Field experiments on chemical and biological changes of thin-layer oyster shells capping sediments in dense aquaculture area.

Thin-layer oyster shell capping has been proposed as a method for improving contaminated coastal environments. Field experiments were conducted to investigate the effects of oyster shell capping on nutrient concentrations, microorganisms, and macrobenthic communities. The concentration of PO4-Pin the experimental area decreased by approximately 38% more than in the control, due to phosphorus fixation of oyster shells and the presence of Proteobacteria. Ammonia-oxidizing bacteria such as the order Pirellulales (phylum Planctomycetes) were related to the low ratio of NH3-N found in dissolved inorganic nitrogen in the experimental area, indicating nitrification promotion. The reduction in annular benthic organisms observed in the experimental area indicates a decline in sediment organic matter, which could potentially mitigate eutrophication. Oyster shell capping was confirmed to be an effective material for restoring coastal sediments by improving their chemical and biological properties.

Evaluation of compressive strength and phosphate fixation characteristics of wastewater filter media using coal bottom ash and oyster shells.

The excessive concentration of phosphate in coastal areas results in environmental problems such as red tide and eutrophication. Filter media (FM) is used in wastewater treatment facilities to decrease phosphate concentration. This study aims to investigate the optimal mixing ratio for high compressive strength and phosphate fixation ability using coal bottom ash (CBA) and oyster shells (OS) -derived FM. Compressive strength experiments were conducted using mixed CBA and OS with different mixing ratios, 1:3 (GBO13), 1:1 (GBO11), and 3:1 (GBO31). The highest compressive strength of 0.93 MPa was observed in GBO11. GBO11 had similar elemental proportions with Portland cement, promoting a pozzolanic reaction and forming calcium-silicate-hydrate. The phosphate fixation capability of GBO11 was evaluated through an up-flow column filtration experiment. GBO11 fixed phosphate through precipitation and adsorption, and the maximum amount of phosphate fixation was estimated to be 1.403 mg-P/g. This study demonstrates that the combination of CBA and OS can be promising FM with high compressive strength and phosphate fixation properties.

Natural Variations in the Benthic Environment and Bacterial Communities of Coastal Sediments around Aquaculture Farms in South Korea.

The aim of this study was to examine the possible seasonal variations in the nutrients (dissolved inorganic nitrogen-DIN and phosphorus) and benthic bacterial communities in marine aquaculture surrounding sediments. The study areas were Geoje, Tongyeong, and Changwon bays in Korea, which are famous for oysters (Magallana gigas), Halocynthia roretzi, and warty sea squirt (Styela clava) farming, respectively. The study sites included semi-enclosed coastal areas with a low seawater exchange rate. Subtidal sediment samples were collected seasonally from the area surrounding the aquacultures between April and December 2020. Seasonal variations in nutrients were observed, with the highest concentration of DIN in August. For phosphorus, site-specific variations were also observed. To investigate the variations in benthic bacterial communities, the advanced technique of 16S rRNA gene amplicon sequencing was applied, and the results indicated a seasonal variation pattern and predominance of Proteobacteria (59.39-69.73%), followed by Bacteroidetes (6.55-12.85%) and Chloroflexi (2.04-4.50%). This study provides a reference for future studies on natural variations in the benthic environment and bacterial communities in the areas surrounding aquacultures. Supplementary Information: The online version contains supplementary material available at 10.1007/s12088-023-01067-8.

A microcosm study of microbial community profiles during sediment remediation using pyrolyzed oyster shells.

The accumulation of organic and inorganic components in sediments leads to a deterioration in the environment and an imbalance in the coastal ecosystem. Currently, capping is the most effective technology for remediating polluted sediment and restoring ecosystems. A microcosm experiment was designed using pyrolyzed oyster shell (POS). These were mixed in with coastal sediment or added as a capping layer. The results showed that POS effectively decreased pollutants, including PO4-P and NH4-N. Metagenomics analysis was performed using 16S rRNA gene sequencing and the most abundant phyla identified in the POS treated and untreated sediments were Proteobacteria, followed by Firmicutes, Bacteroidetes, Chloroflexi, Fusobacteria, Nitrospirae, and Spirochaetes. The relative abundance of Proteobacteria members of the Class Gammaproteobacteria significantly increased, but Deltaproteobacteria gradually decreased throughout the experiment in POS-covered sediment. This suggests that the POS effectively promoted a shift from anaerobic to facultative anaerobic or aerobic microbial communities in the sediment. Dominant species of facultative anaerobic or microaerophilic bacteria from the order Chromatiales and phylum Nitrospirae were observed in the POS-covered sediment. Based on these study results, it can be concluded that POS is an effective covering material for sediment remediation and restores the microbial communities in sediments.

Remediation of contaminated intertidal sediment by increasing permeability using active capping material.

A novel approach for the remediation of clayey sediment in intertidal zones was proposed, which entails increasing the soil permeability using an active capping agent. The agent, granulated coal ash (GCA), was developed using the granulation processes for coal fly ash. The GCA increased the permeability coefficient of the sediment by seven times, changing its the properties from a typical clayey silt to that of silt, according to the soil classification standards based on permeability coefficient. Increased permeability was attributed to Ca2+ ions, and adsorbed Na+ was immediately discharged, leading to a decrease in the sodium adsorption ratio. The activated flow of pore water stimulated nutrient loadings; PO4-P and NH4-N loads decreased by 55% and 44%, respectively. The GCA increased the dissolved oxygen by 1.8 mg/L and increased the redox potential in pore water from -370 to -306 mV vs. Ag/AgCl. According to the results presented in this study, active capping with GCA to increase soil permeability is a novel and promising technology for reducing the nutrient loads and increasing the oxidation of contaminated clayey sediment in intertidal zones.

Machine learning-based prediction of seasonal hypoxia in eutrophic estuary using capacitive potentiometric sensor.

A hypoxia occurred in eutrophic estuary was predicted using long short-term memory (LSTM) model with prediction time steps (PTSs) of 0, 1, 12, and 24 h. A capacitive potential (CP), which provides quantitative information on dissolved oxygen (DO) concentration, was used as a predictor along with precipitation, tide level, salinity, and water temperature. First, annual changes in DO concentration were clustered in three phases of annual DO trends (oversaturation, depletion, and stable) using k-means clustering. CP was the most influential variable in clustering the DO phases. The LSTM was implemented to predict the DO phases and hypoxia occurrences. In the simultaneous prediction of the depletion phase and hypoxia occurrence with a 12 h PTS, the accuracy was 92.1% using CP along with other variables; it was 3.3% higher than that achieved using variables other than CP. In the case of predicting the depletion phase and hypoxia non-occurrence using CP along with other variables, the accuracy was 61.1%, which was 5.5% higher than that when CP was not used. When using CP along with other variables, the total accuracy was highest for all PTS. Overall, the utilization of CP and machine learning techniques enables accurate predictions of both short-term and long-term hypoxia occurrences, providing us with the opportunity to proactively respond to disasters in aquaculture and environmental management due to hypoxia.

The impact of bottom water light exposure on electrical and sediment remediation performance of sediment microbial fuel cells.

Sediment microbial fuel cells (SMFCs) generate bioelectricity from benthic sediments and thus providing both bioelectricity generation and sediment remediation. However, the high internal resistance of the cathode leads to a low power output, which requires research on cathode treatment. In this study, we explored the influence of light irradiation on bioelectricity production and nutrient removal in the SMFC system. The microcosm experiment of the SMFC system was designed with artificial illumination of 500 lux (light-SMFC) and compared with dark conditions of 15 lux (dark-SMFC), which showed that the current increases during photoperiods. The study reveals that light-illuminated SMFC consistently produced the highest voltage, with the highest voltage (553 mV) being 1.3 times higher than the dark-SMFC (440 mV). The polarization curves show a significant reduction in internal cathodic resistance under light condition, resulting in increased voltage generation. The light-SMFC exhibits the highest maximum power density of 35.93 mW/m2, surpassing the dark SMFC of 31.13 mW/m2. It was found that light illumination in the SMFC system increases oxygen availability in the cathodic region, which supports the oxygen reduction reaction (ORR) process. At the same time, the high bioelectricity output contributes to the highest sediment remediation by greatly reducing the chemical oxygen demand (COD) and phosphate (PO4-P) concentrations. The study highlights the potential of light illumination in mitigating cathodic limitation to improve SMFC performance and nutrient removal.

Utilization of Spent Coffee Grounds for Bioelectricity Generation in Sediment Microbial Fuel Cells.

This study examined the utilization of spent coffee grounds with different aqueous extraction methods for the bioelectricity generation from coastal benthic sediment through a sediment microbial fuel cell (SMFC) system. Different methods for the aqueous extraction of SCGs were evaluated, including rinsing and drying of the SCG (SMFC-CRD), immersion, rinsing and drying (SMFC-CRID), drying alone (SMFC-CD), and untreated SCG (SMFC-C). The caffeine concentration in the SCG was significantly reduced using pretreatments, with SMFC-CRID achieving the lowest concentration of 0.021 ± 0.001 mg/g. SMFC-CRD contributed to the generation of the highest current density of 213.7 mA/m2 during closed-circuit operation and exhibited the highest power density of 96.9 mW/m2 in the polarization test, due to the suitable caffeine content of 0.275 ± 0.001 mg/g in the SCG. This study could provide a cost-effective method for reusing SCGs (i.e., 128 g) while generating bioelectricity as an alternative energy source. These results suggest that pretreatment with SCGs is essential for achieving optimal power density and reducing the caffeine concentration in the SMFC system.

Mitogenome features and phylogenetic analysis of red algae, Grateloupia cornea (Rhodophyta, Halymeniales).

The mitogenome is an important tool for taxonomic and evolutionary investigation. Here, a few complete mitogenomes of red algae have been reported. We have reported the complete mitogenome sequences of Grateloupia cornea Okamura, 1913 (Rhodophyta, Halymeniales). The genome is 30,595 bp in circumference, and has a strongly biased [AT] = 66.9%. Like most other Grateloupia species, it has a group II intron in the cox1 gene. Maximum likelihood and maximum parsimony analyses showed that G. cornea is more closely related to G. asiatica. This shows that the group II intron in the cox1 ORF present in most species of Grateloupia was present in their common ancestor, and uniquely lost in G. asiatica. The seven Grateloupia species with known mitogenome sequences remain monophyletic, with the genus Polyopes as sister taxon. The complete mitochondrial genome data will be valuable for future research on comparative mitochondrial genome analysis, an extensive understanding of gene content and organization, evolution of the cox1 intron in Rhodophyta as well as phylogenetic analysis.

Complete Mitochondrial Genome and Its Phylogenetic Position in Red Algae Fushitsunagia catenata from South Korea.

The mitogenome is an important tool in taxonomic and evolutionary studies. Only a few complete mitogenomes have been reported for red algae. Herein, we reported the complete mitochondrial genome sequence of Fushitsunagia catenata (Harvey) Filloramo, G.V. and Saunders, G.W. 2016, a monospecific genus. The genome was 25,889 bp in circumference and had a strongly biased AT of 70.4%. It consisted of 2 rRNAs, 23 tRNAs, and 24 protein-coding genes (PCGs). nad5 (1986 bp) was the largest and atp9 (231 bp) was the smallest PCG. All PCGs used ATG as an initiation codon and TAA as a termination codon, except TAG, which was the termination codon used in the sdh3, rps3, and rps11 genes. The general structure and gene content of the present findings were almost identical to those of other red algae genomes, particularly those of the Rhodymeniales order. The maximum likelihood analysis showed that F. catenata was closely related to Rhodymenia pseudopalmata. The mitochondrial genome data presented in this study will enhance our understanding of evolution in Rhodophyta species.

The complete sequence of the mitochondrial DNA and phylogenetic analysis of the marine red alga Grateloupia elliptica (Rhodophyta: Halymeniales).

Grateloupia elliptica (Holmes, 1896) is a red alga belonging to the order Halymeniales and phylum Rhodophyta. In this study, the complete mitochondrial DNA (mtDNA) of G. elliptica has been described. The complete circular mtDNA of G. elliptica was 28,503 bp in length, with an A + T content of 68.78%; it encoded a total of 49 genes, including 20 tRNA, three rRNA, and 26 protein-coding (CDS) genes. Phylogenetic analysis based on complete mitochondrial genomes revealed that G. elliptica was most closely related to G. angusta. The complete mitochondrial sequence of G. elliptica will enrich the mitochondrial genome database and provide useful resources for population genetics and evolution analyses.

Complete Mitogenome Sequencing, Annotation, and Phylogeny of Grateloupia turuturu, a Red Alga with Intronic cox1 Gene.

The mitochondrial genome (mitogenome) is essential for identifying species and tracing genetic variation, gene patterns, and evolutionary studies. Here, the mitogenome of Grateloupia turuturu was sequenced on the Illumina sequencing platform. This circular mitogenome (28,265 bp) contains 49 genes, including three rRNAs, twenty transfer RNAs (tRNAs), and twenty-six protein-coding genes (PCGs). Nucleotide composition indicates biased AT (68.8%) content. A Group II intronic sequence was identified between two exons of the cox1 gene, and this sequence comprises an open reading frame (ORF) that encodes a hypothetical protein. The gene content, annotation, and genetic makeup are identical to those of Halymeniaceae members. The complete mitogenome sequences of the Grateloupia and Polyopes species were used in a phylogenetic analysis, which revealed that these two genera are monophyletic and that G. turuturu and G. elliptica are closely related. This newly constructed mitogenome will help us better understand the general trends in the development of cox1 introns in Halymeniaceae, as well as the evolution of red algal mitogenomes within the Rhodophyta and among diverse algal species.

Mechanisms of hydrogen sulfide removal with steel making slag.

In the present study, we experimentally investigated the removal of hydrogen sulfide using steel-making slag (SMS) and clarified the mechanism of hydrogen sulfide removal with the SMS. The results proved that SMS is able to remove hydrogen sulfide dissolved in water, and the maximum removal amount of hydrogen sulfide per unit weight of the SMS for 8 days was estimated to be 37.5 mg S/g. The removal processes of hydrogen sulfide were not only adsorption onto the SMS, but oxidation and precipitation as sulfur. The chemical forms of sulfide adsorbed onto the SMS were estimated to be sulfur and manganese sulfide in the ratio of 81% and 19%, respectively. It is demonstrated here that the SMS is a promising material to remediate organically enriched coastal sediments in terms of removal of hydrogen sulfide. Furthermore, using SMS is expected to contribute to development of a recycling-oriented society.

Utilizing a granulated coal bottom ash and oyster shells for nutrient removal in eutrophic sediments.

Various in-situ capping materials have been studied to remediate contaminated sediments for sustaining a healthy ecosystem in a coastal area. We developed Granulated coal bottom ash and oyster shells (GBO) with different mixing ratios of OS. Pyrolyzed and grounded coal bottom ash and oyster shells were used to produce GBO, which the main chemical elements were analogous to cement. The nutrient-removal abilities of GBO were evaluated through long-term mesocosm experiments. It was found that GBO was an effective in-situ capping material for remediation of eutrophic coastal sediments, decreasing PO4-P and SiO2-Si concentrations in pore water by 88.4% and 56.5%, respectively. The most efficient mixing ratio of coal bottom ash and oyster shells was at a weight ratio of 1:1 for PO4-P and SiO2-Si removal.

Effect of sediment deposition on phosphate and hydrogen sulfide removal by granulated coal ash in coastal sediments.

Granulated coal ash (GCA) is a strong in-situ capping material for removing PO4-P and H2S-S in contaminated coastal sediments. Although GCA performance is weakened by sediment deposition, related research is rare. To evaluate sediment deposition effects on PO4-P and H2S-S removal by GCA, GCA was placed on the top of sediment (C-GCA), was partially mixed with sediment (M-GCA), and was fully covered by sediment (N-GCA). Effective PO4-P and H2S-S removal from sediments occurred in the order of C-GCA > M-GCA > N-GCA. C-GCA and M-GCA significantly decreased PO4-P and H2S-S concentrations by 84- 90% and 100%, respectively, through calcium phosphate and iron sulfide precipitation. N-GCA was less effective in PO4-P and H2S-S removal than the control after 2.5 months, as fine sediment particles blocked the GCA pores, decreasing calcium and iron elution. The results provide a better understanding of how sediment deposition negatively impacted GCA performance.

Field study on short-term changes in benthic environment and benthic microbial communities using pyrolyzed oyster shells.

To evaluate the effect of pyrolyzed crushed oyster shells (PCOS) on the remediation of sediments and microbial diversity, a field study was conducted in Buksin Bay, Tongyeong City, Republic of Korea. It was observed that after treatment with PCOS, the concentration of H2S in the sediment of the control site was 287 mg/L. Furthermore, it decreased up to 0 mg/L and remained so until the end of the field study, that is for a period of six months. Moreover, the concentrations of NO2-N + NO3-N, NH4-N, and PO4-P decreased sharply, and the oxidation-reduction potential (ORP) increased after PCOS treatment in pore water and overlying water. Regarding the diversity of microbial communities, the predominance of bacteria from phylum Chlorobi was observed in highly reduced (-410 mV; ORP) sediment, which is well known for the production of H2S. After PCOS treatment, the relative abundance of Chlorobi was sharply suppressed. On the other hand, the predominance of bacteria from the phyla Proteobacteria and Bacteroidetes was observed, and their relative abundance in the PCOS-treated sediment increased throughout the experiment, based on 16S rRNA sequencing. The results demonstrate that the abundance of bacterial communities in the PCOS-treated sediments of Buksin Bay is important for marine ecological functioning, especially for pollutant transformation.

Diversity of Microbial Communities in Sediment from Yeosu Bay, Republic of Korea, as Determined by 16S rRNA Gene Amplicon Sequencing.

Monitoring natural variations in microbial diversity is crucial because microorganisms play a major role in the environmental processes in marine sediment. To evaluate the microbial diversity in Yeosu Bay sediment, 16S rRNA gene amplicon sequencing was performed. Proteobacteria, Chloroflexi, and Bacteroidetes were the predominant phyla in all sediment samples observed.

Physicochemical effects of calcium on suppression of coastal sediment resuspension.

The coastal in-situ capping method can sequester contaminated sediment and suppress sediment resuspension. Few studies have investigated the suppression of sediment resuspension induced by calcium eluted from in-situ capping materials. We investigated the physicochemical suppression of calcium on sediment resuspension. A resuspension experiment was conducted in an annular flume using coastal sediment mixed with 0 g (CSM0), 1 g (CSM1), 5 g (CSM5), and 10 g (CSM10) of Ca(OH)2 under a stepwise increase in bottom shear stress. Calcium enhanced sediment erosion resistance, decreasing suspended sediment concentrations. Exponentially increased SSC in CSM0 and CSM1 was three times higher than that in linearly increased CSM10. Viscosity in CSM10 was approximately three times higher than that in CSM0 and CSM1. Calcium-induced cation exchange increased sediment viscosity via sediment structural rearrangement, calcium-silicate-hydrate production, and the development of larger aggregates. Consequently, calcium suppressed sediment resuspension by physiochemically changing the sediment properties.

Complete mitochondrial genome and phylogenetic analysis of the marine red alga Polyopes affinis (Rhodophyta: Halymeniales).

Polyopes affinis ((Harvey) Kawaguchi & Wang, 2002) is a red alga in the order Halymeniales of the phylum Rhodophyta. The entire mitogenome of P. affinis was sequenced and compared to related Halymeniales species. The entire circular-mitogenome is 25,988 bp long, has 27.59% GC content, and comprises 25 protein-coding genes (CDS), 23 transfer RNA (tRNA) genes, and three ribosomal RNA (rRNA) genes. In terms of gene synteny and tRNA composition, the P. affinis mitogenome differs significantly from that of P. lancifolius. Phylogenetic analysis shows P. affinis mitogenome in a branch sister to P. lancifolius, indicating a close relationship with other Halymeniales species.

Effect of Bacillus subtilis Zeolite Used for Sediment Remediation on Sulfide, Phosphate, and Nitrogen Control in a Microcosm.

Eutrophication is an emerging worldwide issue concerning the excessive accumulation of various pollutants in sediments, owing to the release of industrial or household wastewaters to coastal areas. The coastal sediment of Goseong Bay in the Republic of Korea is organically enriched with pollutants, including heavy metals, sulfide, phosphate, and ammonia. Microbial remediation and capping techniques have been suggested as effective routes for sediment remediation. In this study, Bacillus subtilis zeolite (BZ) was used as a sediment capping material, and effective remediation of coastal sediment was observed in a 40-day laboratory microcosm experiment. A significant decrease in the sediment water content and reduced concentration of acid volatile sulfide were observed in the BZ-capped sediment. In the overlying water and pore water, significant decreases in phosphate and dissolved inorganic nitrogen (DIN; NO2-N + NO3-N and NH4-N) concentrations were observed in the BZ-treated experiment. Based on our findings, we conclude that BZ could be an effective capping material for coastal sediment remediation.