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1.
World J Microbiol Biotechnol ; 36(12): 179, 2020 Nov 06.
Artículo en Inglés | MEDLINE | ID: mdl-33155123

RESUMEN

We previously identified specific proteins associated with ethanol stress response in a Lactobacillus buchneri strain capable of growing in 10% ethanol. In the current study, the exceptional roles of ethanol responsive genes are examined to determine if they can increase ethanol tolerance in E. coli host cells. The recombinant strains carrying ethanol responsive genes were subjected to growth analyses in media with and without 4% ethanol. Among the expression of these genes and growth analyses of the recombinant strains in ethanol, six genes Lbuc_0522 (NADPH-dependent methylglyoxal reductase), Lbuc_0354 (succinate semialdehyde dehydrogenase), Lbuc_1211(threonyl_tRNA synthetase), Lbuc_2051 (nitroreductase), Lbuc_0707 (branched chain amino acid aminotransferase) and Lbuc_1852 (proline-specific peptidase) conferred host cells tolerance to 4% ethanol. Six genes Lbuc_1523 (phage major capsid protein, HK 97 family), Lbuc_1319 (phosphoglycerate kinase), Lbuc_0787 encoding fumarylacetoacetate hydrolase, Lbuc_1219 encoding UDP-N-acetylmuramate-L-alanine ligase, Lbuc_0466 encoding ornithine carbamoyltransferase and Lbuc_0858 encoding glycine hydroxymethyltransferase showed no impact on growth in media with 4% ethanol with IPTG induction when compared with E. coli carrying control pET28b plasmid. The expression of two genes Lbuc_1557 (S-layer glycoprotein) and Lbuc_2157 (6-phosphogluconate dehydrogenase) resulted ethanol sensitivity phenotype.


Asunto(s)
Farmacorresistencia Bacteriana , Escherichia coli/crecimiento & desarrollo , Etanol/farmacología , Lactobacillus/genética , Proteínas Recombinantes/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Técnicas Bacteriológicas , Clonación Molecular , Medios de Cultivo/química , Escherichia coli/efectos de los fármacos , Escherichia coli/genética , Escherichia coli/metabolismo , Fermentación , Perfilación de la Expresión Génica , Regulación Bacteriana de la Expresión Génica , Lactobacillus/metabolismo , Viabilidad Microbiana , Proteínas Recombinantes/metabolismo
2.
J Ind Microbiol Biotechnol ; 46(11): 1547-1556, 2019 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-31289974

RESUMEN

Lactobacillus buchneri and Oenococcus oeni are two unique ethanol-tolerant Gram-positive bacteria species. Genome comparison analyses revealed that L. buchneri and O. oeni possess a pntAB locus that was absent in almost all other lactic acid bacteria (LAB) genomes. Our hypothesis is that the pntAB locus contributes to the ethanol tolerance trait of these two distinct ethanol-tolerant organisms. The pntAB locus, consisting of the pntA and pntB genes, codes for NADP(H) transhydrogenase subunits. This membrane-bound transhydrogenase catalyzes the reduction of NADP+ and is known as an important enzyme in maintaining cellular redox balance. In this study, the transhydrogenase operon from L. buchneri NRRL B-30929 and O. oeni PSU-1 were cloned and analyzed. The LbpntB shared 71.0% identity with the O. oeni (OopntB). The entire pntAB locus was expressed in Lactococcus lactis ssp. lactis IL1403 resulting in an increased tolerance to ethanol (6%), butanol (1.8%) and isopropanol (1.8%) when compared to the control strain. However, the recombinant E. coli cells carrying the entire pntAB locus did not show any improved ethanol tolerance. Independent expression of OopntB and LbpntB in recombinant E. coli BL21(DE3)pLysS host demonstrated higher tolerance to ethanol when compared with a control E. coli BL21(DE3)pLysS strain carrying pET28b vector. Ethanol tolerance comparison of E. coli strains carrying LbpntB and OopntB showed that LbpntB conferred higher ethanol tolerance (4.5%) and resulted in greater biomass, while the OopntB conferred lower ethanol tolerance (4.0%) resulted lower biomass. Therefore, the pntB gene from L. buchneri is a better choice in generating higher ethanol tolerance. This is the first study to uncover the role of pntAB locus on ethanol tolerance.


Asunto(s)
Etanol/metabolismo , Lactobacillus/metabolismo , NADP Transhidrogenasas/metabolismo , Oenococcus/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Sitios Genéticos , Lactobacillus/genética , NADP Transhidrogenasas/genética , Oenococcus/genética
3.
World J Microbiol Biotechnol ; 33(3): 51, 2017 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-28190182

RESUMEN

Fermentative production of butanol for use as a biofuel or chemical feedstock is regarded as a promising renewable technology that reduces greenhouse gas emissions and has the potential to become a substitute for non-sustainable chemical production route. However, butanol toxicity to the producing microbes remains a barrier to achieving sufficiently high titers for cost-effective butanol fermentation and recovery. Investigations of the external stress of high butanol concentration on butanol-producing microbial strains will aid in developing improved microbes with increased tolerance to butanol. With currently available molecular tool boxes, researchers have aimed to address and understand how butanol affects different microbes. This review will cover the individual organism's inherent responses to surrounding butanol levels, and the collective efforts by researchers to improve production and tolerance. The specific microorganisms discussed here include the native butanol producer Clostridium species, the fermentation industrial model Saccharomyces cerevisiae and the photosynthetic cyanobacteria, the genetic engineering workhorse Escherichia coli, and also the butanol-tolerant lactic acid bacteria that utilize diverse substrates. The discussion will help to understand the physiology of butanol resistance and to identify specific butanol tolerance genes that will lead to informed genetic engineering strategies for new strain development.


Asunto(s)
Butanoles/metabolismo , Ingeniería Genética/métodos , Microbiología Industrial/métodos , Clostridium/genética , Clostridium/metabolismo , Cianobacterias/genética , Cianobacterias/metabolismo , Tolerancia a Medicamentos , Escherichia coli/genética , Escherichia coli/metabolismo , Fermentación , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo
4.
World J Microbiol Biotechnol ; 33(4): 78, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-28341907

RESUMEN

Inulins are polysaccharides that belong to an important class of carbohydrates known as fructans and are used by many plants as a means of storing energy. Inulins contain 20 to several thousand fructose units joined by ß-2,1 glycosidic bonds, typically with a terminal glucose unit. Plants with high concentrations of inulin include: agave, asparagus, coffee, chicory, dahlia, dandelion, garlic, globe artichoke, Jerusalem artichoke, jicama, onion, wild yam, and yacón. To utilize inulin as its carbon and energy source directly, a microorganism requires an extracellular inulinase to hydrolyze the glycosidic bonds to release fermentable monosaccharides. Inulinase is produced by many microorganisms, including species of Aspergillus, Kluyveromyces, Penicillium, and Pseudomonas. We review various inulinase-producing microorganisms and inulin feedstocks with potential for industrial application as well as biotechnological efforts underway to develop sustainable practices for the disposal of residues from processing inulin-containing crops. A multi-stage biorefinery concept is proposed to convert cellulosic and inulin-containing waste produced at crop processing operations to valuable biofuels and bioproducts using Kluyveromyces marxianus, Yarrowia lipolytica, Rhodotorula glutinis, and Saccharomyces cerevisiae as well as thermochemical treatments.


Asunto(s)
Bacterias/enzimología , Biocombustibles/microbiología , Hongos/crecimiento & desarrollo , Glicósido Hidrolasas/metabolismo , Inulina/metabolismo , Plantas/metabolismo , Aspergillus/enzimología , Bacterias/crecimiento & desarrollo , Proteínas Bacterianas/metabolismo , Fermentación , Proteínas Fúngicas/metabolismo , Hongos/enzimología , Residuos Industriales , Kluyveromyces/enzimología , Penicillium/enzimología , Pseudomonas/enzimología
5.
J Ind Microbiol Biotechnol ; 43(4): 441-50, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26790414

RESUMEN

The yajC gene (Lbuc_0921) from Lactobacillus buchneri NRRL B-30929 was identified from previous proteomics analyses in response to ethanol treatment. The YajC protein expression was increased by 15-fold in response to 10 % ethanol vs 0 % ethanol. The yajC gene encodes the smaller subunit of the preprotein translocase complex, which interacts with membrane protein SecD and SecF to coordinate protein transport and secretion across cytoplasmic membrane in Escherichia coli. The YajC protein was linked to sensitivity to growth temperatures in E. coli, involved in translocation of virulence factors during Listeria infection, and stimulating a T cell-mediated response of Brucella abortus. In this study, the L. buchneri yajC gene was over-expressed in E. coli. The strain carrying pET28byajC that produces YajC after isopropyl ß-D-1-thiogalactopyranoside induction showed tolerance to 4 % ethanol in growth media, compared to the control carrying pET28b. This is the first report linking YajC to ethanol stress and tolerance.


Asunto(s)
Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Escherichia coli/efectos de los fármacos , Escherichia coli/genética , Etanol/farmacología , Lactobacillus/genética , Estrés Fisiológico/efectos de los fármacos , Proteínas Bacterianas/biosíntesis , Membrana Celular/efectos de los fármacos , Membrana Celular/metabolismo , Escherichia coli/citología , Escherichia coli/metabolismo , Proteínas de Escherichia coli/biosíntesis , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Genes Bacterianos , Transporte de Proteínas/efectos de los fármacos , Canales de Translocación SEC/biosíntesis , Canales de Translocación SEC/genética , Canales de Translocación SEC/metabolismo , Estrés Fisiológico/genética
6.
J Ind Microbiol Biotechnol ; 43(7): 927-39, 2016 07.
Artículo en Inglés | MEDLINE | ID: mdl-27130462

RESUMEN

Economically important plants contain large amounts of inulin. Disposal of waste resulting from their processing presents environmental issues. Finding microorganisms capable of converting inulin waste to biofuel and valuable co-products at the processing site would have significant economic and environmental impact. We evaluated the ability of two mutant strains of Kluyveromyces marxianus (Km7 and Km8) to utilize inulin for ethanol production. In glucose medium, both strains consumed all glucose and produced 0.40 g ethanol/g glucose at 24 h. In inulin medium, Km7 exhibited maximum colony forming units (CFU)/mL and produced 0.35 g ethanol/g inulin at 24 h, while Km8 showed maximum CFU/mL and produced 0.02 g ethanol/g inulin at 96 h. At 24 h in inulin + glucose medium, Km7 produced 0.40 g ethanol/g (inulin + glucose) and Km8 produced 0.20 g ethanol/g (inulin + glucose) with maximum CFU/mL for Km8 at 72 h, 40 % of that for Km7 at 36 h. Extracellular inulinase activity at 6 h for both Km7 and Km8 was 3.7 International Units (IU)/mL.


Asunto(s)
Etanol/metabolismo , Glicósido Hidrolasas/metabolismo , Inulina/química , Kluyveromyces/crecimiento & desarrollo , Biocombustibles , Café/química , Medios de Cultivo/química , Glucosa/química , Kluyveromyces/enzimología , Kluyveromyces/genética , Mutación
7.
Appl Microbiol Biotechnol ; 99(22): 9723-43, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26272089

RESUMEN

Increased interest in sustainable production of renewable diesel and other valuable bioproducts is redoubling efforts to improve economic feasibility of microbial-based oil production. Yarrowia lipolytica is capable of employing a wide variety of substrates to produce oil and valuable co-products. We irradiated Y. lipolytica NRRL YB-567 with UV-C to enhance ammonia (for fertilizer) and lipid (for biodiesel) production on low-cost protein and carbohydrate substrates. The resulting strains were screened for ammonia and oil production using color intensity of indicators on plate assays. Seven mutant strains were selected (based on ammonia assay) and further evaluated for growth rate, ammonia and oil production, soluble protein content, and morphology when grown on liver infusion medium (without sugars), and for growth on various substrates. Strains were identified among these mutants that had a faster doubling time, produced higher maximum ammonia levels (enzyme assay) and more oil (Sudan Black assay), and had higher maximum soluble protein levels (Bradford assay) than wild type. When grown on plates with substrates of interest, all mutant strains showed similar results aerobically to wild-type strain. The mutant strain with the highest oil production and the fastest doubling time was evaluated on coffee waste medium. On this medium, the strain produced 0.12 g/L ammonia and 0.20 g/L 2-phenylethanol, a valuable fragrance/flavoring, in addition to acylglycerols (oil) containing predominantly C16 and C18 residues. These mutant strains will be investigated further for potential application in commercial biodiesel production.


Asunto(s)
Amoníaco/metabolismo , Metabolismo de los Hidratos de Carbono , Aceites/metabolismo , Proteínas/metabolismo , Rayos Ultravioleta , Yarrowia/metabolismo , Yarrowia/efectos de la radiación , Aerobiosis , Café/metabolismo , Medios de Cultivo/química , Tamizaje Masivo , Mutación , Yarrowia/crecimiento & desarrollo
8.
Artículo en Inglés | MEDLINE | ID: mdl-38252201

RESUMEN

Clostridium tyrobutyricum strain NRRL B-67062 was previously isolated from an ethanol production facility and shown to produce high yields of butyric acid. In addition, the cell-free supernatant of the fermentation broth from NRRL B-67062 contained antibacterial activity against certain Gram-positive bacteria. To determine the source of this antibacterial activity, we report the genome and genome mining of this strain. The complete genome of NRRL B-67062 showed one circular chromosome of 3,242,608 nucleotides, 3114 predicted coding sequences, 79 RNA genes, and a G+C content of 31.0%. Analyses of the genome data for genes potentially associated with antimicrobial features were sought after by using BAGEL-4 and anti-SMASH databases. Among the leads, a polypeptide of 66 amino acids (PEG 446) contains the DUF4177 domain, which is an uncharacterized highly conserved domain (pfam13783). The cloning and expression of the peg446 gene in Escherichia coli and Bacillus subtilis confirmed the antibacterial property against Lactococcus lactis LM 0230, Limosilactobacillus fermentum 0315-25, and Listeria innocua NRRL B-33088 by gel overlay and well diffusion assays. Molecular modeling suggested that PEG 446 contains one alpha-helix and three anti-parallel short beta-sheets. These results will aid further functional studies and facilitate simultaneously fermentative production of both butyric acid and a putative bacteriocin from agricultural waste and lignocellulosic biomass materials.

9.
Bioprocess Biosyst Eng ; 36(1): 109-16, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22729675

RESUMEN

Acetone butanol ethanol (ABE) was produced in an integrated continuous one-stage fermentation and gas stripping product recovery system using Clostridium beijerinckii BA101 and fermentation gases (CO(2) and H(2)). In this system, the bioreactor was fed with a concentrated sugar solution (250-500 g L(-1) glucose). The bioreactor was bled semi-continuously to avoid accumulation of inhibitory chemicals and products. The continuous system was operated for 504 h (21 days) after which the fermentation was intentionally terminated. The bioreactor produced 461.3 g ABE from 1,125.0 g total sugar in 1 L culture volume as compared to a control batch process in which 18.4 g ABE was produced from 47.3 g sugar. These results demonstrate that ABE fermentation can be operated in an integrated continuous one-stage fermentation and product recovery system for a long period of time, if butanol and other microbial metabolites in the bioreactor are kept below threshold of toxicity.


Asunto(s)
Acetona/metabolismo , Biocombustibles/microbiología , Reactores Biológicos/microbiología , Butanoles/metabolismo , Clostridium beijerinckii/metabolismo , Etanol/metabolismo , Glucosa/metabolismo , Acetona/aislamiento & purificación , Butanoles/aislamiento & purificación , Etanol/aislamiento & purificación
10.
Environ Technol ; 34(13-16): 1837-48, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24350437

RESUMEN

Switchgrass (Panicum virgatum L.) is a perennial C4 grass that is being developed as a bioenergy crop because it has high production yields and suitable agronomic traits. Five switchgrass biomass samples from upland and lowland switchgrass ecotypes harvested at different stages or maturity were used in this study. Switchgrass samples contained 317.0-385.0 g glucans/kg switchgrass dry basis (db) and 579.3-660.2 g total structural carbohydrates/kg switchgrass, db. Carbohydrate contents were greater for the upland ecotype versus lowland ecotype and increased with harvest maturity. Pretreatment of switchgrass with dilute ammonium hydroxide (8% w/w ammonium loading) at 170 degrees C for 20 min was determined to be effective for preparing switchgrass for enzymatic conversion to monosaccharides; glucose recoveries were 66.9-90.5% and xylose recoveries 60.1-84.2% of maximum and decreased with increased maturity at harvest. Subsequently, pretreated switchgrass samples were converted to ethanol by simultaneous saccharification and fermentation using engineered xylose-fermenting Saccharomyces cerevisiae strain YRH400. Ethanol yields were 176.2-202.01/Mg of switchgrass (db) and followed a similar trend as observed for enzymatic sugar yields.


Asunto(s)
Hidróxido de Amonio/química , Biocombustibles , Etanol/metabolismo , Panicum/química , Panicum/metabolismo , Biomasa , Biotecnología , Etanol/análisis , Etanol/química , Fermentación , Glucosa/análisis , Glucosa/metabolismo , Xilosa/análisis , Xilosa/metabolismo
11.
Biotechnol Bioeng ; 109(4): 913-21, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22095002

RESUMEN

n-Butanol was produced continuously in a two-stage fermentor system with integrated product removal from a co-feed of n-butyric acid and glucose. Glucose was always required as a source of ATP and electrons for the conversion of n-butyrate to n-butanol and for biomass growth; for the latter it also served as a carbon source. The first stage generated metabolically active planktonic cells of Clostridium saccharoperbutylacetonicum strain N1-4 that were continuously fed into the second (production) stage; the volumetric ratio of the two fermentors was 1:10. n-Butanol was removed continuously from the second stage via gas stripping. Implementing a two-stage process was observed to dramatically dampen metabolic oscillations (i.e., periodical changes of solventogenic activity). Culture degeneration (i.e., an irreversible loss of solventogenic activity) was avoided by periodical heat shocking and re-inoculating stage 1 and by maintaining the concentration of undissociated n-butyric acid in stage 2 at 3.4 mM with a pH-auxostat. The system was successfully operated for 42 days during which 93% of the fed n-butyrate was converted to n-butanol at a production rate of 0.39 g/(L × h). The molar yields Y(n-butanol/n-butyrate) and Y(n-butanol/glucose) were 2.0, and 0.718, respectively. For the same run, the molar ratio of n-butyrate to glucose consumed was 0.358. The molar yield of carbon in n-butanol produced from carbon in n-butyrate and glucose consumed (Y(n-butanol/carbon) ) was 0.386. These data illustrate that conversion of n-butyrate into n-butanol by solventogenic Clostridium species is feasible and that this can be performed in a continuous system operating for longer than a month. However, our data also demonstrate that a relatively large amount of glucose is required to supply electrons and ATP for this conversion and for cell growth in a continuous culture.


Asunto(s)
1-Butanol/metabolismo , Técnicas de Cultivo Celular por Lotes/métodos , Biocombustibles , Reactores Biológicos , Butiratos/metabolismo , Clostridium/metabolismo , Microbiología Industrial/métodos , 1-Butanol/aislamiento & purificación , Técnicas de Cultivo Celular por Lotes/instrumentación , Clostridium/clasificación , Fermentación , Glucosa/metabolismo , Lignina/metabolismo , Concentración Osmolar , Especificidad de la Especie , Temperatura
12.
J Ind Microbiol Biotechnol ; 39(1): 163-73, 2012 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-21748309

RESUMEN

Scheffersomyces (formerly Pichia) stipitis NRRL Y-7124 was mutagenized using UV-C irradiation to produce yeast strains for anaerobic conversion of lignocellulosic sugars to ethanol. UV-C irradiation potentially produces large numbers of random mutations broadly and uniformly over the whole genome to generate unique strains. Wild-type cultures of S. stipitis NRRL Y-7124 were subjected to UV-C (234 nm) irradiation targeted at approximately 40% cell survival. When surviving cells were selected in sufficient numbers via automated plating strategies and cultured anaerobically on xylose medium for 5 months at 28°C, five novel mutagenized S. stipitis strains were obtained. Variable number tandem repeat analysis revealed that mutations had occurred in the genome, which may have produced genes that allowed the anaerobic utilization of xylose. The mutagenized strains were capable of growing anaerobically on xylose/glucose substrate with higher ethanol production during 250- to 500-h growth than a Saccharomyces cerevisiae yeast strain that is the standard for industrial fuel ethanol production. The S. stipitis strains resulting from this intense multigene mutagenesis strategy have potential application in industrial fuel ethanol production from lignocellulosic hydrolysates.


Asunto(s)
Etanol/metabolismo , Mutagénesis , Saccharomycetales/genética , Saccharomycetales/metabolismo , Rayos Ultravioleta , Xilosa/metabolismo , Anaerobiosis , Animales , Fermentación , Glucosa/metabolismo , Lignina/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crecimiento & desarrollo , Saccharomycetales/crecimiento & desarrollo , Saccharomycetales/efectos de la radiación
13.
Probiotics Antimicrob Proteins ; 14(6): 1170-1183, 2022 12.
Artículo en Inglés | MEDLINE | ID: mdl-35995909

RESUMEN

Milk kefir fermentation has been used in households for generations. Consumption of milk kefir has been associated with various health benefits, presumably from the probiotics of yeast and bacteria that make up the kefir grains. In addition, many of the microbes are known to produce novel antimicrobial compounds that can be used for other applications. The microbes living inside kefir grains differ significantly depending on geographical location and production methods. In this study, we aimed to use metagenomic analysis of fermented milk by using three different kefir grains (kefir 1, kefir 2, and kefir 3) from different US sources. We analyzed the microbial compositions of the three milk fermentation samples. This study revealed that each sample contains unique and distinct groups of microbes, kefir 1 showed the least diversity, and kefir 3 showed the highest diversity. Kefir 3 is rich in Proteobacteria while kefir 2 is dominated by the Firmicutes. Using bacterial indicator growth analyses carried out by continuous readings from microplate-based bioreactor assays suggested that kefir 2 fermentation filtrate has higher antibacterial property. We have screened 30 purified cultures of kefir 2 sample and isolated two lactic acid bacteria strains with higher antibacterial activities; the two strains were identified as Leuconostoc mesenteroides 28-1 and Lentilactobacillus kefiri 25-2 by 16S genomic PCR with confirmed antibacterial activities of fermentation filtrate after growing under both aerobic and anaerobic conditions.


Asunto(s)
Productos Lácteos Cultivados , Kéfir , Lactobacillales , Animales , Kéfir/microbiología , Leche/microbiología , Productos Lácteos Cultivados/microbiología , Fermentación , Antibacterianos/farmacología
14.
Biotechnol Bioeng ; 108(8): 1757-65, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21370232

RESUMEN

Simultaneous acetone butanol ethanol (ABE) fermentation by Clostridium beijerinckii P260 and in situ product recovery was investigated using a vacuum process operated in two modes: continuous and intermittent. Integrated batch fermentations and ABE recovery were conducted at 37 °C using a 14-L bioreactor (7.0 L fermentation volume) containing initial substrate (glucose) concentration of 60 g/L. The bioreactor was connected in series with a condensation system and vacuum pump. Vacuum was applied continuously or intermittently with 1.5 h vacuum sessions separated by 4, 6, and 8 h intervals. A control ABE fermentation experiment was characterized by incomplete glucose utilization due to butanol toxicity to C. beijerinckii P260, while fermentation coupled with in situ recovery by both continuous and intermittent vacuum modes resulted in complete utilization of glucose, greater productivity, improved cell growth, and concentrated recovered ABE stream. These results demonstrate that vacuum technology can be applied to integrated ABE fermentation and recovery even though the boiling point of butanol is greater than that of water.


Asunto(s)
Reactores Biológicos , Biotecnología/métodos , Butanoles/metabolismo , Clostridium beijerinckii/metabolismo , Acetona/aislamiento & purificación , Acetona/metabolismo , Acetona/toxicidad , Butanoles/aislamiento & purificación , Butanoles/toxicidad , Clostridium beijerinckii/efectos de los fármacos , Etanol/aislamiento & purificación , Etanol/metabolismo , Etanol/toxicidad , Fermentación , Glucosa/metabolismo , Temperatura , Vacio
15.
Appl Microbiol Biotechnol ; 92(4): 865-74, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-21968655

RESUMEN

Ethanol production by recombinant Escherichia coli strain FBR5 from dilute acid pretreated wheat straw (WS) by separate hydrolysis and fermentation (SHF) and simultaneous saccharification and fermentation (SSF) was studied. The yield of total sugars from dilute acid (0.5% H(2)SO(4)) pretreated (160 °C, 10 min) and enzymatically saccharified (pH 5.0, 45 °C, 72 h) WS (86 g/l) was 50.0 ± 1.4 g/l. The hydrolyzate contained 1,184 ± 19 mg furfural and 161 ± 1 mg hydroxymethyl furfural per liter. The recombinant E. coli FBR5 could not grow at all at pH controlled at 4.5 to 6.5 in the non-abated wheat straw hydrolyzate (WSH) at 35 °C. However, it produced 21.9 ± 0.3 g ethanol from non-abated WSH (total sugars, 44.1 ± 0.4 g/l) in 90 h including the lag time of 24 h at controlled pH 7.0 and 35 °C. The bioabatement of WS was performed by growing Coniochaeta ligniaria NRRL 30616 in the liquid portion of the pretreated WS aerobically at pH 6.5 and 30 °C for 15 h. The bacterium produced 21.6 ± 0.5 g ethanol per liter in 40 h from the bioabated enzymatically saccharified WSH (total sugars, 44.1 ± 0.4 g) at pH 6.0. It produced 24.9 ± 0.3 g ethanol in 96 h and 26.7 ± 0.0 g ethanol in 72 h per liter from bioabated WSH by batch SSF and fed-batch SSF, respectively. SSF offered a distinct advantage over SHF with respect to reducing total time required to produce ethanol from the bioabated WS. Also, fed-batch SSF performed better than the batch SSF with respect to shortening the time requirement and increase in ethanol yield.


Asunto(s)
Metabolismo de los Hidratos de Carbono , Carbohidratos/aislamiento & purificación , Escherichia coli/metabolismo , Etanol/metabolismo , Tallos de la Planta/metabolismo , Triticum/metabolismo , Ascomicetos/crecimiento & desarrollo , Ascomicetos/metabolismo , Escherichia coli/genética , Escherichia coli/crecimiento & desarrollo , Fermentación , Concentración de Iones de Hidrógeno , Hidrólisis , Temperatura
16.
J Ind Microbiol Biotechnol ; 38(9): 1193-202, 2011 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-21107642

RESUMEN

Saccharomyces' physiology and fermentation-related properties vary broadly among industrial strains used to ferment glucose. How genetic background affects xylose metabolism in recombinant Saccharomyces strains has not been adequately explored. In this study, six industrial strains of varied genetic background were engineered to ferment xylose by stable integration of the xylose reductase, xylitol dehydrogenase, and xylulokinase genes. Aerobic growth rates on xylose were 0.04-0.17 h(-1). Fermentation of xylose and glucose/xylose mixtures also showed a wide range of performance between strains. During xylose fermentation, xylose consumption rates were 0.17-0.31 g/l/h, with ethanol yields 0.18-0.27 g/g. Yields of ethanol and the metabolite xylitol were positively correlated, indicating that all of the strains had downstream limitations to xylose metabolism. The better-performing engineered and parental strains were compared for conversion of alkaline pretreated switchgrass to ethanol. The engineered strains produced 13-17% more ethanol than the parental control strains because of their ability to ferment xylose.


Asunto(s)
Fermentación , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Xilosa/metabolismo , Aldehído Reductasa/genética , Aldehído Reductasa/metabolismo , D-Xilulosa Reductasa/genética , D-Xilulosa Reductasa/metabolismo , Etanol/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Ingeniería Genética , Glucosa/metabolismo , Microbiología Industrial , Panicum/metabolismo , Fosfotransferasas (Aceptor de Grupo Alcohol)/genética , Fosfotransferasas (Aceptor de Grupo Alcohol)/metabolismo , Saccharomyces cerevisiae/crecimiento & desarrollo , Xilitol/metabolismo
18.
ACS Omega ; 6(5): 4034-4043, 2021 Feb 09.
Artículo en Inglés | MEDLINE | ID: mdl-33644533

RESUMEN

Butanol can be produced biologically through fermentation of lignocellulosic biomass-derived sugars by Gram-positive Clostridium species. For cost-effective production, increased butanol fermentation titers are desired. However, the currently available butanol-fermenting microbes do not tolerate sufficiently high butanol concentrations; thus, new butanol-tolerant strains are desired. One promising strategy is to genetically modify Clostridium species by introducing stress tolerance-associated genes. This study was aimed to seek butanol tolerance genes from other Gram-positive species, which might be better suited than those from Gram-negative E. coli or eukaryotic Saccharomyces cerevisiae. Several butanol-tolerant lactobacilli were reported previously, and Lactobacillus mucosae BR0713-33, which showed the most robust anaerobic growth in 4% butanol, was used here for proteomics analyses. Cellular proteins that responded to 2, 3, and 4% butanol were characterized. Twenty-nine proteins that were identified were dysregulated in response to increased concentrations of butanol in L. mucosae . Seventeen genes involved in coding for stress-tolerant proteins GroES, GroEL, and DnaK and genes involved in substrate utilization, fatty acid metabolism, and nucleotide synthesis were induced by increased butanol, and 12 genes involving energy production (F0F1ATP synthases) and redox balance preservation were repressed by increased butanol. These results can help guide targeted engineering strategies to improve tolerance and production of biobutanol.

19.
Plasmid ; 61(1): 22-38, 2009 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-18831987

RESUMEN

A three-plasmid yeast expression system utilizing the portable small ubiquitin-like modifier (SUMO) vector set combined with the efficient endogenous yeast protease Ulp1 was developed for production of large amounts of soluble functional protein in Saccharomyces cerevisiae. Each vector has a different selectable marker (URA, TRP, or LEU), and the system provides high expression levels of three different proteins simultaneously. This system was integrated into the protocols on a fully automated plasmid-based robotic platform to screen engineered strains of S. cerevisiae for improved growth on xylose. First, a novel PCR assembly strategy was used to clone a xylose isomerase (XI) gene into the URA-selectable SUMO vector and the plasmid was placed into the S. cerevisiae INVSc1 strain to give the strain designated INVSc1-XI. Second, amino acid scanning mutagenesis was used to generate a library of mutagenized genes encoding the bioinsecticidal peptide lycotoxin-1 (Lyt-1) and the library was cloned into the TRP-selectable SUMO vector and placed into INVSc1-XI to give the strain designated INVSc1-XI-Lyt-1. Third, the Yersinia pestis xylulokinase gene was cloned into the LEU-selectable SUMO vector and placed into the INVSc1-XI-Lyt-1 yeast. Yeast strains expressing XI and xylulokinase with or without Lyt-1 showed improved growth on xylose compared to INVSc1-XI yeast.


Asunto(s)
Isomerasas Aldosa-Cetosa/metabolismo , Fosfotransferasas (Aceptor de Grupo Alcohol)/metabolismo , Plásmidos/genética , Saccharomyces cerevisiae/metabolismo , Proteínas Modificadoras Pequeñas Relacionadas con Ubiquitina/genética , Venenos de Araña/metabolismo , Xilosa/metabolismo , Isomerasas Aldosa-Cetosa/genética , Clonación Molecular , Vectores Genéticos , Microscopía Electrónica de Rastreo , Microscopía Electrónica de Transmisión , Mutación , Fosfotransferasas (Aceptor de Grupo Alcohol)/genética , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crecimiento & desarrollo , Saccharomyces cerevisiae/ultraestructura , Proteínas Modificadoras Pequeñas Relacionadas con Ubiquitina/metabolismo , Venenos de Araña/genética , Transformación Genética
20.
Biotechnol Prog ; 35(3): e2767, 2019 05.
Artículo en Inglés | MEDLINE | ID: mdl-30565888

RESUMEN

Yellow Top (Physaria fendleri) is a plant that belongs to the mustard family. This plant is used to produce seeds that are rich in hydroxy oil. After extraction of oil, the presscake is land filled. The seedcake is rich in polymeric sugars and can be used for various bioconversions. For the present case, the seedcake or presscake was hydrolyzed with dilute (0.50% [v/v]) H2 SO4 and enzymes to release sugars including glucose, xylose, galactose, arabinose, and mannose. Then, the hydrolyzate was used to produce acetone-butanol-ethanol (ABE). Using 100 gL-1 presscake (prior to pretreatment), 19.22 gL-1 of ABE was successfully produced of which butanol was the major product. In this process, an ABE productivity of 0.48 gL-1 h-1 was obtained. These results are superior to glucose fermentation to produce ABE in which an ABE productivity of 0.42 gL-1 h-1 was obtained. Use of Yellow Top to produce butanol has the following advantages: (i) it is an economic feedstock and is expected to produce butanol economically; (ii) it avoids pollution concerns when not land filled; and (iii) rate of ABE production is not inhibited when fermented this substrate. It is suggested that the potential of this feedstock be further explored by optimizing process parameters for this valuable fermentation. © 2018 American Institute of Chemical Engineers Biotechnol. Prog., 35: e2767, 2019.


Asunto(s)
Brassicaceae/química , Butanoles/metabolismo , Clostridium beijerinckii/metabolismo , Aceites de Plantas/análisis , Residuos/análisis , Biodegradación Ambiental , Brassicaceae/microbiología , Butanoles/análisis , Fermentación , Glucosa/metabolismo , Hidrólisis , Aceites de Plantas/metabolismo
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