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1.
J Am Chem Soc ; 2024 Sep 19.
Artículo en Inglés | MEDLINE | ID: mdl-39298266

RESUMEN

Powder X-ray diffraction (PXRD) is a cornerstone technique in materials characterization. However, complete structure determination from PXRD patterns alone remains time-consuming and is often intractable, especially for novel materials. Current machine learning (ML) approaches to PXRD analysis predict only a subset of the total information that comprises a crystal structure. We developed a pioneering generative ML model designed to solve crystal structures from real-world experimental PXRD data. In addition to strong performance on simulated diffraction patterns, we demonstrate full structure solutions over a large set of experimental diffraction patterns. Benchmarking our model, we predicted the structure for 134 experimental patterns from the RRUFF database and thousands of simulated patterns from the Materials Project on which our model achieves state-of-the-art 42 and 67% match rate, respectively. Further, we applied our model to determine the unreported structures of materials such as NaCu2P2, Ca2MnTeO6, ZrGe6Ni6, LuOF, and HoNdV2O8 from the Powder Diffraction File database. We extended this methodology to new materials created in our lab at high pressure with previously unsolved structures and found the new binary compounds Rh3Bi, RuBi2, and KBi3. We expect that our model will open avenues toward materials discovery under conditions which preclude single crystal growth and toward automated materials discovery pipelines, opening the door to new domains of chemistry.

2.
J Am Chem Soc ; 144(27): 11943-11948, 2022 Jul 13.
Artículo en Inglés | MEDLINE | ID: mdl-35767718

RESUMEN

Spin-orbit coupling enables the realization of topologically nontrivial ground states. As spin-orbit coupling increases with increasing atomic number, compounds featuring heavy elements, such as lead, offer a pathway toward creating new topologically nontrivial materials. By employing a high-pressure flux synthesis method, we synthesized single crystals of Ni3Pb2, the first structurally characterized bulk binary phase in the Ni-Pb system. Combining experimental and theoretical techniques, we examined structure and bonding in Ni3Pb2, revealing the impact of chemical substitutions on electronic structure features of importance for controlling topological behavior. From these results, we determined that Ni3Pb2 completes a series of structurally related transition-metal-heavy main group intermetallic materials that exhibit diverse electronic structures, opening a platform for synthetically tunable topologically nontrivial materials.

3.
PLoS Comput Biol ; 14(3): e1005985, 2018 03.
Artículo en Inglés | MEDLINE | ID: mdl-29579036

RESUMEN

Most cancer cells harbor multiple drivers whose epistasis and interactions with expression context clouds drug and drug combination sensitivity prediction. We constructed a mechanistic computational model that is context-tailored by omics data to capture regulation of stochastic proliferation and death by pan-cancer driver pathways. Simulations and experiments explore how the coordinated dynamics of RAF/MEK/ERK and PI-3K/AKT kinase activities in response to synergistic mitogen or drug combinations control cell fate in a specific cellular context. In this MCF10A cell context, simulations suggest that synergistic ERK and AKT inhibitor-induced death is likely mediated by BIM rather than BAD, which is supported by prior experimental studies. AKT dynamics explain S-phase entry synergy between EGF and insulin, but simulations suggest that stochastic ERK, and not AKT, dynamics seem to drive cell-to-cell proliferation variability, which in simulations is predictable from pre-stimulus fluctuations in C-Raf/B-Raf levels. Simulations suggest MEK alteration negligibly influences transformation, consistent with clinical data. Tailoring the model to an alternate cell expression and mutation context, a glioma cell line, allows prediction of increased sensitivity of cell death to AKT inhibition. Our model mechanistically interprets context-specific landscapes between driver pathways and cell fates, providing a framework for designing more rational cancer combination therapy.


Asunto(s)
Antineoplásicos/farmacología , Biología Computacional/métodos , Mitógenos/farmacología , Neoplasias , Transducción de Señal/efectos de los fármacos , Algoritmos , Línea Celular Tumoral , Perfilación de la Expresión Génica , Humanos , Neoplasias/genética , Neoplasias/metabolismo , Procesos Estocásticos
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