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1.
Theor Appl Genet ; 132(5): 1523-1542, 2019 May.
Artículo en Inglés | MEDLINE | ID: mdl-30734114

RESUMEN

KEY MESSAGE: Silage quality traits of maize hybrids between the Dent and Flint heterotic groups mostly involved QTL specific of each parental group, some of them showing unfavorable pleiotropic effects on yield. Maize (Zea mays L.) is commonly used as silage for cattle feeding in Northern Europe. In addition to biomass production, improving whole-plant digestibility is a major breeding objective. To identify loci involved in the general (GCA, parental values) and specific combining ability (SCA, cross-specific value) components of hybrid value, we analyzed an incomplete factorial design of 951 hybrids obtained by crossing inbred lines issued from two multiparental connected populations, each specific to one of the heterotic groups used for silage in Europe ("Dent" and "Flint"). Inbred lines were genotyped for approximately 20K single nucleotide polymorphisms, and hybrids were phenotyped in eight environments for seven silage quality traits measured by near-infrared spectroscopy, biomass yield and precocity (partly analyzed in a previous study). We estimated variance components for GCA and SCA and their interaction with environment. We performed QTL detection using different models adapted to this hybrid population. Strong family effects and a predominance of GCA components compared to SCA were found for all traits. In total, 230 QTL were detected, with only two showing SCA effects significant at the whole-genome level. More than 80% of GCA QTL were specific of one heterotic group. QTL explained individually less than 5% of the phenotypic variance. QTL co-localizations and correlation between QTL effects of quality and productivity traits suggest at least partial pleiotropic effects. This work opens new prospects for improving maize hybrid performances for both biomass productivity and quality accounting for complementarities between heterotic groups.


Asunto(s)
Sitios de Carácter Cuantitativo , Zea mays/genética , Mapeo Cromosómico , Hibridación Genética , Zea mays/crecimiento & desarrollo
2.
Molecules ; 24(21)2019 Oct 28.
Artículo en Inglés | MEDLINE | ID: mdl-31661930

RESUMEN

The aim of this article is to provide an analysis of microwave effects on ferulic and coumaric acids (FA and CA, respectively) extraction from grass biomass (corn stalks and miscanthus). Microwave pretreatment using various solvents was first compared to conventional heating on corn stalks. Then, microwave operational conditions were extended in terms of incident power and treatment duration. Optimal conditions were chosen to increase p-hydroxycinnamic acids release. Finally, these optimal conditions determined on corn stalks were tested on miscanthus stalks to underlie the substrate incidence on p-hydroxycinnamic acids release yields. The optimal conditions-a treatment duration of 405 s under 1000 W-allowed extracting 1.38% FA and 1.97% CA in corn stalks and 0.58% FA and 3.89% CA in miscanthus stalks. The different bioaccessibility of these two molecules can explain the higher or lower yields between corn and miscanthus stalks.


Asunto(s)
Ácidos Cumáricos/aislamiento & purificación , Microondas , Poaceae/química , Biomasa , Celulosa/química , Ácidos Cumáricos/química , Ácidos Cumáricos/efectos de la radiación , Hidrólisis , Lignina/química , Extractos Vegetales/química , Extractos Vegetales/efectos de la radiación , Zea mays/química
3.
Theor Appl Genet ; 126(5): 1151-65, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23358861

RESUMEN

Several QTLs for cell wall degradability and lignin content were previously detected in the F288 × F271 maize RIL progeny, including a set of major QTLs located in bin 6.06. Unexpectedly, allelic sequencing of genes located around the bin 6.06 QTL positions revealed a monomorphous region, suggesting that these QTLs were likely "ghost" QTLs. Refining the positions of all QTLs detected in this population was thus considered, based on a linkage map densification in most important QTL regions, and in several large still unmarked regions. Re-analysis of data with an improved genetic map (173 markers instead of 108) showed that ghost QTLs located in bin 6.06 were then fractionated over two QTL positions located upstream and downstream of the monomorphic region. The area located upstream of bin 6.06 position carried the major QTLs, which explained from 37 to 59 % of the phenotypic variation for per se values and extended on only 6 cM, corresponding to a physical distance of 2.2 Mbp. Among the 92 genes present in the corresponding area of the B73 maize reference genome, nine could putatively be considered as involved in the formation of the secondary cell wall [bHLH, FKBP, laccase, fasciclin, zinc finger C2H2-type and C3HC4-type (two genes), NF-YB, and WRKY]. In addition, based on the currently improved genetic map, eight QTLs were detected in bin 4.09, while only one QTL was highlighted in the initial investigation. Moreover, significant epistatic interaction effects were shown for all traits between these QTLs located in bin 4.09 and the major QTLs located in bin 6.05. Three genes related to secondary cell wall assembly (ZmMYB42, COV1-like, PAL-like) underlay QTL support intervals in this newly identified bin 4.09 region. The current investigations, even if they were based only on one RIL progeny, illustrated the interest of a targeted marker mapping on a genetic map to improve QTL position.


Asunto(s)
Pared Celular/genética , Mapeo Cromosómico , Genes de Plantas/genética , Ligamiento Genético , Sitios de Carácter Cuantitativo , Zea mays/genética , Cromosomas de las Plantas , Repeticiones de Microsatélite , Fenotipo
4.
Front Plant Sci ; 14: 1142462, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-36998698

RESUMEN

Introduction: With dwindling global freshwater supplies and increasing water stress, agriculture is coming under increasing pressure to reduce water use. Plant breeding requires high analytical capabilities. For this reason, near-infrared spectroscopy (NIRS) has been used to develop prediction equations for whole-plant samples, particularly for predicting dry matter digestibility, which has a major impact on the energy value of forage maize hybrids and is required for inclusion in the official French catalogue. Although the historical NIRS equations have long been used routinely in seed company breeding programmes, they do not predict all variables with the same accuracy. In addition, little is known about how accurate their predictions are under different water stress-environments. Methods: Here, we examined the effects of water stress and stress intensity on agronomic, biochemical, and NIRS predictive values in a set of 13 modern S0-S1 forage maize hybrids under four different environmental conditions resulting from the combination of a northern and southern location and two monitored water stress levels in the south. Results: First, we compared the reliability of NIRS predictions for basic forage quality traits obtained using the historical NIRS predictive equations and the new equations we recently developed. We found that NIRS predicted values were affected to varying degrees by environmental conditions. We also showed that forage yield gradually decreased as a function of water stress, whereas both dry matter and cell wall digestibilities increased regardless of the intensity of water stress, with variability among the tested varieties decreasing under the most stressed conditions. Discussion: By combining forage yield and dry matter digestibility, we were able to quantify digestible yield and identify varieties with different strategies for coping with water stress, raising the exciting possibility that important potential selection targets still exist. Finally, from a farmer's perspective, we were able to show that late silage harvest has no effect on dry matter digestibility and that moderate water stress does not necessarily result in a loss of digestible yield.

5.
Theor Appl Genet ; 125(3): 531-49, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22437492

RESUMEN

In order to contribute to the inventory of genomic areas involved in maize cell wall lignification and degradability, QTL analyses were investigated in a RIL progeny between an old Minnesota13 dent line (WM13) and a modern Iodent line (RIo). Significant variation for agronomic- and cell wall-related traits was observed for the RIL per se (plants without ears) and topcross (whole plants) experiments after crossing with both old (Ia153) and modern tester (RFl) lines. Three QTLs for stover (plant without ear) yield were observed in per se experiments, with alleles increasing yield originating from RIo in two genomic locations with the highest effects. However, no QTL for whole plant yield was detected in topcross experiments, despite the fact that two QTLs for starch content were shown with increasing alleles originating from the modern RIo line. Fifteen lignin QTLs were shown, including a QTL for Klason lignins in per se experiments, located in bin 2.04, which explained 43 % of the observed genetic variation. Thirteen QTLs for p-hydroxycinnamic acid contents and nine QTLs related to the monomeric composition of lignin were shown in per se experiments, with syringaldehyde and diferulate QTLs explaining nearly 25 % of trait variations. Nine and seven QTLs for cell wall digestibility were mapped in per se and topcross experiments, respectively. Five of the per se QTLs explained more than 15 % of the variation, up to nearly 25 %. QTL positions in bins 2.06, 5.04, 5.08 and 8.02 for ADL/NDF, IVNDFD, lignin structure and/or p-hydroxycinnamic acid contents have not been previously shown and were thus first identified in the RIo × WM13 progeny. Based on QTL colocalizations, differences in cell wall degradability between RIo and WM13 were less often related to acid detergent lignin (ADL) content than in previous RIL investigations. QTL colocalizations then highlighted the probable importance of ferulate cross linkages in variation for cell wall digestibility. No colocalizations of QTL for cell wall phenolic-related traits were shown with genes involved in monolignol biosynthesis or polymerization. In contrast, colocalizations were most often shown with MYB and NAC transcription factors, including orthologs of master genes involved in Arabidopsis secondary wall assembly. QTL colocalizations also strengthened the probable involvement of members of the CoA-dependent acyltransferase PF02458 family in the feruloylation of arabinoxylan chains.


Asunto(s)
Pared Celular/química , Cruzamientos Genéticos , Genes de Plantas , Sitios de Carácter Cuantitativo , Zea mays/citología , Zea mays/genética , Arabidopsis/genética , Arabidopsis/metabolismo , Carbohidratos/análisis , Carbohidratos/química , Pared Celular/genética , Mapeo Cromosómico , Cromosomas de las Plantas/genética , Cromosomas de las Plantas/metabolismo , Ácidos Cumáricos/análisis , Ácidos Cumáricos/química , Ligamiento Genético , Variación Genética , Lignina/análisis , Lignina/química , Lignina/genética , Fenotipo , Propionatos , Factores de Transcripción , Zea mays/metabolismo
6.
Biotechnol Biofuels ; 14(1): 164, 2021 Jul 31.
Artículo en Inglés | MEDLINE | ID: mdl-34332625

RESUMEN

BACKGROUND: Biomass recalcitrance is governed by various molecular and structural factors but the interplay between these multiscale factors remains unclear. In this study, hot water pretreatment (HWP) was applied to maize stem internodes to highlight the impact of the ultrastructure of the polymers and their interactions on the accessibility and recalcitrance of the lignocellulosic biomass. The impact of HWP was analysed at different scales, from the polymer ultrastructure or water mobility to the cell wall organisation by combining complementary compositional, spectral and NMR analyses. RESULTS: HWP increased the kinetics and yield of saccharification. Chemical characterisation showed that HWP altered cell wall composition with a loss of hemicelluloses (up to 45% in the 40-min HWP) and of ferulic acid cross-linking associated with lignin enrichment. The lignin structure was also altered (up to 35% reduction in ß-O-4 bonds), associated with slight depolymerisation/repolymerisation depending on the length of treatment. The increase in [Formula: see text], [Formula: see text] and specific surface area (SSA) showed that the cellulose environment was looser after pretreatment. These changes were linked to the increased accessibility of more constrained water to the cellulose in the 5-15 nm pore size range. CONCLUSION: The loss of hemicelluloses and changes in polymer structural features caused by HWP led to reorganisation of the lignocellulose matrix. These modifications increased the SSA and redistributed the water thereby increasing the accessibility of cellulases and enhancing hydrolysis. Interestingly, lignin content did not have a negative impact on enzymatic hydrolysis but a higher lignin condensed state appeared to promote saccharification. The environment and organisation of lignin is thus more important than its concentration in explaining cellulose accessibility. Elucidating the interactions between polymers is the key to understanding LB recalcitrance and to identifying the best severity conditions to optimise HWP in sustainable biorefineries.

7.
Front Plant Sci ; 12: 628960, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33719300

RESUMEN

Maize feeding value is strongly linked to plant digestibility. Cell wall composition and structure can partly explain cell wall digestibility variations, and we recently showed that tissue lignification and lignin spatial distribution also contribute to cell wall digestibility variations. Although the genetic determinism of digestibility and cell wall composition has been studied for more than 20 years, little is available concerning that of tissue lignification. Moreover, maize yield is negatively impacted by water deficit, and we newly highlighted the impact of water deficit on cell wall digestibility and composition together with tissue lignification. Consequently, the aim of this study was to explore the genetic mechanisms of lignin distribution in link with cell wall composition and digestibility under contrasted water regimes. Maize internodes from a recombinant inbred line (RIL) population grown in field trials with contrasting irrigation scenarios were biochemically and histologically quantified. Results obtained showed that biochemical and histological traits have different response thresholds to water deficit. Histological profiles were therefore only modified under pronounced water deficit, while most of the biochemical traits responded whatever the strength of the water deficit. Three main clusters of quantitative trait locus (QTL) for histological traits were detected. Interestingly, overlap between the biochemical and histological clusters is rare, and one noted especially colocalizations between histological QTL/clusters and QTL for p-coumaric acid content. These findings reinforce the suspected role of tissue p-coumaroylation for both the agronomic properties of plants as well as their digestibility.

8.
Plant Mol Biol ; 72(1-2): 215-34, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19902151

RESUMEN

Previous work has shown that transgenic tobacco plants constitutively over-expressing the Vitis vinifera L. transcription factor VvWRKY2 exhibit reduced susceptibility to necrotrophic fungal pathogens, suggesting that this transcription factor plays a role in grapevine response to phytopathogens. The work presented here characterizes the modifications in cell wall structure observed in the stems and petioles of these transgenic plants. Histochemical stainings of stem and petiole cross-sections using phloroglucinol or Maüle reagents revealed a delay in xylem formation, particularly in the petioles, and differences in lignin composition. Evaluation of lignin quantity and quality showed a decrease in the syringyl/guaiacyl ratio in both stem and petioles. Expression analysis using RT-PCR and potato microarrays showed that tobacco plants over-expressing VvWRKY2 exhibited altered expression of genes involved in lignin biosynthesis pathway and cell wall formation. The ability of VvWRKY2 to activate the promoter of the VvC4H gene, which is involved in the lignin biosynthetic pathway, was confirmed by transient transcriptional activation assays in tobacco protoplasts. Moreover, in situ hybridization revealed that VvWRKY2 is specifically expressed in cells undergoing lignification in young grapevine stems. Together, these results confirm that VvWRKY2 plays a role in regulating lignification in grapevine, possibly in response to biotic or abiotic stresses.


Asunto(s)
Lignina/biosíntesis , Nicotiana/crecimiento & desarrollo , Nicotiana/metabolismo , Proteínas de Plantas/fisiología , Factores de Transcripción/fisiología , Vitis/genética , Xilema/crecimiento & desarrollo , Hibridación in Situ , Análisis de Secuencia por Matrices de Oligonucleótidos , Proteínas de Plantas/genética , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/crecimiento & desarrollo , Plantas Modificadas Genéticamente/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Nicotiana/genética , Factores de Transcripción/genética , Xilema/genética , Xilema/metabolismo
9.
Data Brief ; 32: 106264, 2020 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-32984461

RESUMEN

This dataset presents 127 raw near infrared spectra of different organic samples acquired on three different spectrometers in three different labs. An example of data processing is shown to create six spectra transfer models between the three spectrometers (two by two). In order to build and validate these transfer models, the dataset was split into two sets of spectra: a first set was used to compute six spectra transfer models thanks to the Piecewise Direct standardisation function (PDS). A second set of spectra, independent of the first one was used to validate transfer models. Spectrum treatments and models were created on ChemFlow (https://vm-chemflow-francegrille.eu/), a free online chemometric software that includes all the necessary functions.

10.
PLoS One ; 14(7): e0219923, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31361770

RESUMEN

Plant cell walls development is an integrated process during which several components are deposited successively. In the cell walls in grass, the accessibility of structural polysaccharides is limited by the cell walls structure and composition mainly as a result of phenolic compounds. Here, we studied the patterns of cell walls establishment in the internode supporting the ear in three distinct maize genotypes. The developmental patterns observed in the internode cell walls in terms of its composition are reported with an emphasis on lignification, p-coumaroylation and feruloylation. We combined biochemical and histological approaches and revealed that internode cell walls development in maize before flowering is characterized by the rapid deposition of secondary cell walls components and robust lignification in both the pith and the rind. After flowering and until silage maturity, the slow deposition of secondary walls components occurs in the cortical region, and the deposited lignins are rich in ß-O-4 bonds and are highly p-coumaroylated. We conclude the paper by proposing a revised spatiotemporal model based on that proposed by Terashima et al. (1993) for cell walls development in grass.


Asunto(s)
Ácidos Cumáricos/química , Lignina/química , Propionatos/química , Zea mays/crecimiento & desarrollo , Pared Celular/química , Genotipo , Endogamia , Extractos Vegetales/química , Distribución Tisular , Zea mays/química , Zea mays/genética
11.
PLoS One ; 14(12): e0227011, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31891625

RESUMEN

Understanding the mechanisms triggering variation of cell wall degradability is a prerequisite to improving the energy value of lignocellulosic biomass for animal feed or biorefinery. Here, we implemented a multiscale systems approach to shed light on the genetic basis of cell wall degradability in maize. We demonstrated that allele replacement in two pairs of near-isogenic lines at a region encompassing a major quantitative trait locus (QTL) for cell wall degradability led to phenotypic variation of a similar magnitude and sign to that expected from a QTL analysis of cell wall degradability in the F271 × F288 recombinant inbred line progeny. Using DNA sequences within the QTL interval of both F271 and F288 inbred lines and Illumina RNA sequencing datasets from internodes of the selected near-isogenic lines, we annotated the genes present in the QTL interval and provided evidence that allelic variation at the introgressed QTL region gives rise to coordinated changes in gene expression. The identification of a gene co-expression network associated with cell wall-related trait variation revealed that the favorable F288 alleles exploit biological processes related to oxidation-reduction, regulation of hydrogen peroxide metabolism, protein folding and hormone responses. Nested in modules of co-expressed genes, potential new cell-wall regulators were identified, including two transcription factors of the group VII ethylene response factor family, that could be exploited to fine-tune cell wall degradability. Overall, these findings provide new insights into the regulatory mechanisms by which a major locus influences cell wall degradability, paving the way for its map-based cloning in maize.


Asunto(s)
Alimentación Animal , Pared Celular/metabolismo , Redes Reguladoras de Genes , Sitios de Carácter Cuantitativo , Zea mays/genética , Alelos , Pared Celular/genética , Celulosa/metabolismo , Mapeo Cromosómico , Conjuntos de Datos como Asunto , Genoma de Planta , Peróxido de Hidrógeno/metabolismo , Lignina/metabolismo , Oxidación-Reducción , Fitomejoramiento , Plantas Modificadas Genéticamente , Pliegue de Proteína , RNA-Seq , Biología de Sistemas , Zea mays/citología
12.
Front Plant Sci ; 10: 488, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31105719

RESUMEN

The use of lignocellulosic biomass for animal feed or biorefinery requires the optimization of its degradability. Moreover, biomass crops need to be better adapted to the changing climate and in particular to periods of drought. Although the negative impact of water deficit on biomass yield has often been mentioned, its impact on biomass quality has only been recently reported in a few species. In the present study, we combined the mapping power of a maize recombinant inbred line population with robust near infrared spectroscopy predictive equations to track the response to water deficit of traits associated with biomass quality. The population was cultivated under two contrasted water regimes over 3 consecutive years in the south of France and harvested at silage stage. We showed that cell wall degradability and ß-O-4-linked H lignin subunits were increased in response to water deficit, while lignin and p-coumaric acid contents were reduced. A mixed linear model was fitted to map quantitative trait loci (QTLs) for agronomical and cell wall-related traits. These QTLs were categorized as "constitutive" (QTL with an effect whatever the irrigation condition) or "responsive" (QTL involved in the response to water deficit) QTLs. Fifteen clusters of QTLs encompassed more than two third of the 213 constitutive QTLs and 13 clusters encompassed more than 60% of the 149 responsive QTLs. Interestingly, we showed that only half of the responsive QTLs co-localized with constitutive and yield QTLs, suggesting that specific genetic factors support biomass quality response to water deficit. Overall, our results demonstrate that water deficit favors cell wall degradability and that breeding of varieties that reconcile improved drought-tolerance and biomass degradability is possible.

13.
C R Biol ; 331(10): 772-9, 2008 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-18926491

RESUMEN

A combined transcriptomic, proteomic and metabolic analysis provided an overview of the main changes occurring in gene expression during maize kernel development. It allowed identifying genes expressed at each developmental stage and the shift occurring from one stage to the other. A major change occurred at the transition from lag phase where final grain size is established to grain filling where starch and protein are accumulated in the endosperm storage tissue. Although the expression of enzymes involved in storage product synthesis is dominant in the accumulation phase, the proportion of protein destination and protein synthesis gene products is still important. Detailed proteomic analysis of metabolism shows an upsurge of the pyruvate-Pi-dikinase (PPDK) in the late filing period (21 DAP onwards) that is interpreted as a switch in the starch/protein balance. This hypothesis is based on biochemical arguments involving the negative effect of PPi on the ADP-glucose pyrophosphorylase (Agpase), a key-enzyme of starch synthesis, and the role of phosphoenolpyruvate (PEP) in aromatic amino acid synthesis. It is substantiated by the data on the Opaque-2 gene encoding a transcription factor with pleiotropic effect affecting lysine content and carbohydrate metabolism, thus acting indirectly on starch/amino acid ratio. The direct effect of O2 on PPDK gene expression provides a clue for explaining the competition between C and N metabolisms. This epistatic relationship between PPDK and O2 is further supported by quantitative and association genetics.


Asunto(s)
Carbono/metabolismo , Proteínas de Unión al ADN/fisiología , Nitrógeno/metabolismo , Proteínas de Plantas/fisiología , Piruvato Ortofosfato Diquinasa/fisiología , Semillas/metabolismo , Factores de Transcripción/fisiología , Zea mays/metabolismo , Aminoácidos/metabolismo , Metabolismo Energético/genética , Epistasis Genética , Perfilación de la Expresión Génica , Regulación del Desarrollo de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genes de Plantas , Proteoma , Semillas/genética , Semillas/crecimiento & desarrollo , Almidón/metabolismo , Sacarosa/metabolismo , Zea mays/genética
14.
Phytochemistry ; 68(4): 571-9, 2007 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-17187834

RESUMEN

The objective of this study was to assess the influence of the peroxidase/coniferyl alcohol (CA) ratio on the dehydrogenation polymer (DHP) synthesis. The soluble and unsoluble fractions of horseradish peroxidase (HRP)-catalyzed CA dehydrogenation mixtures were recovered in various proportions, depending on the polymerization mode (Zutropf ZT/Zulauf ZL) and HRP/CA ratio (1.6-1100purpurogallin U mmol(-1)). The ZL mode yielded 0-57%/initial CA of unsoluble condensed DHPs (thioacidolysis yields <200micromolg(-1)) with a proportion of uncondensed CA end groups increasing with the HRP/CA ratio (7.2-55.5%/total uncondensed CA). Systematically lower polymer yields (0-49%/initial CA) were obtained for the ZT mode. In that mode, a negative correlation was established between the beta-O-4 content (thioacidolysis yields: 222-660micromolg(-1)) and the HRP/CA ratio. In both modes, decreasing the HRP/CA ratio below 18Ummol(-1) favoured an end-wise polymerization process evidenced by the occurrence of tri-, tetra- and pentamers involving at least one beta-O-4 bond. At low ratio, the unsoluble ZT DHP was found to better approximate natural lignins than DHPs previously synthesized with traditional methods. Besides its possible implication in lignin biosynthesis, peroxidase activity is a crucial parameter accounting for the structural variations of in vitro DHPs.


Asunto(s)
Peroxidasa de Rábano Silvestre/metabolismo , Lignina/química , Lignina/metabolismo , Benzocicloheptenos/metabolismo , Cromatografía Liquida , Cinética , Espectrometría de Masas , Oxidación-Reducción
15.
Methods Mol Biol ; 355: 1-8, 2007.
Artículo en Inglés | MEDLINE | ID: mdl-17093296

RESUMEN

We describe a procedure allowing extraction of total proteins that performs efficiently with a large variety of plant tissues, based on simultaneous precipitation and denaturation with TCA and 2ME in cold acetone. We also describe protein solubilization prior to IEF, either in classical rod gels or in IPGs, using two different solutions. The procedure is easy to carry out. The major caveats are (1) keep samples at low temperature during extraction, and then (2) manage protein samples at about 22 to 25 degrees C to avoid urea precipitation.


Asunto(s)
Acetona/química , Proteínas de Plantas/aislamiento & purificación , Proteómica/métodos , Ácido Tricloroacético/química , Precipitación Química , Detergentes/química , Proteínas de Plantas/química , Plantas/química , Solubilidad , Temperatura
16.
Plant Methods ; 13: 84, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29118822

RESUMEN

BACKGROUND: Crop species are of increasing interest both for cattle feeding and for bioethanol production. The degradability of the plant material largely depends on the lignification of the tissues, but it also depends on histological features such as the cellular morphology or the relative amount of each tissue fraction. There is therefore a need for high-throughput phenotyping systems that quantify the histology of plant sections. RESULTS: We developed custom image processing and an analysis procedure for quantifying the histology of maize stem sections coloured with FASGA staining and digitalised with whole microscopy slide scanners. The procedure results in an automated segmentation of the input images into distinct tissue regions. The size and the fraction area of each tissue region can be quantified, as well as the average coloration within each region. The measured features can discriminate contrasted genotypes and identify changes in histology induced by environmental factors such as water deficit. CONCLUSIONS: The simplicity and the availability of the software will facilitate the elucidation of the relationships between the chemical composition of the tissues and changes in plant histology. The tool is expected to be useful for the study of large genetic populations, and to better understand the impact of environmental factors on plant histology.

17.
J Agric Food Chem ; 53(15): 5872-81, 2005 Jul 27.
Artículo en Inglés | MEDLINE | ID: mdl-16028968

RESUMEN

Grass cell wall degradability is conventionally related to the lignin content and to the ferulic-mediated cross-linking of lignins to polysaccharides. To better understand the variations in degradability, 22 maize inbred lines were subjected to image analyses of Fasga- and Mäule-stained stem sections and to chemical analyses of lignins and p-hydroxycinnamic acids. For the first time, the nearness of biochemical and histological estimates of lignin levels was established. Combination of histological and biochemical traits could explain 89% of the variations for cell wall degradability and define a maize ideotype for cell wall degradability. In addition to a reduced lignin level, such an ideotype would contain lignins richer in syringyl than in guaiacyl units and preferentially localized in the cortical region rather than in the pith. Such enrichment in syringyl units would favor wall degradability in grasses, contrary to dicots, and could be related to the fact that grass syringyl units are noticeably p-coumaroylated. This might affect the interaction capabilities of lignins and polysaccharides.


Asunto(s)
Pared Celular/química , Pared Celular/metabolismo , Lignina/análisis , Zea mays/ultraestructura , Cruzamiento , Variación Genética , Zea mays/química , Zea mays/genética
18.
Phytochemistry ; 65(11): 1609-18, 2004 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-15276456

RESUMEN

We have established a proteome reference map for maize (Zea mays L.) endosperm by means of two-dimensional gel electrophoresis and protein identification with LC-MS/MS analysis. This investigation focussed on proteins in major spots in a 4-7 pI range and 10-100 kDa M(r) range. Among the 632 protein spots processed, 496 were identified by matching against the NCBInr and ZMtuc-tus databases (using the SEQUEST software). Forty-two per cent of the proteins were identified against maize sequences, 23% against rice sequences and 21% against Arabidopsis sequences. Identified proteins were not only cytoplasmic but also nuclear, mitochondrial or amyloplastic. Metabolic processes, protein destination, protein synthesis, cell rescue, defense, cell death and ageing are the most abundant functional categories, comprising almost half of the 632 proteins analyzed in our study. This proteome map constitutes a powerful tool for physiological studies and is the first step for investigating the maize endosperm development.


Asunto(s)
Proteoma/análisis , Zea mays/metabolismo , Electroforesis en Gel Bidimensional/métodos , Espectrometría de Masas , Peso Molecular , Mapeo Peptídico/métodos , Proteínas de Plantas/análisis , Proteínas de Plantas/metabolismo , Zea mays/genética , Zea mays/crecimiento & desarrollo
19.
C R Biol ; 327(9-10): 847-60, 2004.
Artículo en Inglés | MEDLINE | ID: mdl-15587076

RESUMEN

The brown-midrib mutants of maize have a reddish-brown pigmentation of the leaf midrib and stalk pith, associated with lignified tissues. These mutants progressively became models for lignification genetics and biochemical studies in maize and grasses. Comparisons at silage maturity of bm1, bm2, bm3, bm4 plants highlighted their reduced lignin, but also illustrated the biochemical specificities of each mutant in p-coumarate, ferulate ester and etherified ferulate content, or syringyl/guaiacyl monomer ratio after thioacidolysis. Based on the current knowledge of the lignin pathway, and based on presently developed data and discussions, C3H and CCoAOMT activities are probably major hubs in controlling cell-wall lignification (and digestibility). It is also likely that ferulates arise via the CCoAOMT pathway.


Asunto(s)
Pared Celular/metabolismo , Mutación , Zea mays/genética , Zea mays/metabolismo , Ácidos Cumáricos/metabolismo , Variación Genética , Lignina/química , Lignina/metabolismo , Metiltransferasas/genética , Zea mays/ultraestructura
20.
J Agric Food Chem ; 62(22): 5102-7, 2014 Jun 04.
Artículo en Inglés | MEDLINE | ID: mdl-24823698

RESUMEN

We have investigated the impact of the brown-midrib bm5 mutation on lignins and on p-coumaric acid and ferulic acid ester-linked to maize (Zea mays L.) cell walls. Lignified stalks or plant aerial parts (without ears) collected at grain maturity were studied in three genetic backgrounds. Relative to the control, bm5 mutants displayed lower levels of lignins and of p-coumarate esters but increased levels of ferulate esters. Thioacidolysis revealed that bm5 lignins display an increased frequency of free-phenolic guaiacyl units. More importantly, thioacidolysis provided unusual amounts of 1,2,2-trithioethyl ethylguaiacol, a marker compound diagnostic for the incorporation of free ferulic acid into lignins by bis 8-O-4 cross-coupling. As the resulting acetal bonding pattern is a chemically labile branch point introduced in maize lignins by the bm5 mutation, this alteration is prone to facilitate the delignification pretreatments used in the cellulose-to-ethanol process.


Asunto(s)
Lignina/metabolismo , Proteínas de Plantas/genética , Zea mays/metabolismo , Ácidos Cumáricos/metabolismo , Lignina/química , Mutación , Proteínas de Plantas/metabolismo , Propionatos , Semillas/química , Semillas/crecimiento & desarrollo , Semillas/metabolismo , Zea mays/química , Zea mays/genética , Zea mays/crecimiento & desarrollo
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