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1.
J Am Chem Soc ; 146(3): 2122-2131, 2024 Jan 24.
Artículo en Inglés | MEDLINE | ID: mdl-38190443

RESUMEN

Bioconjugation chemistry has emerged as a powerful tool for the modification of diverse biomolecules under mild conditions. Tetrazole, initially proposed as a bioorthogonal photoclick handle for 1,3-dipolar cyclization with alkenes, was later demonstrated to possess broader photoreactivity with carboxylic acids, serving as a versatile bioconjugation and photoaffinity labeling probe. In this study, we unexpectedly discovered and validated the photoreactivity between tetrazole and primary amine to afford a new 1,2,4-triazole cyclization product. Given the significance of functionalized N-heterocycles in medicinal chemistry, we successfully harnessed the serendipitously discovered reaction to synthesize both pharmacologically relevant DNA-encoded chemical libraries (DELs) and small molecule compounds bearing 1,2,4-triazole scaffolds. Furthermore, the mild reaction conditions and stable 1,2,4-triazole linkage found broad application in photoinduced bioconjugation scenarios, spanning from intramolecular peptide macrocyclization and templated DNA reaction cross-linking to intermolecular photoaffinity labeling of proteins. Triazole cross-linking products on lysine side chains were identified in tetrazole-labeled proteins, refining the comprehensive understanding of the photo-cross-linking profiles of tetrazole-based probes. Altogether, this tetrazole-amine bioconjugation expands the current bioconjugation toolbox and creates new possibilities at the interface of medicinal chemistry and chemical biology.


Asunto(s)
Aminas , Proteínas , Aminas/química , Ciclización , Proteínas/química , Tetrazoles/química , ADN , Química Clic
2.
J Am Chem Soc ; 146(18): 12519-12529, 2024 May 08.
Artículo en Inglés | MEDLINE | ID: mdl-38666300

RESUMEN

Na3V2(PO4)2F3 is recognized as a promising cathode for high energy density sodium-ion batteries due to its high average potential of ∼3.95 V (vs Na/Na+). A high-voltage-resistant electrolyte is of high importance due to the long duration of 4.2 V (vs Na/Na+) when improving cyclability. Herein, a targeted electrolyte containing additives with two -C≡N groups like succinonitrile has been designed. In this design, one -C≡N group is accessible to the solvation sheath and enables the other -C≡N in dinitrile being exposed and subsequently squeezed into the electric double layer. Then, the squeezed -C≡N group is prone to a preferential adsorption on the electrode surface prior to the exposed -CH2/-CH3 in Na+-solvent and oxidized to construct a stable and electrically insulating interface enriched CN-/NCO-/Na3N. The Na3V2(PO4)2F3-based sodium-ion batteries within a high-voltage of 2-4.3 V (vs Na/Na+) can accordingly achieve an excellent cycling stability (e.g., 95.07% reversible capacity at 1 C for 1,5-dicyanopentane and 98.4% at 2 C and 93.0% reversible capacity at 5 C for succinonitrile after 1000 cycles). This work proposes a new way to design high-voltage electrolytes for high energy density sodium-ion batteries.

3.
Small ; : e2402026, 2024 Apr 24.
Artículo en Inglés | MEDLINE | ID: mdl-38659177

RESUMEN

Mn2+/MnO2 aqueous battery is a promising candidate for large-scale energy storage owing to its feature of low-cost and abundant crustal reserves. However, the inherent MnO2 shedding issue results in a limited areal capacity and poor cycling life, which prohibits its further commercialization. In this manuscript, it is revealed that the cause of shedding is the cracking of MnO2 layer due to stress. To circumvent this challenge, carbon nanotubes framework is introduced on pristine carbon felt, which provides more deposition sites and induces the formation of a porous deposition layer. Compared to the dense deposition layer on pristine carbon felt, the porous structure can effectively avoid cracking and subsequent shedding issue. Moreover, the porous deposited layer is conducive to proton diffusion and rich in defects, which facilitates the subsequent dissolution reaction. As results, the assembled Zn/Mn battery demonstrates more than 200 cycles with the areal capacity of 15 mAh cm-2 at 40 mA cm-2. Even with a high areal capacity of 40 mAh cm-2, it can still run for more than 60 cycles. This breakthrough paves a way toward practical manganese-based batteries, bringing us closer to achieve cost-effective batteries.

4.
Small ; 20(16): e2307627, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38063849

RESUMEN

The high freezing point of polybromides, charging products, is a significant obstacle to the rapid development of zinc-bromine flow batteries (Zn-Br2 FBs). Here, a choline-based complexing agent (CCA) is constructed to liquefy the polybromides at low temperatures. Depending on quaternary ammonium group, choline can effectively complex with polybromide anions and form dense oil-phase that has excellent antifreezing property. Benefiting from indispensable strong ion-ion interaction, the highly selectively compatible CCA, consisting of choline and N-methyl-N-ethyl-morpholinium salts (CCA-M), can be achieved to further enhance bromine fixing ability. Interestingly, the formed polybromides with CCA-M are able to keep liquid even at -40 °C. The CCA-M endows Zn-Br2 FBs at 40 mA cm-2 with unprecedented long cycle life (over 150 cycles) and high Coulombic efficiency (CE, average ≈98.8%) at -20 °C, but also at room temperature (over 1200 cycles, average CE: ≈94.7%). The CCA shows a promising prospect of application and should be extended to other antifreezing bromine-based energy storage systems.

5.
BMC Cancer ; 24(1): 5, 2024 Jan 02.
Artículo en Inglés | MEDLINE | ID: mdl-38166748

RESUMEN

OBJECTIVE: The aim of the study is to identify clinical and dosimetric factors that could predict the risk of radiation-induced hypothyroidism(RIHT) in head and neck cancer(HNC) patients following intensity-modulated radiotherapy(IMRT). METHODS: A total of 103 HNC patients were included in our study. General clinical characteristic and dosimetric data of all recruited patients were analyzed, respectively. The univariate and multivariate logistic regression anlalysis were successively conducted to identify optimal predictors, which aim to construct the nomogram. And the joint prediction was performed. RESULTS: The incidence of patients with HNC was 36.9% (38/103). Among the clinical factors, gender, N stage, chemotherapy, frequency of chemotherapy and surgery involving the thyroid were related to RIHT. Logistic regression analysis showed that thyroid volume, Dmean, VS45, VS50, VS60 and V30,60 were independent predictors of RIHT, which were also incorporated in the nomogram. An AUC of 0.937 (95%CI, 0.888-0.958) also was showed outstanding resolving ability of the nomogram. When the volume of the thyroid was greater than 10.6 cm3, the incidence of RIHT was 14.8%, and when the volume of the thyroid was equal to or smaller than 10.6 cm3, the incidence was 72.5%. The incidence rates of RIHT in the group with VS60≦8.4cm3 and VS60 > 8.4cm3 were 61.4% and 19.3%, respectively. CONCLUSIONS: Thyroid volume and thyroid VS60 are independent predictors of RIHT in patients with HNC. Moreover, more attention should be paid to patients with thyroid volume ≤ 10.6cm3. Thyroid VS60 > 8.4cm3 may be a useful threshold for predicting the development of RIHT. The nomogram conducted by the research may become a potential and valuable tool that could individually predict the risk of RIHT for HNC patients.


Asunto(s)
Neoplasias de Cabeza y Cuello , Hipotiroidismo , Humanos , Dosificación Radioterapéutica , Neoplasias de Cabeza y Cuello/epidemiología , Neoplasias de Cabeza y Cuello/radioterapia , Neoplasias de Cabeza y Cuello/complicaciones , Hipotiroidismo/epidemiología , Hipotiroidismo/etiología , Factores de Riesgo
6.
Epilepsy Behav ; 157: 109868, 2024 May 31.
Artículo en Inglés | MEDLINE | ID: mdl-38823075

RESUMEN

BACKGROUND: Previous research has demonstrated that neuroinflammation is a key element in the progress of epilepsy. Nevertheless, it is currently unidentified which inflammatory factors and proteins increase or decrease the risk of epilepsy. METHODS: We adopted Mendelian randomization techniques to explore the causal relationship between circulating inflammatory factors and proteins and various epilepsy. Our principal approach was inverse variance weighting, supplemented by several sensitivity analyses to guarantee the robustness of our findings. RESULTS: Studies have identified associations between epilepsy and specific inflammatory factors and proteins: three inflammatory factors and six proteins are linked to epilepsy in general; one inflammatory factor and four proteins are associated with focal epilepsy with no documented lesions; two inflammatory factors and three proteins are related to focal epilepsy, excluding cases with hippocampal sclerosis; two inflammatory factors and two proteins are connected to juvenile myoclonic epilepsy; two inflammatory factors and five proteins are linked to juvenile absence epilepsy; four inflammatory proteins are associated with childhood absence epilepsy; two inflammatory factors are related to focal epilepsy overall; two inflammatory factors and two proteins are connected to generalized epilepsy; and two inflammatory proteins are linked to generalized epilepsy with tonic-clonic seizures. Additionally, six inflammatory factors may play a downstream role in focal epilepsy. CONCLUSION: Our study uncovers various inflammatory factors and proteins that influence the risk of epilepsy, offering instructive insights to the diagnosis and therapy of the condition.

7.
Chem Soc Rev ; 52(17): 6031-6074, 2023 Aug 29.
Artículo en Inglés | MEDLINE | ID: mdl-37539656

RESUMEN

Realizing decarbonization and sustainable energy supply by the integration of variable renewable energies has become an important direction for energy development. Flow batteries (FBs) are currently one of the most promising technologies for large-scale energy storage. This review aims to provide a comprehensive analysis of the state-of-the-art progress in FBs from the new perspectives of technological and environmental sustainability, thus guiding the future development of FB technologies. More importantly, we evaluate the current situation and future development of key materials with key aspects of green economy and decarbonization to promote sustainable development and improve the novel energy framework. Finally, we present an analysis of the current challenges and prospects on how to effectively construct low-carbon and sustainable FB materials in the future.

8.
Angew Chem Int Ed Engl ; : e202403607, 2024 Apr 24.
Artículo en Inglés | MEDLINE | ID: mdl-38659136

RESUMEN

Alkaline zinc-ferricyanide flow batteries are efficiency and economical as energy storage solutions. However, they suffer from low energy density and short calendar life. The strongly alkaline conditions (3 mol L-1 OH-) reduce the solubility of ferri/ferro-cyanide (normally only 0.4 mol L-1 at 25 °C) and induce the formation of zinc dendrites at the anode. Here, we report a new zinc-ferricyanide flow battery based on a mild alkalescent (pH 12) electrolyte. Using a chelating agent to rearrange ferri/ferro-cyanide ion-solvent interactions and improve salt dissociation, we increased the solubility of ferri/ferro-cyanide to 1.7 mol L-1 and prevented zinc dendrites. Our battery has an energy density of ~74 Wh L-1 catholyte at 60 °C and remains stable for 1800 cycles (1800 hours) at 0 °C and for >1400 cycles (2300 hours) at 25 °C. An alkalescent zinc-ferricyanide cell stack built using this alkalescent electrolyte stably delivers 608 W of power for ~40 days.

9.
Brief Bioinform ; 22(6)2021 11 05.
Artículo en Inglés | MEDLINE | ID: mdl-34058751

RESUMEN

Genetic and epigenetic contributions to various diseases and biological processes have been well-recognized. However, simultaneous identification of single-nucleotide variants (SNVs) and DNA methylation levels from traditional bisulfite sequencing data is still challenging. Here, we develop double strand bisulfite sequencing (DSBS) for genome-wide accurate identification of SNVs and DNA methylation simultaneously at a single-base resolution by using one dataset. Locking Watson and Crick strand together by hairpin adapter followed by bisulfite treatment and massive parallel sequencing, DSBS simultaneously sequences the bisulfite-converted Watson and Crick strand in one paired-end read, eliminating the strand bias of bisulfite sequencing data. Mutual correction of read1 and read2 can estimate the amplification and sequencing errors, and enables our developed computational pipeline, DSBS Analyzer (https://github.com/tianguolangzi/DSBS), to accurately identify SNV and DNA methylation. Additionally, using DSBS, we provide a genome-wide hemimethylation landscape in the human cells, and reveal that the density of DNA hemimethylation sites in promoter region and CpG island is lower than that in other genomic regions. The cost-effective new approach, which decodes DNA methylome and genomic variants simultaneously, will facilitate more comprehensive studies on numerous diseases and biological processes driven by both genetic and epigenetic variations.


Asunto(s)
Biología Computacional/métodos , Metilación de ADN , Epigenómica/métodos , Análisis de Secuencia de ADN , Programas Informáticos , Sulfitos , Islas de CpG , Epigénesis Genética , Antecedentes Genéticos , Genética de Población , Genómica , Polimorfismo de Nucleótido Simple , Secuenciación Completa del Genoma
10.
J Org Chem ; 88(11): 6565-6572, 2023 06 02.
Artículo en Inglés | MEDLINE | ID: mdl-37213137

RESUMEN

The incorporation of N-containing heterocycles with potential bioactivity into DNA-encoded chemical libraries (DELs) represents an important approach to synthesizing medicinally useful compound collections for high-throughput screening. Herein, we reported a synthetic methodology to afford a benzotriazinone core as a drug-like scaffold in a DNA-compatible manner through aryl diazonium intermediates. Starting from DNA-conjugated amines, anthranilic acid or isatoic anhydride building blocks were coupled to form chemically diversified anthranilamides, which were subsequently transformed into 1,2,3-benzotriazin-4(3H)-one via tert-butyl nitrite-triggered cyclization. This methodology features DEL synthesis compatibility through a mild diazonium intermediate mechanism, allowing late-stage decoration of the bioactive benzotriazinone cap on DNA-conjugated amines. The broad substrate scope and high conversion render this methodology a promising approach to diversifying and decorating DNA-encoded combinatorial peptide-like libraries with medicinally relevant heterocyclic moieties.


Asunto(s)
Replicación del ADN , ADN , ADN/química , Aminas/química , Bibliotecas de Moléculas Pequeñas/química , Ciclización , Biblioteca de Péptidos
11.
Angew Chem Int Ed Engl ; 62(34): e202307796, 2023 Aug 21.
Artículo en Inglés | MEDLINE | ID: mdl-37389543

RESUMEN

The development of water-soluble redox-active molecules with high potentials is one of the effective ways to enhance the energy density of aqueous organic flow batteries (AOFBs). Herein, a series of promising N-substituted benzidine analogues as water-soluble catholyte candidates with controllable redox potentials (0.78-1.01 V vs. standard hydrogen electrode (SHE)) were obtained by the molecular engineering of aqueous irreversible benzidines. Theoretical calculations reveal that the redox potentials of these benzidine derivatives in acidic solution are determined by their electronic structure and alkalinity. Among these benzidine derivatives, N,N,N',N'-tetraethylbenzidine(TEB) shows both high redox potential (0.82 V vs. SHE) and good solubility (1.1 M). Pairing with H4 [Si(W3 O10 )4 ] anolyte, the cell displayed discharge capacity retention of 99.4 % per cycle and a high coulombic efficiency (CE) of ∼100 % over 1200 cycles. The stable discharge capacity of 41.8 Ah L-1 was achieved at the 1.0 M TEB catholyte with a CE of 97.2 % and energy efficiency (EE) of 91.2 %, demonstrating that N-substituted benzidines could be promising for AOFBs.

12.
Angew Chem Int Ed Engl ; 62(6): e202214819, 2023 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-36495124

RESUMEN

As a green route for large-scale energy storage, aqueous organic redox flow batteries (AORFBs) are attracting extensive attention. However, most of the reported AORFBs were operated in an inert atmosphere. Herein, we clarify this issue by using the reported AORFB (i.e., 3, 3'-(9,10-anthraquinone-diyl)bis(3-methylbutanoicacid) (DPivOHAQ)||Ferrocyanide) as an example. We demonstrate that the dissolved O2 can oxidize the discharged DPivOHAQ in anolyte, leading to capacity-imbalance between anolyte and catholyte. Therefore, this cell shows continuous capacity fading when operated in an air atmosphere. We propose a simple strategy for this challenge, in which the oxygen evolution reaction (OER) in catholyte is employed to balance oxygen reduction reaction (ORR) in anolyte. When using the Ni(OH)2 -modifed carbon felt (CF) as a current collector for catholyte, this cell shows an excellent stability in air atmosphere because the Ni(OH)2 -induced OER capacity in catholyte exactly balances the ORR capacity in anolyte. Such O2 -balance strategy facilitates AORFBs' practical application.

13.
Mol Cancer ; 21(1): 153, 2022 07 25.
Artículo en Inglés | MEDLINE | ID: mdl-35879762

RESUMEN

BACKGROUND: Cell division cycle 6 (CDC6) has been proven to be associated with the initiation and progression of human multiple tumors. However, it's role in glioma, which is ranked as one of the common primary malignant tumor in the central nervous system and is associated with high morbidity and mortality, is unclear. METHODS: In this study, we explored CDC6 gene expression level in pan-cancer. Furthermore, we focused on the relationships between CDC6 expression, its prognostic value, potential biological functions, and immune infiltrates in glioma patients. We also performed vitro experiments to assess the effect of CDC6 expression on proliferative, apoptotic, migrant and invasive abilities of glioma cells. RESULTS: As a result, CDC6 expression was upregulated in multiple types of cancer, including glioma. Moreover, high expression of CDC6 was significantly associated with age, IDH status, 1p/19q codeletion status, WHO grade and histological type in glioma (all p < 0.05). Meanwhile, high CDC6 expression was associated with poor overall survival (OS) in glioma patients, especially in different clinical subgroups. Furthermore, a univariate Cox analysis showed that high CDC6 expression was correlated with poor OS in glioma patients. Functional enrichment analysis indicated that CDC6 was mainly involved in pathways related to DNA transcription and cytokine activity, and Gene Set Enrichment Analysis (GSEA) revealed that MAPK pathway, P53 pathway and NF-κB pathway in cancer were differentially enriched in glioma patients with high CDC6 expression. Single-sample gene set enrichment analysis (ssGSEA) showed CDC6 expression in glioma was positively correlated with Th2 cells, Macrophages and Eosinophils, and negative correlations with plasmacytoid dendritic cells, CD8 T cells and NK CD56bright cells, suggesting its role in regulating tumor immunity. Finally, CCK8 assay, flow cytometry and transwell assays showed that silencing CDC6 could significantly inhibit proliferation, migration, invasion, and promoted apoptosis of U87 cells and U251 cells (p < 0.05). CONCLUSION: In conclusion, high CDC6 expression may serve as a promising biomarker for prognosis and correlated with immune infiltrates, presenting to be a potential immune therapy target in glioma.


Asunto(s)
Neoplasias Encefálicas , Glioma , Biomarcadores , Neoplasias Encefálicas/metabolismo , Proteínas de Ciclo Celular/genética , Glioma/patología , Humanos , FN-kappa B , Proteínas Nucleares/genética , Pronóstico
14.
Nucleic Acids Res ; 48(3): 1192-1205, 2020 02 20.
Artículo en Inglés | MEDLINE | ID: mdl-31950163

RESUMEN

Somatic synonymous mutations are one of the most frequent genetic variants occurring in the coding region of cancer genomes, while their contributions to cancer development remain largely unknown. To assess whether synonymous mutations involved in post-transcriptional regulation contribute to the genetic etiology of cancers, we collected whole exome data from 8,320 patients across 22 cancer types. By employing our developed algorithm, PIVar, we identified a total of 22,948 posttranscriptionally impaired synonymous SNVs (pisSNVs) spanning 2,042 genes. In addition, 35 RNA binding proteins impacted by these identified pisSNVs were significantly enriched. Remarkably, we discovered markedly elevated ratio of somatic pisSNVs across all 22 cancer types, and a high pisSNV ratio was associated with worse patient survival in five cancer types. Intriguing, several well-established cancer genes, including PTEN, RB1 and PIK3CA, appeared to contribute to tumorigenesis at both protein function and posttranscriptional regulation levels, whereas some pisSNV-hosted genes, including UBR4, EP400 and INTS1, exerted their function during carcinogenesis mainly via posttranscriptional mechanisms. Moreover, we predicted three drugs associated with two pisSNVs, and numerous compounds associated with expression signature of pisSNV-hosted genes. Our study reveals the prevalence and clinical relevance of pisSNVs in cancers, and emphasizes the importance of considering posttranscriptional impaired synonymous mutations in cancer biology.


Asunto(s)
Carcinogénesis/genética , Genoma Humano/genética , Neoplasias/genética , Mutación Silenciosa/genética , Adulto , Anciano , Proteínas de Unión a Calmodulina/genética , Fosfatidilinositol 3-Quinasa Clase I/genética , ADN Helicasas/genética , Proteínas de Unión al ADN/genética , Exoma/genética , Femenino , Regulación Neoplásica de la Expresión Génica/genética , Humanos , Estimación de Kaplan-Meier , Masculino , Persona de Mediana Edad , Neoplasias/clasificación , Neoplasias/patología , Fosfohidrolasa PTEN/genética , Supervivencia sin Progresión , Procesamiento Proteico-Postraduccional/genética , Sitios de Carácter Cuantitativo/genética , Proteínas de Unión a Retinoblastoma/genética , Ubiquitina-Proteína Ligasas/genética , Proteína Wnt1/genética
15.
Angew Chem Int Ed Engl ; 61(51): e202213751, 2022 Dec 19.
Artículo en Inglés | MEDLINE | ID: mdl-36299166

RESUMEN

Mn2+ /Mn3+ redox pair has been considered as a promising cathode for high energy density batteries, due to its attractive features of high redox potential, solubility and outstanding kinetics. However, the disproportionation side reaction of Mn3+ , which results in accumulation of "dead" MnO2 limits its reversibility and further energy density. Herein, a novel catholyte based on mixture of Mn2+ and Br- was proposed for flow batteries with high energy density and long cycle life. In the design, the "dead" MnO2 can be fully discharged via Br- by a chemical-electrochemical reaction. Coupled with Cd/Cd2+ as anode, the assembled Bromine-Manganese flow battery (BMFB) demonstrates a high energy efficiency of 76 % at 80 mA cm-2 with energy density of 360 Wh L-1 . The battery assembled with silicotungstic acid as anode could continuously run for over 2000 cycles at 80 mA cm-2 . With high power density, energy density and durability, the BMFB shows great potential for large-scale energy storage.

16.
J Am Chem Soc ; 143(33): 13135-13144, 2021 Aug 25.
Artículo en Inglés | MEDLINE | ID: mdl-34313429

RESUMEN

Zinc-based batteries are promising for use as energy storage devices owing to their low cost and high energy density. However, zinc chemistry commonly encounters serious dendrite issues, especially at high areal capacities and current densities, limiting their application. Herein, we propose a novel membrane featuring ordered undulating stripes called "Turing patterns", which can effectively suppress zinc dendrites and improve ion conductivity. The crests and troughs in the Turing membrane can effectively adjust the Zn(OH)42- distribution and provide more zinc deposition space. The coordinated Cu ions during membrane formation can interact with Zn(OH)42-, further smoothing zinc deposition. Even at a high current density of 80 mA·cm-2, the Turing membrane enables an alkaline zinc-iron flow battery (AZIFB) to work stably with an ultrahigh areal capacity of 160 mA·h·cm-2 for approximately 110 cycles, showing an energy efficiency of 90.10%, which is by far the highest value ever reported among zinc-based batteries with such a high current density. This paper provides valid access to zinc-based batteries with high areal capacities based on membrane design and promotes their advancement.

17.
Phys Chem Chem Phys ; 23(46): 26070-26084, 2021 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-34787128

RESUMEN

Zinc-bromine batteries (ZBBs) receive wide attention in distributed energy storage because of the advantages of high theoretical energy density and low cost. However, their large-scale application is still confronted with some obstacles. Therefore, in-depth research and advancement on the structure, electrolyte, anode, cathode and membrane are of great significance and impendency. Herein, we review the past and present investigations on ZBBs, discuss the key problems and technical challenges, and propose perspectives for the future, with the focus on materials and chemistry. This perspective would provide valuable information on further development of ZBBs.

18.
Nucleic Acids Res ; 47(D1): D1044-D1055, 2019 01 08.
Artículo en Inglés | MEDLINE | ID: mdl-30445567

RESUMEN

Whole-exome and whole-genome sequencing have revealed millions of somatic mutations associated with different human cancers, and the vast majority of them are located outside of coding sequences, making it challenging to directly interpret their functional effects. With the rapid advances in high-throughput sequencing technologies, genome-scale long-range chromatin interactions were detected, and distal target genes of regulatory elements were determined using three-dimensional (3D) chromatin looping. Herein, we present OncoBase (http://www.oncobase.biols.ac.cn/), an integrated database for annotating 81 385 242 somatic mutations in 68 cancer types from more than 120 cancer projects by exploring their roles in distal interactions between target genes and regulatory elements. OncoBase integrates local chromatin signatures, 3D chromatin interactions in different cell types and reconstruction of enhancer-target networks using state-of-the-art algorithms. It employs informative visualization tools to display the integrated local and 3D chromatin signatures and effects of somatic mutations on regulatory elements. Enhancer-promoter interactions estimated from chromatin interactions are integrated into a network diffusion system that quantitatively prioritizes somatic mutations and target genes from a large pool. Thus, OncoBase is a useful resource for the functional annotation of regulatory noncoding regions and systematically benchmarking the regulatory effects of embedded noncoding somatic mutations in human carcinogenesis.


Asunto(s)
Biología Computacional/métodos , Bases de Datos Genéticas , Secuenciación de Nucleótidos de Alto Rendimiento/métodos , Mutación , Neoplasias/genética , Secuencias Reguladoras de Ácidos Nucleicos/genética , Secuencia de Bases , Cromatina/genética , Regulación Neoplásica de la Expresión Génica , Genómica/métodos , Humanos , Internet , Sitios de Carácter Cuantitativo/genética , Reproducibilidad de los Resultados
19.
Angew Chem Int Ed Engl ; 60(21): 11718-11724, 2021 May 17.
Artículo en Inglés | MEDLINE | ID: mdl-33751713

RESUMEN

Nitrocellulose (NC) is proposed to stabilize the electrolytes for Li metal batteries. The nitro group of NC preferentially reacts with Li metal, and along with the cellulose skeleton is tightly wrapped on the surface, so that the polymer-inorganic double layer is formed on the Li surface. XPS profile analysis and corroborative cryo-environmental TEM reveal that the flexible outer layer of the bilayer is a C-O organic layer, while the dense inner layer is mainly composed of crystalline lithium oxide, lithium oxynitride, and lithium nitride. The Li deposition process was observed via in situ optical microscopy, which indicated that the NC-derived bilayer facilitates the uniform deposition of Li ions and inhibits the growth of dendrites. After the introduction of NC into the electrolyte, the cycle life of the Li battery is twice than that of the Li battery without NC at 1.0 and 3.0 mA cm-2 .

20.
Zhong Nan Da Xue Xue Bao Yi Xue Ban ; 46(4): 351-360, 2021 Apr 28.
Artículo en Inglés, Zh | MEDLINE | ID: mdl-33967080

RESUMEN

OBJECTIVES: Due to the genetic feature of high diversity than other DNA markers, short tandem repeat (STR) plays key roles in forensic, anthropology, and population genetics. Newly introduced multiple STR kit is more valuable because of the greatly improved discriminatory power with the increase in the number of STR loci. The genetic polymorphic data are essential for the application and research in specific population. This study aims to investigate the genetic polymorphism of Han population residing in Yuncheng district, Shanxi Province, to evaluate the application of 23 STR loci in forensic personal identification and paternity test, and to explore the genetic relationship of Han population between Yuncheng and other populations. METHODS: A total of 23 STR loci were amplified from 525 healthy unrelated individuals from the Han nationality in Yuncheng, Shanxi Province using the AGCU EX25 amplification kit. The products were detected and separated by ABI 3500 Genetic Analyzer. Alleles were genotyped by GeneMapper ID (Version 3.2) software, and corresponding frequencies and forensic parameters were calculated. We calculated the genetic distance and plotted the neighboring-joining tree with other 13 population. RESULTS: The allele frequency of the 23 STRs ranged from 0.0010 to 0.5090. No deviation from Hardy-Weinberg equilibrium (P>0.05) and linkage disequilibrium was observed. The cumulative discriminatory power (CPD), cumulative power of exclusion for trios (CPEtrio)and cumulative Power of exclusion for duos (CPEduo) with total 23 STRs were 1-1.305 263 374 8×10-27, 1-2.583 152 052 2×10-10 and 1-1.193 637 500 4×10-6, respectively. Comprehensive population comparison showed that Shanxi Yuncheng Han nationality was genetically closer to populations of the same linguistic family or geographically close proximity, such as Shaanxi Weinan Han, Liaoning Han, and Ningbo Han nationality while relatively far away from different linguistic ethnic groups and geographically distant populations like Xinjiang Uygur and Guangdong Han nationality. CONCLUSIONS: These 23 STRs are highly genetic polymorphic and informative in the Han population of Yuncheng, Shanxi Province, which can provide basic data for forensic personal identification, paternity testing, and population genetic research.


Asunto(s)
Pueblo Asiatico , Repeticiones de Microsatélite , Pueblo Asiatico/genética , China , Etnicidad/genética , Frecuencia de los Genes , Sitios Genéticos , Genética de Población , Humanos , Repeticiones de Microsatélite/genética , Polimorfismo Genético
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