DNA metabarcoding reveals high relative abundance of trunk disease fungi in grapevines from Marlborough, New Zealand.

Grapevine trunk diseases (GTDs) are a threat to grape production worldwide, with a diverse collection of fungal species implicated in disease onset. Due to the long-term and complex nature of GTDs, simultaneous detection of multiple microbial species can enhance understanding of disease development. We used DNA metabarcoding of ribosomal internal transcribed spacer 1 (ITS1) sequences, supported by specific PCR and microbial isolation, to establish the presence of trunk pathogens across 11 vineyards (11-26 years old) over three years in Marlborough, the largest wine producing region in New Zealand. Using a reference database of trunk pathogen sequences, species previously associated with GTD, such as Cadophora luteo-olivacea, Diplodia seriata, Diplodia mutila, Neofusicoccum australe, and Seimatosporium vitis, were identified as highly represented across the vineyard region. The well-known pathogens Phaeomoniella chlamydospora and Eutypa lata had especially high relative abundance across the dataset, with P. chlamydospora reads present between 22 and 84% (average 52%) across the vineyards. Screening of sequences against broader, publicly available databases revealed further fungal species within families and orders known to contain pathogens, many of which appeared to be endemic to New Zealand. The presence of several wood-rotting basidiomycetes (mostly Hymenochaetales) was detected for the first time in the Marlborough vineyard region, notably, the native Inonotus nothofagii which was present at 1-2% relative abundance in two vineyards.

Pruning Wound Protection Strategies for Simultaneous Control of Eutypa and Botryosphaeria Dieback in New Zealand.

The grapevine trunk diseases Eutypa and Botryosphaeria dieback threaten the sustainability of vineyards worldwide. This study aimed to develop practical and efficient wound protection strategies, which will lead to widespread adoption of preventative control for these diseases and increased longevity of vineyards. Five fungicides (tebuconazole, carbendazim, fluazinam, mancozeb, and flusilazole) were evaluated for efficacy against Eutypa lata and Neofusicoccum luteum infection on pruning wounds of 'Sauvignon blanc' in a New Zealand vineyard. All five fungicides controlled infection by both pathogens to varying degrees, with mean percent disease control of 70 to 90% for E. lata and 33 to 93% for N. luteum. This has led to the first known registration of a fungicide, fluazinam (Gem), for simultaneous control of both Eutypa and Botryosphaeria dieback. Furthermore, application of carbendazim with tractor-driven sprayers provided similar control of E. lata and N. luteum to that when applied by hand with a paintbrush. This constitutes the first report of Botryosphaeria dieback control with fungicides applied with tractor-driven sprayers.

Grapevines escaping trunk diseases in New Zealand vineyards have a distinct microbiome structure.

Grapevine trunk diseases (GTDs) are a substantial challenge to viticulture, especially with a lack of available control measures. The lack of approved fungicides necessitates the exploration of alternative controls. One promising approach is the investigation of disease escape plants, which remain healthy under high disease pressure, likely due to their microbiome function. This study explored the microbiome of grapevines with the disease escape phenotype. DNA metabarcoding of the ribosomal internal transcribed spacer 1 (ITS1) and 16S ribosomal RNA gene was applied to trunk tissues of GTD escape and adjacent diseased vines. Our findings showed that the GTD escape vines had a significantly different microbiome compared with diseased vines. The GTD escape vines consistently harbored a higher relative abundance of the bacterial taxa Pseudomonas and Hymenobacter. Among fungi, Aureobasidium and Rhodotorula were differentially associated with GTD escape vines, while the GTD pathogen, Eutypa, was associated with the diseased vines. This is the first report of the link between the GTD escape phenotype and the grapevine microbiome.