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1.
Scand J Gastroenterol ; 57(7): 783-791, 2022 07.
Artículo en Inglés | MEDLINE | ID: mdl-35234561

RESUMEN

BACKGROUND AND AIMS: Glucagon-like peptide-1 receptor agonist ROSE-010 has been studied for management of irritable bowel syndrome (IBS). ROSE-010 showed promising effects by reducing pain during attacks of IBS. In this exploratory substudy, we cross-analyzed earlier data to identify the most suitable subpopulation for treatment with ROSE-010. METHODS: Data comprising 166 participants (116 females, 50 males) treated by subcutaneous injection with ROSE-010 at 100 µg and 300 µg versus placebo were broken down into subpopulations with recall of historical pain intensity, pain intensity immediately before treatment, gender, age, BMI, IBS subtype as well as pain intensity and pain relief of ROSE-010 with relationship to plasma glucose using visual analogue scores. Statistical cross-analysis was performed to detect optimal responders for adequate pain relief response. RESULTS: ROSE-010 gave dose- and time-dependent effects with maximum pain relief at 300 µg relative 100 µg and placebo at 120 min post injection. Females had greater pain relief than males; age and BMI did not affect treatment response. IBS pain relief was greatest in constipation-dominant IBS (IBS-C) and mixed IBS (IBS-M) relative diarrhea-dominant and unspecified IBS. CONCLUSIONS: Clinical trial data indicate that female participants are more likely than males to respond to ROSE-010 100 µg and 300 µg to achieve meaningful IBS pain relief. Maximum pain relief was achieved at 120 min with the higher dose, although this was accompanied with higher rates of nausea. Improvement of IBS pain attacks was most pronounced in IBS-C and IBS-M, suggesting these subgroups to be optimal ROSE-010 responders.


Asunto(s)
Síndrome del Colon Irritable , Estreñimiento/diagnóstico , Diarrea/diagnóstico , Femenino , Péptido 1 Similar al Glucagón/análogos & derivados , Receptor del Péptido 1 Similar al Glucagón/uso terapéutico , Humanos , Síndrome del Colon Irritable/complicaciones , Síndrome del Colon Irritable/diagnóstico , Síndrome del Colon Irritable/tratamiento farmacológico , Masculino , Dolor , Dimensión del Dolor , Fragmentos de Péptidos , Resultado del Tratamiento
2.
J Hepatol ; 75(1): 98-107, 2021 07.
Artículo en Inglés | MEDLINE | ID: mdl-33894327

RESUMEN

BACKGROUND & AIMS: Golexanolone is a novel small molecule GABA-A receptor-modulating steroid antagonist under development for the treatment of cognitive and vigilance disorders caused by allosteric over-activation of GABA-A receptors by neurosteroids. It restored spatial learning and motor coordination in animal models of hepatic encephalopathy (HE) and mitigated the effects of intravenous allopregnanolone in healthy adults in a dose-dependent fashion. Herein, we report data on the safety, pharmacokinetics (PK) and efficacy of golexanolone in adult patients with cirrhosis. METHODS: Following single/multiple ascending dose studies, adults with Child-Pugh A/B cirrhosis and abnormal continuous reaction time (CRT) on screening were randomized to 3 weeks' dosing with golexanolone (10, 40 or 80 mg BID) or placebo. CRT, psychometric hepatic encephalopathy score (PHES), animal naming test (ANT), Epworth sleepiness scale (ESS) and electroencephalogram (mean dominant frequency [MDF]; delta+theta/alpha+beta ratio [DT/AB]) were obtained at baseline, 10, and 21 days. RESULTS: Golexanolone exhibited satisfactory safety and PK. Baseline characteristics were similar between the 12 and 33 patients randomized to placebo or golexanolone, respectively. By prespecified analyses, golexanolone was associated with directionally favourable changes vs. placebo in ESS (p = 0.047), MDF (p = 0.142) and DT/AB (p = 0.021). All patients also showed directionally favourable changes in CRT, PHES and ANT, but with no statistical difference between golexanolone and placebo. Post hoc analyses taking into account the variability and improvement in CRT, PHES and ANT observed between screening and baseline suggested an efficacy signal by cognitive measures as well. CONCLUSION: Golexanolone was well tolerated and associated with improvement in cognitive performance. These results implicate GABA-A receptor-modulating neurosteroids in the pathogenesis of HE and support the therapeutic potential of golexanolone. LAY SUMMARY: Many patients with cirrhosis experience subtle but disabling cognitive problems, including sleepiness and poor attention span, that impair their ability to be gainfully employed or carry out activities of daily living. This pilot study tested the hypothesis that these problems with cognition, for which there is no approved treatment, might be improved by an experimental drug, golexanolone, designed to normalize the function of receptors which inhibit brain function. The results of this study suggest that golexanolone is well tolerated and may improve cognition, as reflected by measures of sleepiness, attention span and brain wave activity, paving the way for future larger studies of this promising experimental drug. CLINICAL TRIAL REGISTRATION NUMBER: EudraCT 2016-003651-30.


Asunto(s)
Cognición/efectos de los fármacos , Antagonistas de Receptores de GABA-A , Encefalopatía Hepática , Fenantrenos , Actividades Cotidianas , Nivel de Alerta/efectos de los fármacos , Atención/efectos de los fármacos , Método Doble Ciego , Drogas en Investigación , Electroencefalografía/métodos , Femenino , Antagonistas de Receptores de GABA-A/administración & dosificación , Antagonistas de Receptores de GABA-A/efectos adversos , Antagonistas de Receptores de GABA-A/farmacocinética , Encefalopatía Hepática/diagnóstico , Encefalopatía Hepática/tratamiento farmacológico , Encefalopatía Hepática/etiología , Encefalopatía Hepática/metabolismo , Humanos , Cirrosis Hepática/complicaciones , Masculino , Persona de Mediana Edad , Pruebas Neuropsicológicas , Neuroesteroides/administración & dosificación , Neuroesteroides/efectos adversos , Neuroesteroides/farmacocinética , Fenantrenos/administración & dosificación , Fenantrenos/efectos adversos , Fenantrenos/farmacocinética , Proyectos Piloto , Somnolencia/efectos de los fármacos , Resultado del Tratamiento
3.
Bioinformatics ; 33(7): 1081-1082, 2017 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-28057677

RESUMEN

Summary: PanViz is a novel, interactive, visualization tool for pangenome analysis. PanViz allows visualization of changes in gene group (groups of similar genes across genomes) classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. Furthermore it allows for rich and complex visual querying of gene groups in the pangenome. PanViz visualizations require no external programs and are easily sharable, allowing for rapid pangenome analyses. Availability and Implementation: PanViz is written entirely in JavaScript and is available on https://github.com/thomasp85/PanViz . A companion R package that facilitates the creation of PanViz visualizations from a range of data formats is released through Bioconductor and is available at https://bioconductor.org/packages/PanVizGenerator . Contact: thomasp85@gmail.com. Supplementary information: Supplementary data are available at Bioinformatics online.


Asunto(s)
Genoma , Programas Informáticos , Gráficos por Computador , Ontología de Genes , Genómica , Anotación de Secuencia Molecular
4.
Appl Environ Microbiol ; 80(1): 146-53, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24141121

RESUMEN

We have previously reported that some strains belonging to the marine Actinobacteria class, the Pseudoalteromonas genus, the Roseobacter clade, and the Photobacteriaceae and Vibrionaceae families produce both antibacterial and antivirulence compounds, and these organisms are interesting from an applied point of view as fish probiotics or as a source of pharmaceutical compounds. The application of either organisms or compounds requires that they do not cause any side effects, such as toxicity in eukaryotic organisms. The purpose of this study was to determine whether these bacteria or their compounds have any toxic side effects in the eukaryotic organisms Artemia sp. and Caenorhabditis elegans. Arthrobacter davidanieli WX-11, Pseudoalteromonas luteoviolacea S4060, P. piscicida S2049, P. rubra S2471, Photobacterium halotolerans S2753, and Vibrio coralliilyticus S2052 were lethal to either or both model eukaryotes. The toxicity of P. luteoviolacea S4060 could be related to the production of the antibacterial compound pentabromopseudilin, while the adverse effect observed in the presence of P. halotolerans S2753 and V. coralliilyticus S2052 could not be explained by the production of holomycin nor andrimid, the respective antibiotic compounds in these organisms. In contrast, the tropodithietic acid (TDA)-producing bacteria Phaeobacter inhibens DSM17395 and Ruegeria mobilis F1926 and TDA itself had no adverse effect on the target organisms. These results reaffirm TDA-producing Roseobacter bacteria as a promising group to be used as probiotics in aquaculture, whereas Actinobacteria, Pseudoalteromonas, Photobacteriaceae, and Vibrionaceae should be used with caution.


Asunto(s)
Actinobacteria/metabolismo , Alphaproteobacteria/metabolismo , Artemia/microbiología , Toxinas Bacterianas/toxicidad , Caenorhabditis elegans/microbiología , Gammaproteobacteria/metabolismo , Probióticos/toxicidad , Actinobacteria/patogenicidad , Alphaproteobacteria/patogenicidad , Animales , Artemia/fisiología , Caenorhabditis elegans/fisiología , Gammaproteobacteria/patogenicidad , Análisis de Supervivencia
5.
Mar Drugs ; 12(6): 3681-705, 2014 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-24955556

RESUMEN

In drug discovery, reliable and fast dereplication of known compounds is essential for identification of novel bioactive compounds. Here, we show an integrated approach using ultra-high performance liquid chromatography-diode array detection-quadrupole time of flight mass spectrometry (UHPLC-DAD-QTOFMS) providing both accurate mass full-scan mass spectrometry (MS) and tandem high resolution MS (MS/HRMS) data. The methodology was demonstrated on compounds from bioactive marine-derived strains of Aspergillus, Penicillium, and Emericellopsis, including small polyketides, non-ribosomal peptides, terpenes, and meroterpenoids. The MS/HRMS data were then searched against an in-house MS/HRMS library of ~1300 compounds for unambiguous identification. The full scan MS data was used for dereplication of compounds not in the MS/HRMS library, combined with ultraviolet/visual (UV/Vis) and MS/HRMS data for faster exclusion of database search results. This led to the identification of four novel isomers of the known anticancer compound, asperphenamate. Except for very low intensity peaks, no false negatives were found using the MS/HRMS approach, which proved to be robust against poor data quality caused by system overload or loss of lock-mass. Only for small polyketides, like patulin, were both retention time and UV/Vis spectra necessary for unambiguous identification. For the ophiobolin family with many structurally similar analogues partly co-eluting, the peaks could be assigned correctly by combining MS/HRMS data and m/z of the [M + Na]+ ions.


Asunto(s)
Ascomicetos/metabolismo , Aspergillus/metabolismo , Cromatografía Líquida de Alta Presión/métodos , Penicillium/metabolismo , Ascomicetos/aislamiento & purificación , Aspergillus/aislamiento & purificación , Productos Biológicos/análisis , Productos Biológicos/química , Productos Biológicos/aislamiento & purificación , Espectrometría de Masas/métodos , Penicillium/aislamiento & purificación , Reproducibilidad de los Resultados , Metabolismo Secundario , Espectrometría de Masas en Tándem/métodos
6.
Anal Chem ; 85(15): 7014-8, 2013 Aug 06.
Artículo en Inglés | MEDLINE | ID: mdl-23819546

RESUMEN

Microorganisms such as bacteria and fungi produce a variety of specialized metabolites that are invaluable for agriculture, biological research, and drug discovery. However, the screening of microbial metabolic output is usually a time-intensive task. Here, we utilize a liquid microjunction surface sampling probe for electrospray ionization-mass spectrometry to extract and ionize metabolite mixtures directly from living microbial colonies grown on soft nutrient agar in Petri-dishes without any sample pretreatment. To demonstrate the robustness of the method, this technique was applied to observe the metabolic output of more than 30 microorganisms, including yeast, filamentous fungi, pathogens, and marine-derived bacteria, that were collected worldwide. Diverse natural products produced from different microbes, including Streptomyces coelicolor , Bacillus subtilis , and Pseudomonas aeruginosa are further characterized.


Asunto(s)
Bacterias/metabolismo , Hongos/metabolismo , Metabolómica/métodos , Espectrometría de Masa por Ionización de Electrospray/métodos , Levaduras/metabolismo , Bacterias/crecimiento & desarrollo , Hongos/crecimiento & desarrollo , Factores de Tiempo , Levaduras/crecimiento & desarrollo
7.
Mar Drugs ; 11(12): 5051-62, 2013 Dec 12.
Artículo en Inglés | MEDLINE | ID: mdl-24351904

RESUMEN

During our search for new natural products from the marine environment, we discovered a wide range of cyclic peptides from a marine Photobacterium, closely related to P. halotolerans. The chemical fingerprint of the bacterium showed primarily non-ribosomal peptide synthetase (NRPS)-like compounds, including the known pyrrothine antibiotic holomycin and a wide range of peptides, from diketopiperazines to cyclodepsipeptides of 500-900 Da. Purification of components from the pellet fraction led to the isolation and structure elucidation of four new cyclodepsipeptides, ngercheumicin F, G, H, and I. The ngercheumicins interfered with expression of virulence genes known to be controlled by the agr quorum sensing system of Staphylococcus aureus, although to a lesser extent than the previously described solonamides from the same strain of Photobacterium.


Asunto(s)
Proteínas Bacterianas/aislamiento & purificación , Depsipéptidos/aislamiento & purificación , Photobacterium/química , Percepción de Quorum/efectos de los fármacos , Antibacterianos/aislamiento & purificación , Antibacterianos/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Depsipéptidos/genética , Depsipéptidos/metabolismo , Lactamas/metabolismo , Péptido Sintasas/genética , Péptido Sintasas/metabolismo , Photobacterium/genética , Photobacterium/metabolismo , Percepción de Quorum/genética , Staphylococcus aureus/efectos de los fármacos , Staphylococcus aureus/genética , Staphylococcus aureus/metabolismo , Virulencia/genética
8.
Am J Physiol Gastrointest Liver Physiol ; 303(1): G120-8, 2012 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-22517769

RESUMEN

The glucagon-like peptide 1 (GLP-1) analog ROSE-010 reduced pain during acute exacerbations of irritable bowel syndrome (IBS). Our objective was to assess effects of ROSE-010 on several gastrointestinal (GI) motor and bowel functions in constipation-predominant IBS (IBS-C). In a single-center, randomized, parallel-group, double-blind, placebo-controlled, dose-response study, we evaluated safety, pharmacodynamics, and pharmacokinetics in female patients with IBS-C. ROSE-010 (30, 100, or 300 µg sc) or matching placebo was administered once daily for 3 consecutive days and on 1 day 2-10 days later. We measured GI and colonic transit by validated scintigraphy and gastric volumes by single-photon emission computed tomography. The primary end points were half time of gastric emptying of solids, colonic transit geometric center at 24 h, and gastric accommodation volume. Analysis included intent-to-treat principle, analysis of covariance (with body mass index as covariate), and Dunnett-Hsu test for multiple comparisons. Exposure to ROSE-010 was approximately dose-proportional across the dose range tested. Demographic data in four treatment groups of female IBS-C patients (total 46) were not different. Gastric emptying was significantly retarded by 100 and 300 µg of ROSE-010. There were no significant effects of ROSE-010 on gastric volumes, small bowel or colonic transit at 24 h, or bowel functions. The 30- and 100-µg doses accelerated colonic transit at 48 h. Adverse effects were nausea (P < 0.001 vs. placebo) and vomiting (P = 0.008 vs. placebo). Laboratory safety results were not clinically significant. In IBS-C, ROSE-010 delayed gastric emptying of solids but did not retard colonic transit or alter gastric accommodation; the accelerated colonic transit at 48 h with 30 and 100 µg of ROSE-010 suggests potential for relief of constipation in IBS-C.


Asunto(s)
Estreñimiento/tratamiento farmacológico , Fármacos Gastrointestinales/farmacología , Fármacos Gastrointestinales/uso terapéutico , Motilidad Gastrointestinal/efectos de los fármacos , Péptido 1 Similar al Glucagón/análogos & derivados , Péptido 1 Similar al Glucagón/farmacología , Síndrome del Colon Irritable/tratamiento farmacológico , Fragmentos de Péptidos/farmacología , Adolescente , Adulto , Anciano , Área Bajo la Curva , Estreñimiento/diagnóstico por imagen , Estreñimiento/etiología , Defecación/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Método Doble Ciego , Determinación de Punto Final , Femenino , Vaciamiento Gástrico/efectos de los fármacos , Fármacos Gastrointestinales/farmacocinética , Tránsito Gastrointestinal/efectos de los fármacos , Péptido 1 Similar al Glucagón/efectos adversos , Péptido 1 Similar al Glucagón/farmacocinética , Receptor del Péptido 1 Similar al Glucagón , Humanos , Síndrome del Colon Irritable/complicaciones , Síndrome del Colon Irritable/diagnóstico por imagen , Persona de Mediana Edad , Dimensión del Dolor , Fragmentos de Péptidos/efectos adversos , Fragmentos de Péptidos/farmacocinética , Radiofármacos , Receptores de Glucagón/efectos de los fármacos , Pertecnetato de Sodio Tc 99m , Estómago/anatomía & histología , Estómago/diagnóstico por imagen , Tomografía Computarizada de Emisión de Fotón Único , Adulto Joven
9.
Appl Environ Microbiol ; 78(6): 2039-42, 2012 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-22247128

RESUMEN

We isolated 16 antibiotic-producing bacterial strains throughout the central Arctic Ocean, including seven Arthrobacter spp. with almost identical 16S rRNA gene sequences. These strains were numerically rare, as revealed using 454 pyrosequencing libraries. Arthrobacter spp. produced arthrobacilins A to C under different culture conditions, but other, unidentified compounds likely contributed to their antibiotic activity.


Asunto(s)
Antibacterianos/biosíntesis , Arthrobacter/aislamiento & purificación , Arthrobacter/metabolismo , Agua de Mar/microbiología , Regiones Árticas , Arthrobacter/clasificación , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Datos de Secuencia Molecular , Océanos y Mares , Filogenia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
10.
Mar Drugs ; 10(8): 1729-1740, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23015771

RESUMEN

Some microbial species are chemically homogenous, and the same secondary metabolites are found in all strains. In contrast, we previously found that five strains of P. luteoviolacea were closely related by 16S rRNA gene sequence but produced two different antibiotic profiles. The purpose of the present study was to determine whether such bioactivity differences could be linked to genotypes allowing methods from phylogenetic analysis to aid in selection of strains for biodiscovery. Thirteen P. luteoviolacea strains divided into three chemotypes based on production of known antibiotics and four antibacterial profiles based on inhibition assays against Vibrio anguillarum and Staphylococcus aureus. To determine whether chemotype and inhibition profile are reflected by phylogenetic clustering we sequenced 16S rRNA, gyrB and recA genes. Clustering based on 16S rRNA gene sequences alone showed little correlation to chemotypes and inhibition profiles, while clustering based on concatenated 16S rRNA, gyrB, and recA gene sequences resulted in three clusters, two of which uniformly consisted of strains of identical chemotype and inhibition profile. A major time sink in natural products discovery is the effort spent rediscovering known compounds, and this study indicates that phylogeny clustering of bioactive species has the potential to be a useful dereplication tool in biodiscovery efforts.


Asunto(s)
Antibacterianos/farmacología , Pseudoalteromonas/metabolismo , ARN Ribosómico 16S/genética , Antibacterianos/aislamiento & purificación , Descubrimiento de Drogas/métodos , Datos de Secuencia Molecular , Familia de Multigenes , Filogenia , Pseudoalteromonas/genética , Análisis de Secuencia de ADN , Staphylococcus aureus/efectos de los fármacos , Vibrio/efectos de los fármacos
11.
Mar Drugs ; 10(11): 2584-95, 2012 Nov 21.
Artículo en Inglés | MEDLINE | ID: mdl-23203279

RESUMEN

Staphylococcus aureus is a serious human pathogen that employs a number of virulence factors as part of its pathogenesis. The purpose of the present study was to explore marine bacteria as a source of compounds that modulate virulence gene expression in S. aureus. During the global marine Galathea 3 expedition, a strain collection was established comprising bacteria that express antimicrobial activity against Vibrio anguillarum and/or Staphylococcus aureus. Within this collection we searched colony material, culture supernatants, and cell extracts for virulence modulating activity showing that 68 out of 83 marine bacteria (affiliated with the Vibrionaceae and Pseudoalteromonas sp.) influenced expression of S. aureus hla encoding α-hemolysin toxin and/or spa encoding Protein A. The isolate that upon initial screening showed the highest degree of interference (crude ethyl acetate extract) was a Vibrio nigripulchritudo. Extraction, purification and structural elucidation revealed a novel siderophore, designated nigribactin, which induces spa transcription. The effect of nigribactin on spa expression is likely to be independent from its siderophore activity, as another potent siderophore, enterobactin, failed to influence S. aureus virulence gene expression. This study shows that marine microorganisms produce compounds with potential use in therapeutic strategies targeting virulence rather than viability of human pathogens.


Asunto(s)
Catecoles/farmacología , Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Sideróforos/farmacología , Espermidina/análogos & derivados , Staphylococcus aureus/efectos de los fármacos , Vibrio/química , Toxinas Bacterianas/genética , Catecoles/aislamiento & purificación , Proteínas Hemolisinas/genética , Sideróforos/aislamiento & purificación , Espermidina/aislamiento & purificación , Espermidina/farmacología , Proteína Estafilocócica A/genética , Staphylococcus aureus/patogenicidad , Transcripción Genética , Factores de Virulencia/genética
12.
J Nat Prod ; 74(11): 2338-48, 2011 Nov 28.
Artículo en Inglés | MEDLINE | ID: mdl-22026385

RESUMEN

Dereplication, the rapid identification of known compounds present in a mixture, is crucial to the fast discovery of novel natural products. Determining the elemental composition of compounds in mixtures and tentatively identifying natural products using MS/MS and UV/vis spectra is becoming easier with advances in analytical equipment and better compound databases. Here we demonstrate the use of LC-UV/vis-MS-based dereplication using data from UV/vis diode array detection and ESI+/ESI- time-of-flight MS for assignment of 719 microbial natural product and mycotoxin reference standards. ESI+ was the most versatile ionization method, detecting 93% of the compounds, although with 12% ionizing poorly. Using ESI+ alone, 56.1% of the compounds could be unambiguously assigned based on characteristic patterns of multiple adduct ions. Using ESI-, 36.4% of the compounds could have their molecular mass assigned unambiguously using multiple adduct ions, while a further 41% of the compounds were detected only as [M - H]-. The most reliable interpretations of conflicting ESI+ and ESI- data on a chromatographic peak were from the ionization polarity with the most intense ionization. Poor ionization was most common with small molecules (<200 Da). In ESI-, these were often polar and basic, while in ESI+ they were small aromatic acids or anthraquinones. No single ion-source settings could be applied over a m/z 60-2000 range. However, continuous switching among three settings (e.g., for 0.5 s each) during the chromatographic run allowed MS of both small labile molecules and large peptides, and pseudo MS/MS data on labile molecules since the settings for large molecules often induce fragmentation into small molecules.


Asunto(s)
Productos Biológicos , Productos Biológicos/análisis , Productos Biológicos/química , Productos Biológicos/metabolismo , Estructura Molecular , Peso Molecular , Espectrometría de Masa por Ionización de Electrospray , Espectrometría de Masas en Tándem
13.
Mar Drugs ; 9(9): 1440-1468, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-22131950

RESUMEN

Bacteria belonging to the Vibrionaceae family are widespread in the marine environment. Today, 128 species of vibrios are known. Several of them are infamous for their pathogenicity or symbiotic relationships. Despite their ability to interact with eukaryotes, the vibrios are greatly underexplored for their ability to produce bioactive secondary metabolites and studies have been limited to only a few species. Most of the compounds isolated from vibrios so far are non-ribosomal peptides or hybrids thereof, with examples of N-containing compounds produced independent of nonribosomal peptide synthetases (NRPS). Though covering a limited chemical space, vibrios produce compounds with attractive biological activities, including antibacterial, anticancer, and antivirulence activities. This review highlights some of the most interesting structures from this group of bacteria. Many compounds found in vibrios have also been isolated from other distantly related bacteria. This cosmopolitan occurrence of metabolites indicates a high incidence of horizontal gene transfer, which raises interesting questions concerning the ecological function of some of these molecules. This account underlines the pending potential for exploring new bacterial sources of bioactive compounds and the challenges related to their investigation.


Asunto(s)
Vibrionaceae/metabolismo , Antibacterianos/biosíntesis , Ecología , Variación Genética , Filogenia , Percepción de Quorum , Sideróforos/biosíntesis , Vibrionaceae/clasificación , Vibrionaceae/genética
14.
Mar Drugs ; 9(12): 2537-2552, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22363239

RESUMEN

During a global research expedition, more than five hundred marine bacterial strains capable of inhibiting the growth of pathogenic bacteria were collected. The purpose of the present study was to determine if these marine bacteria are also a source of compounds that interfere with the agr quorum sensing system that controls virulence gene expression in Staphylococcus aureus. Using a gene reporter fusion bioassay, we recorded agr interference as enhanced expression of spa, encoding Protein A, concomitantly with reduced expression of hla, encoding α-hemolysin, and rnaIII encoding RNAIII, the effector molecule of agr. A marine Photobacterium produced compounds interfering with agr in S. aureus strain 8325-4, and bioassay-guided fractionation of crude extracts led to the isolation of two novel cyclodepsipeptides, designated solonamide A and B. Northern blot analysis confirmed the agr interfering activity of pure solonamides in both S. aureus strain 8325-4 and the highly virulent, community-acquired strain USA300 (CA-MRSA). To our knowledge, this is the first report of inhibitors of the agr system by a marine bacterium.


Asunto(s)
Depsipéptidos/farmacología , Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Photobacterium/metabolismo , Percepción de Quorum/efectos de los fármacos , Staphylococcus aureus/efectos de los fármacos , Microbiología del Agua , Depsipéptidos/química , Depsipéptidos/metabolismo , Espectroscopía de Resonancia Magnética , Staphylococcus aureus/genética , Staphylococcus aureus/patogenicidad , Virulencia
15.
J Nat Prod ; 73(6): 1126-32, 2010 Jun 25.
Artículo en Inglés | MEDLINE | ID: mdl-20509666

RESUMEN

Microbial natural products (NP) cover a high chemical diversity, and in consequence extracts from microorganisms are often complex to analyze and purify. A distribution analysis of calculated pK(a) values from the 34390 records in Antibase2008 revealed that within pH 2-11, 44% of all included compounds had an acidic functionality, 17% a basic functionality, and 9% both. This showed a great potential for using ion-exchange chromatography as an integral part of the separation procedure, orthogonal to the classic reversed-phase strategy. Thus, we investigated the use of an "explorative solid-phase extraction" (E-SPE) protocol using SAX, Oasis MAX, SCX, and LH-20 columns for targeted exploitation of chemical functionalities. E-SPE provides a minimum of fractions (15) for chemical and biological analyses and implicates development into a preparative scale methodology. Overall, this allows fast extract prioritization, easier dereplication, mapping of biological activities, and formulation of a purification strategy.


Asunto(s)
Bacterias , Productos Biológicos/aislamiento & purificación , Extracción en Fase Sólida/métodos , Bacterias/química , Bacterias/crecimiento & desarrollo , Productos Biológicos/análisis , Productos Biológicos/química , Productos Biológicos/economía , Productos Biológicos/farmacología , Cromatografía por Intercambio Iónico/métodos , Bases de Datos Factuales , Concentración de Iones de Hidrógeno , Estructura Molecular
16.
Mar Drugs ; 8(12): 2946-60, 2010 Dec 13.
Artículo en Inglés | MEDLINE | ID: mdl-21339958

RESUMEN

On a global research expedition, over 500 bacterial strains inhibitory towards pathogenic bacteria were isolated. Three hundred of the antibacterial strains were assigned to the Vibrionaceae family. The purpose of the present study was to investigate the phylogeny and bioactivity of five Vibrionaceae strains with pronounced antibacterial activity. These were identified as Vibrio coralliilyticus (two strains), V. neptunius (two strains), and Photobacterium halotolerans (one strain) on the basis of housekeeping gene sequences. The two related V. coralliilyticus and V. neptunius strains were isolated from distant oceanic regions. Chemotyping by LC-UV/MS underlined genetic relationships by showing highly similar metabolite profiles for each of the two V. coralliilyticus and V. neptunius strains, respectively, but a unique profile for P. halotolerans. Bioassay-guided fractionation identified two known antibiotics as being responsible for the antibacterial activity; andrimid (from V. coralliilyticus) and holomycin (from P. halotolerans). Despite the isolation of already known antibiotics, our findings show that marine Vibrionaceae are a resource of antibacterial compounds and may have potential for future natural product discovery.


Asunto(s)
Antibacterianos/farmacología , Lactamas/farmacología , Agua de Mar/microbiología , Vibrionaceae/química , Vibrionaceae/aislamiento & purificación , Antibacterianos/química , Antibacterianos/aislamiento & purificación , Antibiosis , Descubrimiento de Drogas , Lactamas/química , Lactamas/aislamiento & purificación , Lactamas/metabolismo , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Océanos y Mares , Photobacterium/química , Photobacterium/clasificación , Photobacterium/genética , Photobacterium/aislamiento & purificación , Filogenia , Polienos/química , Polienos/aislamiento & purificación , Polienos/metabolismo , Polienos/farmacología , Pirroles/química , Pirroles/aislamiento & purificación , Pirroles/metabolismo , Pirroles/farmacología , ARN Ribosómico 16S/genética , Staphylococcus aureus/efectos de los fármacos , Vibrio/química , Vibrio/clasificación , Vibrio/efectos de los fármacos , Vibrio/aislamiento & purificación , Vibrionaceae/clasificación , Vibrionaceae/genética
17.
Psychopharmacology (Berl) ; 235(5): 1533-1543, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29492615

RESUMEN

RATIONALE: GR3027 is a novel small molecule GABA-A receptor-modulating steroid antagonist, which in non-clinical studies has shown promise for treatment of human disorders due to allosteric over-activation of GABA-A receptors by neurosteroids, such as allopregnanolone. We here studied its safety, pharmacokinetics, and ability to inhibit allopregnanolone effects in humans. METHODS: Safety and pharmacokinetics were studied in healthy adult males receiving ascending single or multiple oral GR3027 vs. placebo. GR3027-mediated reversal of allopregnanolone effect on maximal saccadic eye velocity (SEV), and self-rated somnolence was studied in a double-blind, placebo-controlled, three-part cross-over study in which 3 or 30 mg oral GR3027 preceded 0.05 mg/kg of i.v. allopregnanolone. RESULTS: GR3027 was well tolerated, adverse events were generally mild and transient, and no dose-limiting toxicity or grade 3 adverse events were observed up to the highest single (200 mg) or multiple (100 mg every 12 h for 5 days) doses. The maximum concentration (Cmax) and systemic exposure (area under the plasma concentration-time curve from dose extrapolated to infinity [AUC0-∞] and/or AUC during the dosing interval [AUCτ]) varied linearly with dose; with dose-dependent accumulation ratios of 1.3-1.6. Allopregnanolone decreased SEV and induced somnolence in most, but not all subjects. By predefined analyses, 30 mg GR3027 significantly inhibited allopregnanolone-induced decrease in SEV (p = 0.03); 3 and 30 mg GR3027 non-significantly inhibited allopregnanolone-induced sedation. By post hoc analyses restricted to subjects with allopregnanolone-induced changes and the time period over which they occurred, GR3027 dose dependently inhibited allopregnanolone-induced decrease in SEV (p = 0.04 at 30 mg, non-significant at 3 mg) and allopregnanolone-induced sedation (p = 0.01/0.05 at 3/30 mg doses). CONCLUSION: Oral GR3027 mitigates inhibition of brain function induced by allopregnanolone at doses which are clinically well tolerated and associated with linear pharmacokinetics.


Asunto(s)
Encéfalo/fisiología , Antagonistas de Receptores de GABA-A/farmacología , Neurotransmisores/farmacología , Pregnanolona/farmacología , Receptores de GABA-A/fisiología , Adulto , Anestésicos/farmacología , Encéfalo/efectos de los fármacos , Estudios Cruzados , Relación Dosis-Respuesta a Droga , Método Doble Ciego , Humanos , Masculino , Neurotransmisores/antagonistas & inhibidores , Pregnanolona/antagonistas & inhibidores , Movimientos Sacádicos/efectos de los fármacos , Movimientos Sacádicos/fisiología , Vigilia/efectos de los fármacos , Vigilia/fisiología , Adulto Joven
18.
Front Microbiol ; 7: 1461, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27695447

RESUMEN

It has previously been reported that some strains of the marine bacterium Pseudoalteromonas luteoviolacea produce the purple bioactive pigment violacein as well as the antibiotic compound indolmycin, hitherto only found in Streptomyces. The purpose of the present study was to determine the relative role of each of these two compounds as antibacterial compounds in P. luteoviolacea S4054. Using Tn10 transposon mutagenesis, a mutant strain that was significantly reduced in violacein production in mannose-containing substrates was created. Full genome analyses revealed that the vio-biosynthetic gene cluster was not interrupted by the transposon; instead the insertion was located to the maeA gene encoding the malic enzyme. Supernatant of the mutant strain inhibited Vibrio anguillarum and Staphylococcus aureus in well diffusion assays and in MIC assays at the same level as the wild type strain. The mutant strain killed V. anguillarum in co-culture experiments as efficiently as the wild type. Using UHPLC-UV/Vis analyses, we quantified violacein and indolmycin, and the mutant strain only produced 7-10% the amount of violacein compared to the wild type strain. In contrast, the amount of indolmycin produced by the mutant strain was about 300% that of the wild type. Since inhibition of V. anguillarum and S. aureus by the mutant strain was similar to that of the wild type, it is concluded that violacein is not the major antibacterial compound in P. luteoviolacea. We furthermore propose that production of violacein and indolmycin may be metabolically linked and that yet unidentified antibacterial compound(s) may be play a role in the antibacterial activity of P. luteoviolacea.

19.
Genome Announc ; 2(3)2014 Jun 12.
Artículo en Inglés | MEDLINE | ID: mdl-24926051

RESUMEN

We report here the whole draft genome sequence of marine isolate Photobacterium halotolerans S2753, which produces the known antibiotic holomycin and also ngercheumicins and solonamides A and B, which interfere with virulence of methicillin-resistant Staphylococcus aureus strains by interacting with the quorum-sensing system.

20.
PLoS One ; 9(1): e84992, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24416329

RESUMEN

Methicillin-resistant Staphylococcus aureus (MRSA) continues to be a serious human pathogen, and particularly the spread of community associated (CA)-MRSA strains such as USA300 is a concern, as these strains can cause severe infections in otherwise healthy adults. Recently, we reported that a cyclodepsipeptide termed Solonamide B isolated from the marine bacterium, Photobacterium halotolerans strongly reduces expression of RNAIII, the effector molecule of the agr quorum sensing system. Here we show that Solonamide B interferes with the binding of S. aureus autoinducing peptides (AIPs) to sensor histidine kinase, AgrC, of the agr two-component system. The hypervirulence of USA300 has been linked to increased expression of central virulence factors like α-hemolysin and the phenol soluble modulins (PSMs). Importantly, in strain USA300 Solonamide B dramatically reduced the activity of α-hemolysin and the transcription of psma encoding PSMs with an 80% reduction in toxicity of supernatants towards human neutrophils and rabbit erythrocytes. To our knowledge this is the first report of a compound produced naturally by a Gram-negative marine bacterium that interferes with agr and affects both RNAIII and AgrA controlled virulence gene expression in S. aureus.


Asunto(s)
Regulación Bacteriana de la Expresión Génica , Staphylococcus aureus Resistente a Meticilina/efectos de los fármacos , Neutrófilos/microbiología , Péptidos Cíclicos/farmacología , Percepción de Quorum/efectos de los fármacos , Animales , Proteínas Bacterianas/antagonistas & inhibidores , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Toxinas Bacterianas/antagonistas & inhibidores , Toxinas Bacterianas/genética , Toxinas Bacterianas/metabolismo , Eritrocitos/efectos de los fármacos , Eritrocitos/microbiología , Proteínas Hemolisinas/antagonistas & inhibidores , Proteínas Hemolisinas/genética , Proteínas Hemolisinas/metabolismo , Humanos , Staphylococcus aureus Resistente a Meticilina/genética , Staphylococcus aureus Resistente a Meticilina/patogenicidad , Neutrófilos/efectos de los fármacos , Péptidos Cíclicos/aislamiento & purificación , Photobacterium/química , Cultivo Primario de Células , Proteínas Quinasas/genética , Proteínas Quinasas/metabolismo , Percepción de Quorum/genética , Conejos , Transactivadores/antagonistas & inhibidores , Transactivadores/genética , Transactivadores/metabolismo , Virulencia
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