Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations.

A major goal in evolutionary biology is to understand how adaptive evolution has influenced natural variation, but identifying loci subject to positive selection has been a challenge. Here we present the adaptive loss of a pair of paralogous genes in specific Saccharomyces cerevisiae subpopulations. We mapped natural variation in freeze-thaw tolerance to two water transporters, AQY1 and AQY2, previously implicated in freeze-thaw survival. However, whereas freeze-thaw-tolerant strains harbor functional aquaporin genes, the set of sensitive strains lost aquaporin function at least 6 independent times. Several genomic signatures at AQY1 and/or AQY2 reveal low variation surrounding these loci within strains of the same haplotype, but high variation between strain groups. This is consistent with recent adaptive loss of aquaporins in subgroups of strains, leading to incipient balancing selection. We show that, although aquaporins are critical for surviving freeze-thaw stress, loss of both genes provides a major fitness advantage on high-sugar substrates common to many strains' natural niche. Strikingly, strains with non-functional alleles have also lost the ancestral requirement for aquaporins during spore formation. Thus, the antagonistic effect of aquaporin function-providing an advantage in freeze-thaw tolerance but a fitness defect for growth in high-sugar environments-contributes to the maintenance of both functional and nonfunctional alleles in S. cerevisiae. This work also shows that gene loss through multiple missense and nonsense mutations, hallmarks of pseudogenization presumed to emerge after loss of constraint, can arise through positive selection.

Measured laser-beam evolution during high-order harmonic generation in a semi-infinite gas cell.

We report on direct measurements of self-guiding of 800 nm, 30 fs, 5 mJ laser pulses used to generate high-order harmonics in 80 torr helium. We track the spatial evolution of the laser pulses as they propagate several centimeters near the focus under conditions suitable for harmonic generation. The laser is observed to focus, diverge, and refocus. This behavior is accompanied by a flattop beam profile. Both of these features are absent when the laser is focused in vacuum. We also observed a 4 nm spectral blue shift in the center of the laser beam near the focus in contrast with no spectral shift at wider radii.

Direct observation of laser filamentation in high-order harmonic generation.

We investigate the spatial evolution of a laser pulse used to generate high-order harmonics (orders ranging from 45 to 91) in a semi-infinite helium-filled gas cell. The 5 mJ, 30 fs laser pulses experience elongated focusing with two distinct waists when focused with f/125 optics in 80 Torr of helium. Extended phase matching for the generation of harmonics occurs in the region between the double foci of the laser, where the laser beam changes from diverging to converging.