100-fold in the Control microcosms compared to the Arginine microcosms. The pH-raising effect of arginine was confirmed by the pH and ammonium results. The abundances of sagP and arcA were highest in the Arginine microcosms, while the concentration of butyrate was higher in the Control microcosms. We demonstrate that supplementation with arginine serves a health-promoting function; it enhances microcosm resilience toward acidification and suppresses outgrowth of the opportunistic pathogen Candida. Arginine facilitates stability of oral microbial communities and prevents them from becoming cariogenic.


Asunto(s)
Arginina/farmacología , Bacterias/efectos de los fármacos , Candida/crecimiento & desarrollo , Boca/microbiología , Bacterias/crecimiento & desarrollo , Bacterias/aislamiento & purificación , Biopelículas/efectos de los fármacos , Biopelículas/crecimiento & desarrollo , Candida/efectos de los fármacos , ADN Bacteriano/genética , Caries Dental/tratamiento farmacológico , Caries Dental/microbiología , Genes Bacterianos , Humanos , Concentración de Iones de Hidrógeno , Hidrolasas/genética , Hidrolasas/metabolismo , Neisseria/efectos de los fármacos , Neisseria/crecimiento & desarrollo , ARN Ribosómico 16S/genética , Saliva/microbiología , Análisis de Secuencia de ADN , Streptococcus/efectos de los fármacos , Streptococcus/crecimiento & desarrollo , Veillonella/efectos de los fármacos , Veillonella/crecimiento & desarrollo
11.
J Clin Periodontol ; 42(10): 908-13, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26212602

RESUMEN

AIM: To evaluate the correlation between bleeding on marginal probing (BOMP) and bleeding on pocket probing (BOPP), and the correlation of both bleeding indices with plaque. MATERIALS AND METHODS: This cross-sectional study screened 336 participants, from which 268 were eligible for examination and analysis. Bleeding and plaque indices were assessed by single examiners, at six sites per tooth. RESULTS: The mean percentage of sites per individual with bleeding on marginal probing, bleeding on pocket probing and dental plaque were 19.9%, 51.2% and 32.2% respectively. In the quadrants where the margin was probed before the pocket, a 4.6 percentage points higher bleeding tendency with BOPP was observed (p < 0.05). At a site level, the correlation coefficients of plaque and bleeding on marginal probing and bleeding on pocket probing were 0.19 and 0.20 respectively. Both bleeding indices were also shown to be correlated (r = 0.89, fixed effect model). CONCLUSION: The prevalence of bleeding upon probing is influenced by the scoring method that is used for the diagnosis. Probing the bottom of the pocket results in significantly more bleeding than running a probe along the margin.


Asunto(s)
Hemorragia , Estudios Transversales , Placa Dental/diagnóstico , Índice de Placa Dental , Femenino , Gingivitis/diagnóstico , Humanos , Masculino , Índice Periodontal , Adulto Joven
12.
Eur J Oral Sci ; 123(3): 149-57, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-25809904

RESUMEN

A cross-sectional observational study was conducted to evaluate interindividual biochemical variation in unstimulated whole saliva in a population of 268 systemically healthy young students, 18-30 yr of age, with no apparent caries lesions or periodontal disease. Salivary flow rate, protein content, pH, buffering capacity, mucins MUC5B and MUC7, albumin, secretory IgA, cystatin S, lactoferrin, chitinase, amylase, lysozyme, and proteases were measured using ELISAs and enzymatic activity assays. Significant differences were found between male and female subjects. Salivary pH, buffering capacity, protein content, MUC5B, secretory IgA, and chitinase activity were all lower in female subjects compared with male subjects, whereas MUC7 and lysozyme activity were higher in female subjects. There was no significant difference between sexes in salivary flow rate, albumin, cystatin S, amylase, and protease activity. Principal component analysis (PCA) and spectral clustering (SC) were used to assess intervariable relationships within the data set and to identify subgroups. Spectral clustering identified two clusters of participants, which were subsequently described. This study provides a comprehensive overview of the distribution and inter-relations of a set of important salivary biochemical variables in a systemically healthy young adult population, free of apparent caries lesions and periodontal disease. It highlights significant gender differences in salivary biochemistry.


Asunto(s)
Saliva/química , Adolescente , Adulto , Albúminas/análisis , Amilasas/análisis , Tampones (Química) , Quitinasas/análisis , Análisis por Conglomerados , Estudios Transversales , Femenino , Humanos , Concentración de Iones de Hidrógeno , Inmunoglobulina A Secretora/análisis , Lactoferrina/análisis , Masculino , Mucina 5B/análisis , Mucinas/análisis , Muramidasa/análisis , Péptido Hidrolasas/análisis , Análisis de Componente Principal , Saliva/metabolismo , Saliva/fisiología , Cistatinas Salivales/análisis , Proteínas y Péptidos Salivales/análisis , Tasa de Secreción/fisiología , Factores Sexuales , Adulto Joven
13.
Biofouling ; 31(6): 503-10, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26212722

RESUMEN

Commensal oral biofilms, defined by the absence of pathology-related phenotypes, are ubiquitously present. In contrast to pathological biofilms commensal biofilms are rarely studied. Here, the effect of the initial inoculum and subsequent growth conditions on in vitro oral biofilms was studied. Biofilms were inoculated with saliva and grown anaerobically for up to 21 days in McBain medium with or without fetal calf serum (FCS) or sucrose. Pathology-related phenotypes were quantified and the community composition was determined. Biofilms inoculated with pooled saliva or individual inocula were similar. Denaturing gradient gel electrophoresis (DGGE) analysis allowed differentiation of biofilms grown with sucrose, but not with FCS. Lactate production by biofilms was significantly increased by sucrose and protease activity by FCS. McBain grown biofilms showed low activity for both phenotypes. Three clinically relevant in vitro biofilm models were developed and could be differentiated based on pathology-related phenotypes but not DGGE analysis. These models allow analysis of health-to-disease shifts and the effectiveness of prevention measures.


Asunto(s)
Biopelículas/crecimiento & desarrollo , Medios de Cultivo/química , Boca/microbiología , Simbiosis/fisiología , Anaerobiosis , Animales , Bovinos , Electroforesis en Gel de Gradiente Desnaturalizante , Técnicas In Vitro , Ácido Láctico/biosíntesis , Saliva/química , Suero/química , Sacarosa/química
14.
Am J Respir Crit Care Med ; 190(3): 298-308, 2014 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-24921688

RESUMEN

RATIONALE: Breastfeeding elicits significant protection against respiratory tract infections in infancy. Modulation of respiratory microbiota might be part of the natural mechanisms of protection against respiratory diseases induced by breastfeeding. OBJECTIVES: To study the association between breastfeeding and nasopharyngeal microbial communities, including all cultivable and noncultivable bacteria. METHODS: In this observational study, we analyzed the microbiota of infants that had received exclusive breastfeeding (n = 101) and exclusive formula feeding (n = 101) at age 6 weeks and 6 months by 16S-based GS-FLX-titanium-pyrosequencing. MEASUREMENTS AND MAIN RESULTS: At 6 weeks of age the overall bacterial community composition was significantly different between breastfed and formula-fed children (nonmetric multidimensional scaling, P = 0.001). Breastfed children showed increased presence and abundance of the lactic acid bacterium Dolosigranulum (relative effect size [RES], 2.61; P = 0.005) and Corynebacterium (RES, 1.98; P = 0.039) and decreased abundance of Staphylococcus (RES, 0.48; P 0.03) and anaerobic bacteria, such as Prevotella (RES, 0.25; P < 0.001) and Veillonella (RES, 0.33; P < 0.001). Predominance (>50% of the microbial profile) of Corynebacterium and Dolosigranulum was observed in 45 (44.6%) breastfed infants compared with 19 (18.8%) formula-fed infants (relative risk, 2.37; P = 0.006). Dolosigranulum abundance was inversely associated with consecutive symptoms of wheezing and number of mild respiratory tract infections experienced. At 6 months of age associations between breastfeeding and nasopharyngeal microbiota composition had disappeared. CONCLUSIONS: Our data suggest a strong association between breastfeeding and microbial community composition in the upper respiratory tract of 6-week-old infants. Observed differences in microbial community profile may contribute to the protective effect of breastfeeding on respiratory infections and wheezing in early infancy. Clinical trial registered with www.clinicaltrials.gov (NCT 00189020).


Asunto(s)
Alimentación con Biberón , Lactancia Materna , Leche Humana/inmunología , Nasofaringe/microbiología , Infecciones del Sistema Respiratorio/prevención & control , Femenino , Humanos , Lactante , Fórmulas Infantiles , Masculino , Microbiota/inmunología , Leche Humana/microbiología , Nasofaringe/inmunología , Países Bajos , Infecciones del Sistema Respiratorio/inmunología , Infecciones del Sistema Respiratorio/microbiología
15.
Am J Respir Crit Care Med ; 190(11): 1283-92, 2014 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-25329446

RESUMEN

RATIONALE: Many bacterial pathogens causing respiratory infections in children are common residents of the respiratory tract. Insight into bacterial colonization patterns and microbiota stability at a young age might elucidate healthy or susceptible conditions for development of respiratory disease. OBJECTIVES: To study bacterial succession of the respiratory microbiota in the first 2 years of life and its relation to respiratory health characteristics. METHODS: Upper respiratory microbiota profiles of 60 healthy children at the ages of 1.5, 6, 12, and 24 months were characterized by 16S-based pyrosequencing. We determined consecutive microbiota profiles by machine-learning algorithms and validated the findings cross-sectionally in an additional cohort of 140 children per age group. MEASUREMENTS AND MAIN RESULTS: Overall, we identified eight distinct microbiota profiles in the upper respiratory tract of healthy infants. Profiles could already be identified at 1.5 months of age and were associated with microbiota stability and change over the first 2 years of life. More stable patterns were marked by early presence and high abundance of Moraxella and Corynebacterium/Dolosigranulum and were positively associated with breastfeeding in the first period of life and with lower rates of parental-reported respiratory infections in the consecutive periods. Less stable profiles were marked by high abundance of Haemophilus or Streptococcus. CONCLUSIONS: These findings provide novel insights into microbial succession in the respiratory tract in infancy and link early-life profiles to microbiota stability and respiratory health characteristics. New prospective studies should elucidate potential implications of our findings for early diagnosis and prevention of respiratory infections. Clinical trial registered with www.clinicaltrials.gov (NCT00189020).


Asunto(s)
Bacterias/aislamiento & purificación , Microbiota/fisiología , Nasofaringe/microbiología , Infecciones del Sistema Respiratorio/microbiología , Distribución por Edad , Antibacterianos , Lactancia Materna , Broncodilatadores/uso terapéutico , Preescolar , Corynebacterium/aislamiento & purificación , Corynebacterium/fisiología , Susceptibilidad a Enfermedades , Humanos , Lactante , Moraxella/aislamiento & purificación , Moraxella/fisiología , Países Bajos , Infecciones del Sistema Respiratorio/tratamiento farmacológico
16.
Emerg Infect Dis ; 20(2): 201-10, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24447437

RESUMEN

Seven-valent pneumococcal conjugate vaccine (PCV-7) is effective against vaccine serotype disease and carriage. Nevertheless, shifts in colonization and disease toward nonvaccine serotypes and other potential pathogens have been described. To understand the extent of these shifts, we analyzed nasopharyngeal microbial profiles of 97 PCV-7-vaccinated infants and 103 control infants participating in a randomized controlled trial in the Netherlands. PCV-7 immunization resulted in a temporary shift in microbial community composition and increased bacterial diversity. Immunization also resulted in decreased presence of the pneumococcal vaccine serotype and an increase in the relative abundance and presence of nonpneumococcal streptococci and anaerobic bacteria. Furthermore, the abundance of Haemophilus and Staphylococcus bacteria in vaccinees was increased over that in controls. This study illustrates the much broader effect of vaccination with PCV-7 on the microbial community than currently assumed, and highlights the need for careful monitoring when implementing vaccines directed against common colonizers.


Asunto(s)
Microbiota/efectos de los fármacos , Nasofaringe/microbiología , Infecciones Neumocócicas/prevención & control , Vacunas Neumococicas/inmunología , ARN Ribosómico 16S/clasificación , Streptococcus pneumoniae/inmunología , Vacunación , Portador Sano , Niño , Preescolar , Femenino , Haemophilus/fisiología , Humanos , Lactante , Masculino , Microbiota/inmunología , Nasofaringe/efectos de los fármacos , Nasofaringe/inmunología , Países Bajos , Filogenia , Infecciones Neumocócicas/inmunología , Infecciones Neumocócicas/microbiología , Vacunas Neumococicas/administración & dosificación , ARN Ribosómico 16S/genética , Serotipificación , Staphylococcus/fisiología , Streptococcus pneumoniae/efectos de los fármacos , Vacunas de Subunidad
17.
Compend Contin Educ Dent ; 45(Suppl 1): 18-19, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38781413

RESUMEN

The Philips® Sonicare® Power Flosser (PSPF) is highly effective in reducing gum disease. Next to effective supragingival cleaning, this may be partially driven by subgingival cleaning. This in vitro study aimed to assess the effectiveness of the PSPF in removing biofilm from a model periodontal pocket up to 6 mm deep and to investigate the taxonomic composition of biofilm regrown after use of the PSPF.


Asunto(s)
Biopelículas , Dispositivos para el Autocuidado Bucal , Microbiota , Bolsa Periodontal , Humanos , Bolsa Periodontal/microbiología , Técnicas In Vitro
18.
J Oral Microbiol ; 16(1): 2369350, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38919384

RESUMEN

Introduction: The aim of the study was to evaluate the modulating effects of five commonly used sweetener (glucose, inulin, isomaltulose, tagatose, trehalose) containing mouth rinses on the oral microbiome. Methods: A single-centre, double-blind, parallel randomized clinical trial was performed with healthy, 18-55-year-old volunteers (N = 65), who rinsed thrice-daily for two weeks with a 10% solution of one of the allocated sweeteners. Microbiota composition of supragingival dental plaque and the tongue dorsum coating was analysed by 16S RNA gene amplicon sequencing of the V4 hypervariable region (Illumina MiSeq). As secondary outcomes, dental plaque red fluorescence and salivary pH were measured. Results: Dental plaque microbiota changed significantly for two groups: inulin (F = 2.0239, p = 0.0006 PERMANOVA, Aitchison distance) and isomaltulose (F = 0.67, p = 0.0305). For the tongue microbiota, significant changes were observed for isomaltulose (F = 0.8382, p = 0.0452) and trehalose (F = 1.0119, p = 0.0098). In plaque, 13 species changed significantly for the inulin group, while for tongue coating, three species changed for the trehalose group (ALDEx2, p < 0.1). No significant changes were observed for the secondary outcomes. Conclusion: The effects on the oral microbiota were sweetener dependant with the most pronounced effect on plaque microbiota. Inulin exhibited the strongest microbial modulating potential of the sweeteners tested. Further full-scale clinical studies are required.

19.
Nutrients ; 15(21)2023 Oct 27.
Artículo en Inglés | MEDLINE | ID: mdl-37960220

RESUMEN

Nutrition and oral health are closely related, especially in older adults in whom poor nutrition may lead to oral microbial perturbations, exacerbating poor oral health. In a 6-month randomized controlled trial, we evaluated the effects on oral microbiota and on oral health of dietary advice aimed at increasing protein intake to ≥1.2 g/kg adjusted body weight/day (g/kg aBW/d) in community-dwelling older adults with low habitual protein intake (<1.0 g/kg aBW/d). Food intake was measured via 24 h dietary recalls, oral health was measured via questionnaires, and oral microbial composition was assessed via the 16S rRNA sequencing of tongue swabs. Mean baseline protein intake was 0.8 g/kg aBW/day in both groups. In the high protein group (n = 47), participants increased their protein intake to mean 1.2 g/kg aBW/day at the 6-month follow-up. Protein intake in the control group (n = 43) remained at 0.9 g/kg a BW/day. The intervention did not affect self-reported oral health. While it caused moderate shifts in oral microbiota alpha- and beta-diversity measures, abundances of individual bacterial taxa were not affected. In conclusion, our intervention did not affect self-reported oral health within a period of 6 months, nor did it substantially affect the tongue microbiota composition.


Asunto(s)
Microbiota , Salud Bucal , Humanos , Anciano , ARN Ribosómico 16S/genética , Dieta , Consejo
20.
Nutrients ; 15(2)2023 Jan 09.
Artículo en Inglés | MEDLINE | ID: mdl-36678203

RESUMEN

Expert groups argue to raise the recommended daily allowance for protein in older adults from 0.8 to 1.2 g/kg/day to prevent undernutrition. However, protein is thought to increase satiety, possibly through effects on gut microbiota and central appetite regulation. If true, raising daily protein intake may work counterproductively. In a randomized controlled trial, we evaluated the effects of dietary advice aimed at increasing protein intake to 1.2 g/kg adjusted body weight/day (g/kg aBW/day) on appetite and gut microbiota in 90 community-dwelling older adults with habitual protein intake <1.0 g/kg aBW/day (Nintervention = 47, Ncontrol = 43). Food intake was determined by 24-h dietary recalls and gut microbiota by 16S rRNA sequencing. Functional magnetic resonance imaging (fMRI) scans were performed in a subgroup of 48 participants to evaluate central nervous system responses to food-related stimuli. Both groups had mean baseline protein intake of 0.8 ± 0.2 g/kg aBW/day. At 6 months' follow-up this increased to 1.2 ± 0.2 g/kg aBW/day for the intervention group and 0.9 ± 0.2 g/kg aBW/day for the control group. Microbiota composition was not affected, nor were appetite or brain activity in response to food-related stimuli. Increasing protein intake in older adults to 1.2 g/kg aBW/day does not negatively impact the gut microbiota or suppress appetite.


Asunto(s)
Apetito , Microbioma Gastrointestinal , Humanos , Anciano , Vida Independiente , ARN Ribosómico 16S , Dieta
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