Insights into structure and function of the active site of SoxAX cytochromes.

SoxAX cytochromes catalyze the formation of heterodisulfide bonds between inorganic sulfur compounds and a carrier protein, SoxYZ. They contain unusual His/Cys-ligated heme groups with complex spectroscopic signatures. The heme-ligating cysteine has been implicated in SoxAX catalysis, but neither the SoxAX spectroscopic properties nor its catalysis are fully understood at present. We have solved the first crystal structure for a group 2 SoxAX protein (SnSoxAX), where an N-terminal extension of SoxX forms a novel structure that supports dimer formation. Crystal structures of SoxAX with a heme ligand substitution (C236M) uncovered an inherent flexibility of this SoxA heme site, with both bonding distances and relative ligand orientation differing between asymmetric units and the new residue, Met(236), representing an unusual rotamer of methionine. The flexibility of the SnSoxAX(C236M) SoxA heme environment is probably the cause of the four distinct, new EPR signals, including a high spin ferric heme form, that were observed for the enzyme. Despite the removal of the catalytically active cysteine heme ligand and drastic changes in the redox potential of the SoxA heme (WT, -479 mV; C236M, +85 mV), the substituted enzyme was catalytically active in glutathione-based assays although with reduced turnover numbers (WT, 3.7 s(-1); C236M, 2.0 s(-1)). SnSoxAX(C236M) was also active in assays using SoxYZ and thiosulfate as the sulfur substrate, suggesting that Cys(236) aids catalysis but is not crucial for it. The SoxYZ-based SoxAX assay is the first assay for an isolated component of the Sox multienzyme system.

Vibronic effects in Cu(II)-doped Ba2Zn(HCO2)6 x 4 H2O.

The temperature-dependent electron paramagnetic resonance (EPR) spectrum of approximately 1% Cu(II) ions doped into Ba 2Zn(HCO2)6 x 4 H2O was analyzed at the Q-band frequencies over the temperature range 100-350 K to obtain structural information about the local environment. It can be concluded that the host crystal imparts a large orthorhombic strain which mainly corresponds to a tetragonal compression imposed onto the Cu(II)O6 species. This results in a copper center which adopts an orthorhombically distorted elongated geometry with the elongated axis perpendicular to the direction of the tetragonal compression due to the host crystal. There are two possible axes of elongation, and these represent two conformers separated by approximately 320 cm(-1). The thermal population of the higher energy level averages the g values, giving the observed temperature-dependent EPR spectra. The averaging process is between vibronic levels that are localized at two different minima of a single ground-state potential energy surface. These vibronic levels correspond to vibrational levels having different electronic properties. The determination of the host lattice strain parameters from the Cu(II) EPR spectra means that the guest ion is used as a probe of the environment of the Zn(II) site. The structural data derived from the lattice strain parameters are correlated with those from the Ba 2Zn(HCO2)6 x 4 H2O crystal structure.

Effects of mutations in active site heme ligands on the spectroscopic and catalytic properties of SoxAX cytochromes.

By attaching a sulfur substrate to a conserved cysteine of the SoxYZ carrier protein SoxAX cytochromes initiate the reaction cycle of the Sox (sulfur oxidation) multienzyme complex, which is the major pathway for microbial reoxidation of sulfur compounds in the environment. Despite their important role in this process, the reaction mechanism of the SoxAX cytochromes has not been fully elucidated. Here we report the effects of several active site mutations on the spectroscopic and enzymatic properties of the type II SoxAX protein from Starkeya novella, which in addition to two heme groups also contains a Cu redox centre. All substituted proteins contained these redox centres except for His231Ala which was unable to bind Cu(II). Substitution of the SoxA active site heme cysteine ligand with histidine resulted in increased microheterogeneity around the SoxA heme as determined by CW-EPR, while a SnSoxAXC236A substituted protein revealed a completely new, nitrogenous SoxA heme ligand. The same novel ligand was present in SnSoxAXH231A CW-EPR spectra, the first time that a ligand switch of the SoxA heme involving a nearby amino acid has been demonstrated. Kinetically, SnSoxAXC236A and SnSoxAXC236H showed reduced turnover, and in assays containing SoxYZ these mutants retained only ~25% of the wildtype activity. Together, these data indicate that the Cu redox centre can mediate a low level of activity, and that a possible ligand switch can occur during catalysis. It also appears that the SoxA heme cysteine ligand (and possibly the low redox potential) is important for an efficient reaction with SnSoxYZ/thiosulfate.