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1.
J Antimicrob Chemother ; 76(6): 1593-1603, 2021 05 12.
Artículo en Inglés | MEDLINE | ID: mdl-33599275

RESUMEN

OBJECTIVES: To provide a basis for clinical management decisions in Purpureocillium lilacinum infection. METHODS: Unpublished cases of invasive P. lilacinum infection from the FungiScope® registry and all cases reported in the literature were analysed. RESULTS: We identified 101 cases with invasive P. lilacinum infection. Main predisposing factors were haematological and oncological diseases in 31 cases (30.7%), steroid treatment in 27 cases (26.7%), solid organ transplant in 26 cases (25.7%), and diabetes mellitus in 19 cases (18.8%). The most prevalent infection sites were skin (n = 37/101, 36.6%) and lungs (n = 26/101, 25.7%). Dissemination occurred in 22 cases (21.8%). Pain and fever were the most frequent symptoms (n = 40/101, 39.6% and n = 34/101, 33.7%, respectively). Diagnosis was established by culture in 98 cases (97.0%). P. lilacinum caused breakthrough infection in 10 patients (9.9%). Clinical isolates were frequently resistant to amphotericin B, whereas posaconazole and voriconazole showed good in vitro activity. Susceptibility to echinocandins varied considerably. Systemic antifungal treatment was administered in 90 patients (89.1%). Frequently employed antifungals were voriconazole in 51 (56.7%) and itraconazole in 26 patients (28.9%). Amphotericin B treatment was significantly associated with high mortality rates (n = 13/33, 39.4%, P = <0.001). Overall mortality was 21.8% (n = 22/101) and death was attributed to P. lilacinum infection in 45.5% (n = 10/22). CONCLUSIONS: P. lilacinum mainly presents as soft-tissue, pulmonary or disseminated infection in immunocompromised patients. Owing to intrinsic resistance, accurate species identification and susceptibility testing are vital. Outcome is better in patients treated with triazoles compared with amphotericin B formulations.


Asunto(s)
Paecilomyces , Anfotericina B , Antifúngicos/uso terapéutico , Humanos , Hypocreales , Pruebas de Sensibilidad Microbiana , Voriconazol
2.
Artículo en Inglés | MEDLINE | ID: mdl-33020164

RESUMEN

The EUCAST EDef 9.3.2 procedure recommends visual readings of azole and amphotericin B MICs against Aspergillus spp. Visual determination of MICs may be challenging. In this work, we aim to obtain and compare visual and spectrophotometric MIC readings of azoles and amphotericin B against Aspergillus fumigatussensu lato isolates. A total of 847 A. fumigatussensu lato isolates (A. fumigatus sensu stricto [n = 828] and cryptic species [n = 19]) were tested against amphotericin B, itraconazole, voriconazole, posaconazole, and isavuconazole using the EUCAST EDef 9.3.2 procedure. Isolates were classified as susceptible or resistant/non-wild type according to the 2020 updated breakpoints. The area of technical uncertainty for the azoles was defined in the updated breakpoints. Visual and spectrophotometric (fungal growth reduction of >95% compared to the control, read at 540 nm) MICs were compared. Essential (±1 2-fold dilution) and categorical agreements were calculated. Overall, high essential (97.1%) and categorical (99.6%) agreements were found. We obtained 100% categorical agreements for amphotericin B, itraconazole, and posaconazole, and consequently, no errors were found. Categorical agreements were 98.7 and 99.3% for voriconazole and isavuconazole, respectively. Most of the misclassifications for voriconazole and isavuconazole were found to be associated with MIC results falling either in the area of technical uncertainty or within one 2-fold dilution above the breakpoint. The resistance rate was slightly lower when the MICs were obtained by spectrophotometric readings. However, all relevant cyp51A mutants were correctly classified as resistant. Spectrophotometric determination of azole and amphotericin B MICs against A. fumigatussensu lato isolates may be a convenient alternative to visual endpoint readings.


Asunto(s)
Anfotericina B , Aspergillus fumigatus , Anfotericina B/farmacología , Antifúngicos/farmacología , Aspergillus fumigatus/genética , Azoles/farmacología , Farmacorresistencia Fúngica , Itraconazol/farmacología , Pruebas de Sensibilidad Microbiana , Voriconazol/farmacología
3.
Folia Microbiol (Praha) ; 69(1): 165-171, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-38148373

RESUMEN

Candida haemulonii complex (Candida haemulonii [I], Candida duobushaemulonii [II], and Candida haemulonii var. vulnera [III]) has become relevant in recent times, not so much because of a high incidence in human clinical sample cultures but because of its remarkable antifungal resistance. The objective of this study was to evaluate several methods for the identification of this uncommon species of Candida. Ten isolates of C. haemulonii were identified by biochemical and proteomic methods, and their antifungal susceptibility testing was performed by both commercial and reference methods. MALDI-TOF MS (Vitek MS and Vitek MS PRIME) and Vitek2 correctly identified these genera but API method did not. There was a good correlation between the commercial methods and the reference methods for the AST. In conclusion Vitek MS, Vitek MS PRIME, and Vitek2 systems, but not API32C, are reliable for identification of C. haemulonii complex. Furthermore, MALDI-TOF MS systems could identify to the subspecies level. Commercial methods for antifungal susceptibility testing are valid for the study of this species and confirm amphotericin B and to azole resistance.


Asunto(s)
Antifúngicos , Saccharomycetales , Humanos , Antifúngicos/farmacología , Proteómica , Candida , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción/métodos
4.
Lancet Infect Dis ; 24(4): 375-385, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38215770

RESUMEN

BACKGROUND: De-escalation from broad-spectrum to narrow-spectrum antibiotics is considered an important measure to reduce the selective pressure of antibiotics, but a scarcity of adequate evidence is a barrier to its implementation. We aimed to determine whether de-escalation from an antipseudomonal ß-lactam to a narrower-spectrum drug was non-inferior to continuing the antipseudomonal drug in patients with Enterobacterales bacteraemia. METHODS: An open-label, pragmatic, randomised trial was performed in 21 Spanish hospitals. Patients with bacteraemia caused by Enterobacterales susceptible to one of the de-escalation options and treated empirically with an antipseudomonal ß-lactam were eligible. Patients were randomly assigned (1:1; stratified by urinary source) to de-escalate to ampicillin, trimethoprim-sulfamethoxazole (urinary tract infections only), cefuroxime, cefotaxime or ceftriaxone, amoxicillin-clavulanic acid, ciprofloxacin, or ertapenem in that order according to susceptibility (de-escalation group), or to continue with the empiric antipseudomonal ß-lactam (control group). Oral switching was allowed in both groups. The primary outcome was clinical cure 3-5 days after end of treatment in the modified intention-to-treat (mITT) population, formed of patients who received at least one dose of study drug. Safety was assessed in all participants. Non-inferiority was declared when the lower bound of the 95% CI of the absolute difference in cure rate was above the -10% non-inferiority margin. This trial is registered with EudraCT (2015-004219-19) and ClinicalTrials.gov (NCT02795949) and is complete. FINDINGS: 2030 patients were screened between Oct 5, 2016, and Jan 23, 2020, of whom 171 were randomly assigned to the de-escalation group and 173 to the control group. 164 (50%) patients in the de-escalation group and 167 (50%) in the control group were included in the mITT population. 148 (90%) patients in the de-escalation group and 148 (89%) in the control group had clinical cure (risk difference 1·6 percentage points, 95% CI -5·0 to 8·2). The number of adverse events reported was 219 in the de-escalation group and 175 in the control group, of these, 53 (24%) in the de-escalation group and 56 (32%) in the control group were considered severe. Seven (5%) of 164 patients in the de-escalation group and nine (6%) of 167 patients in the control group died during the 60-day follow-up. There were no treatment-related deaths. INTERPRETATION: De-escalation from an antipseudomonal ß-lactam in Enterobacterales bacteraemia following a predefined rule was non-inferior to continuing the empiric antipseudomonal drug. These results support de-escalation in this setting. FUNDING: Plan Nacional de I+D+i 2013-2016 and Instituto de Salud Carlos III, Subdirección General de Redes y Centros de Investigación Cooperativa, Ministerio de Ciencia, Innovación y Universidades, Spanish Network for Research in Infectious Diseases; Spanish Clinical Research and Clinical Trials Platform, co-financed by the EU; European Development Regional Fund "A way to achieve Europe", Operative Program Intelligence Growth 2014-2020.


Asunto(s)
Bacteriemia , beta-Lactamas , Humanos , beta-Lactamas/efectos adversos , Antibacterianos/efectos adversos , Ceftriaxona , Ertapenem , Bacteriemia/tratamiento farmacológico , Resultado del Tratamiento
5.
Enferm Infecc Microbiol Clin (Engl Ed) ; 41(4): 211-214, 2023 04.
Artículo en Inglés | MEDLINE | ID: mdl-36610831

RESUMEN

INTRODUCTION: The role of Aeromonas species in gastrointestinal disease is controversial. The aim of this study was to know the epidemiological distribution of Aeromonas spp. isolated from stool in our health area, determine the existence of diarrhea as a significant symptom, identification of existing species in our environment and association as co-pathogen. METHODS: It was a retrospective descriptive study of isolates of Aeromonas spp. in feces (2016-2020). The protocol for these isolates included coproculture, identification by MALDI-TOF (Vitek-MS®, BioMerieux) and confirmation by multiplex PCR. RESULTS: A total of 366 Aeromonas spp. isolates were analyzed being Aeromonas caviae the most prevalent species (289, 78.7%). A total of 58 (15.8%) co-infections were identified, being more frequent in pediatric age (49;84.5%) (p=0.01) and mostly associated with Campylobacter spp. DISCUSSION: Aeromonas spp. prove to be a gastrointestinal pathogen more frequently associated with co-infections in pediatric age, evidencing its appearance especially with Campylobacter spp.


Asunto(s)
Aeromonas , Coinfección , Niño , Humanos , Centros de Atención Terciaria , Estudios Retrospectivos , España , Heces
6.
Artículo en Inglés | MEDLINE | ID: mdl-36707286

RESUMEN

BACKGROUND: The incidence of Campylobacter coli has increased and with greater resistance to antibiotics than Campylobacter jejuni. OBJECTIVES: To determine the epidemiology distribution of Campylobacter spp. in our health area, and the sensitivity to commonly tested antibiotics. METHODS: Retrospective descriptive study of cases of campylobacteriosis (2016-2020) recovered from stool cultures as laboratory routine protocol. Sensitivity was tested following EUCAST recommendations. RESULTS: Of 1319 campylobacteriosis (C. jejuni 87.7%, C. coli 12.3%) we found a decrease in C. jejuni cases in 2019, and an increase in C. coli. Statistically significant differences were seen in age and gender distribution. The resistance percentages have generally decreased, with higher percentages of resistance in C. coli than in C. jejuni, being significant for erythromycin. CONCLUSIONS: There is not an increase of C. jejuni and its resistance but there is a not alarming increase of incidence of C. coli and its resistance in our health area.


Asunto(s)
Infecciones por Campylobacter , Campylobacter jejuni , Gastroenteritis , Humanos , Infecciones por Campylobacter/epidemiología , España/epidemiología , Centros de Atención Terciaria , Estudios Retrospectivos , Farmacorresistencia Bacteriana , Antibacterianos/farmacología , Antibacterianos/uso terapéutico
7.
Enferm Infecc Microbiol Clin (Engl Ed) ; 41(10): 625-628, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-36842908

RESUMEN

INTRODUCTION: The role of Aeromonas species in gastrointestinal disease is controversial. The aim was to analyze not only the virulence genes between different species of Aeromonas isolated from feces, but the distribution of these virulence genes between enterotoxigenic strains and co-pathogen strains. METHODS: Retrospective study of isolates of Aeromonas spp. in feces (2016-2021). The protocol included coproculture, identification by MALDI-TOF and confirmation by multiplex PCR. SPSS Statistics program was used. RESULTS: A total of 288 strains were studied for the virulence genes between different species of Aeromonas. To compare virulence genes between Aeromonas as co-pathogen and those isolated alone, 218 strains of the global set were used; 52 as co-pathogens compared with 166 Aeromonas without associated pathogen as controls. CONCLUSIONS: We found no significant differences in the distribution of virulence genes versus co-existence of co-pathogens or not. A. hydrophila is the potentially most virulent species of our set.


Asunto(s)
Aeromonas , Aeromonas/genética , Virulencia/genética , Estudios Retrospectivos , España/epidemiología , Heces
8.
Enferm Infecc Microbiol Clin (Engl Ed) ; 41(3): 169-172, 2023 03.
Artículo en Inglés | MEDLINE | ID: mdl-36870733

RESUMEN

BACKGROUND: Arcobacter butzleri is a gram-negative rod, with microaerobic growth at an optimal temperature of 37°C. It was reported to be the fourth most common Campylobacter-like organism isolated from patients with diarrhoea. OBJECTIVE: Characterise a potential outbreak of A. butzleri detected in a short period of time in the University Hospital Marqués de Valdecilla. METHODS: Eight strains of A. butzleri were detected in our hospital in only two months. Isolates were identified by MALDI-TOF MS system and 16S rDNA sequencing. Enterobacterial repetitive intergenic consensus-PCR (ERIC-PCR) and Pulsed Field Gel Electrophoresis (PFGE) were carried out to assess clonal relationship. Gradient strips (Etest) were used to determine susceptibility by agar diffusion. RESULTS: ERIC-PCR and PFGE confirmed the lack of clonal relationship between strains. Erythromycin or ciprofloxacin might be appropriate for antibiotic treatment of infections. CONCLUSIONS: A. butzleri is an emerging pathogen with increasing incidence, and may be underestimated.


Asunto(s)
Arcobacter , Campylobacter , Humanos , Ciprofloxacina , Brotes de Enfermedades , Enterobacteriaceae , Hospitales Universitarios
9.
Artículo en Inglés | MEDLINE | ID: mdl-36759059

RESUMEN

INTRODUCTION: The correct identification of the species within the Candida parapsilosis complex has become relevant due to the resistance of Candida metapsilosis to antifungals. We describe the characteristics of the Candida parapsilosis complex isolates, with respect to antifungal resistance and biofilm formation. METHODS: We perform a descriptive cross-sectional study in 30 strains, collected in a tertiary hospital. All strains, were identified by Vitek2, Vitek-MS™ systems and by ITS sequencing. The antifungal susceptibility profile was obtained with Sensititre™ panels, while biomass production and metabolic activity were quantified by means of crystal violet and XTT reduction assay, respectively. RESULTS: There was a 100% correlation between Vitek-MS™ and ITS sequencing. All isolates were susceptible to the nine antifungals tested. The metabolic activity and biomass production tests did not show any difference among the subtypes. CONCLUSIONS: The Vitek-MS™ system provides acceptable identification. We did not find significant differences neither in azole resistance nor in biofilm formation.


Asunto(s)
Antifúngicos , Candida parapsilosis , Antifúngicos/farmacología , Candida , Virulencia , Centros de Atención Terciaria , España , Estudios Transversales , Pruebas de Sensibilidad Microbiana
10.
Spectrochim Acta A Mol Biomol Spectrosc ; 290: 122270, 2023 Apr 05.
Artículo en Inglés | MEDLINE | ID: mdl-36580749

RESUMEN

One of the problems that most affect hospitals is infections by pathogenic microorganisms. Rapid identification and adequate, timely treatment can avoid fatal consequences and the development of antibiotic resistance, so it is crucial to use fast, reliable, and not too laborious techniques to obtain quick results. Raman spectroscopy has proven to be a powerful tool for molecular analysis, meeting these requirements better than traditional techniques. In this work, we have used Raman spectroscopy combined with machine learning algorithms to explore the automatic identification of eleven species of the genus Candida, the most common cause of fungal infections worldwide. The Raman spectra were obtained from more than 220 different measurements of dried drops from pure cultures of each Candida species using a Raman Confocal Microscope with a 532 nm laser excitation source. After developing a spectral preprocessing methodology, a study of the quality and variability of the measured spectra at the isolate and species level, and the spectral features contributing to inter-class variations, showed the potential to discriminate between those pathogenic yeasts. Several machine learning and deep learning algorithms were trained using hyperparameter optimization techniques to find the best possible classifier for this spectral data, in terms of accuracy and lowest possible overfitting. We found that a one-dimensional Convolutional Neural Network (1-D CNN) could achieve above 80 % overall accuracy for the eleven classes spectral dataset, with good generalization capabilities.


Asunto(s)
Candida , Espectrometría Raman , Algoritmos , Aprendizaje Automático , Redes Neurales de la Computación
11.
Artículo en Inglés, Español | MEDLINE | ID: mdl-32307128

RESUMEN

INTRODUCTION: Acinetobacter is a genus that comprises a group of opportunistic pathogens responsible for a variety of nosocomial infections. The Acinetobacter calcoaceticus-Acinetobacter baumannii (Acb) complex includes some species of clinical importance, mainly A. baumannii, A. pittii and A. nosocomialis, which share phenotypic similarities that make it very difficult to distinguish between them using a phenotypic approach. The aim of this study was to evaluate two commercial matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) systems for the identification of different Acinetobacter species, with a special focus among those belonging to the Acb complex. METHODS: One hundred and fifty-six Acinetobacter spp. clinical strains, identified by amplified ribosomal DNA restriction analysis (ARDRA) and rpoB gene sequencing, were analysed by two different MALDI-TOF systems. RESULTS: Considering only the 144 strains of the Acb complex evaluated in this study, the Vitek-MS™ and Microflex LT™ systems correctly identified 129 (89.6%) and 143 (99.3%) strains, respectively. CONCLUSION: After analysing 156 strains belonging to Acinetobacter spp., both Vitek-MS™ and Microflex LT™ proved to be rapid and accurate systems for the identification of Acb complex species showing a good correlation. However, both manufacturers should improve their databases to include new species in them.


Asunto(s)
Infecciones por Acinetobacter , Acinetobacter calcoaceticus , Infecciones por Acinetobacter/diagnóstico , Acinetobacter calcoaceticus/genética , Técnicas Bacteriológicas , ADN Ribosómico , Humanos , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
12.
J Clin Med ; 9(11)2020 Nov 06.
Artículo en Inglés | MEDLINE | ID: mdl-33171962

RESUMEN

In liver transplant (LT) recipients, Pneumocystis jirovecii pneumonia (PJP) is most frequently reported before 1992 when immunosuppressive regimens were more intense. It is uncertain whether universal PJP prophylaxis is still applicable in the contemporary LT setting. We aimed to examine the incidence of PJP in LT recipients followed at our institution where routine prophylaxis has never been practiced and to define the prophylaxis strategies currently employed among LT units in Spain. All LT performed from 1990 to October 2019 were retrospectively reviewed and Spanish LT units were queried via email to specify their current prophylaxis strategy. During the study period, 662 LT procedures were carried out on 610 patients. Five cases of PJP were identified, with only one occurring within the first 6 months. The cumulative incidence and incidence rate were 0.82% and 0.99 cases per 1000 person transplant years. All LT units responded, the majority of which provide prophylaxis (80%). Duration of prophylaxis, however, varied significantly. The low incidence of PJP in our unprophylaxed cohort, with most cases occurring beyond the usual recommended period of prophylaxis, questions a one-size-fits-all approach to PJP prophylaxis. A significant heterogeneity in prophylaxis strategies exists among Spanish LT centres.

13.
JMM Case Rep ; 6(2): e005175, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30886723

RESUMEN

INTRODUCTION: Nocardia nova complex has been associated with infections in both immunocompetent and immunocompromised patients. Infection can be localized or disseminated, affecting skin and soft tissues, the respiratory system, bones and joints, the circulatory system and especially the central nervous system. Ocular infections such as keratitis, scleritis, conjunctivitis, dacryocystitis, orbital cellulitis and endophthalmitis due to Nocardia spp. are infrequently reported, and usually described after penetrating corneal trauma or ocular contact with plants and soils. CASE PRESENTATION: An immunocompetent male presented with a history of penetrating ocular trauma that had evolved to infectious endophthalmitis, which was refractory to different antibiotic treatments. No micro-organisms were isolated from repeated conjunctival smear and corneal scraping cultures between the ocular trauma (August 2014) and the endophthalmitis diagnosis (November 2015). After this period, N. nova sensu stricto was isolated in aqueous humour aspirate. Treatment was adjusted and clinical improvement was obtained after an adequate microbiological procedure, including an optimal sampling and an antimicrobial-susceptibility testing report. CONCLUSION: Nocardia identification to the species level and performance of antimicrobial-susceptibility tests are both essential tools for treatment adjustment and clinical improvement.

14.
Rev Iberoam Micol ; 35(3): 130-133, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30343836

RESUMEN

BACKGROUND: Matrix-assisted laser desorption-time of flight mass spectrometry (MALDI-TOF-MS) represents a revolution in the identification of microorganisms of clinical interest. Many studies have confirmed the accuracy and fastness of this tool with routine strains. AIMS: To identify clinical isolates of Candida from patients diagnosed with candidemia. METHODS: Vitek-MS™ system was used with a collection of 298 blood isolates of the genus Candida represented by 9 different species. Sequencing of the internal transcribed spacer (ITS) region of ribosomal DNA cluster was used as the reference method. RESULTS: The results of Vitek-MS™ were concordant with those obtained with the reference method for 279 (93.62%) isolates (Kappa coefficient (κ)=0.91). Vitek-MS™ misidentified 10 (3.36%) isolates and did not identify 9 (3.02%) isolates. CONCLUSIONS: This study determines the potential of Vitek-MS™ in yeast identification, being a reliable and fast alternative in the clinical laboratory, with an acceptable sensitivity of 82% (IC 95%: 70-90.6%), in comparison with a 100% (IC 95%: 92.9-100%) sensitivity of the conventional methods.


Asunto(s)
Candida/aislamiento & purificación , Candidemia/microbiología , Humanos , Micología/métodos , Estudios Retrospectivos
16.
Rev. iberoam. micol ; 35(3): 130-133, jul.-sept. 2018. tab
Artículo en Inglés | IBECS (España) | ID: ibc-179572

RESUMEN

Background: Matrix-assisted laser desorption-time of flight mass spectrometry (MALDI-TOF-MS) represents a revolution in the identification of microorganisms of clinical interest. Many studies have confirmed the accuracy and fastness of this tool with routine strains. Aims: To identify clinical isolates of Candida from patients diagnosed with candidemia. Methods: Vitek-MS(TM) system was used with a collection of 298 blood isolates of the genus Candida represented by 9 different species. Sequencing of the internal transcribed spacer (ITS) region of ribosomal DNA cluster was used as the reference method. Results: The results of Vitek-MS(TM) were concordant with those obtained with the reference method for 279 (93.62%) isolates (Kappa coefficient (κ)=0.91). Vitek-MS(TM) misidentified 10 (3.36%) isolates and did not identify 9 (3.02%) isolates. Conclusions: This study determines the potential of Vitek-MS(TM) in yeast identification, being a reliable and fast alternative in the clinical laboratory, with an acceptable sensitivity of 82% (IC 95%: 70-90.6%), in comparison with a 100% (IC 95%: 92.9-100%) sensitivity of the conventional methods


Antecedentes: La espectrometría de absorción de masas mediante láser asistido por una matriz (MALDI-TOF MS) representa una revolución en la identificación de microorganismos de interés clínico. Muchos estudios han confirmado la exactitud y rapidez de esta herramienta con aislamientos de la rutina clínica diaria. Objetivos: Identificar aislamientos clínicos del género Candida procedentes de pacientes con un diagnóstico de candidemia. Métodos: Se utilizó el sistema VITEK(R) MS con un grupo de 298 aislamientos sanguíneos del género Candida, representado por 9 especies diferentes. Se utilizó como método de referencia la secuenciación de la región del espaciador de transcripción interno (ITS, por sus siglas en inglés) del ADN ribosómico. Resultados: Los resultados de VITEK(R) MS coincidieron con aquellos obtenidos por el método de referencia en 279 (93,62%) de los aislamientos (coeficiente Kappa [κ]=0,91), mientras que clasificó erróneamente a 10 (3,36%) aislamientos y no identificó otros 9 (3,02%). Conclusiones: VITEK(R) MS es una alternativa fiable y rápida en la identificación de levaduras en el laboratorio clínico, con una sensibilidad aceptable del 82% (IC 95%:70-90,6%) en comparación con una sensibilidad del 100% (IC 95%:92,9-100%) de los métodos convencionales


Asunto(s)
Humanos , Masculino , Femenino , Recién Nacido , Lactante , Preescolar , Niño , Adolescente , Adulto Joven , Adulto , Persona de Mediana Edad , Anciano , Anciano de 80 o más Años , Candidemia/microbiología , Candida/clasificación , Levaduras/clasificación , Técnicas de Tipificación Micológica/métodos , Candida/aislamiento & purificación , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción/métodos , Estudios Retrospectivos , Sensibilidad y Especificidad
17.
Rev. esp. quimioter ; 29(5): 265-268, oct. 2016. tab
Artículo en Español | IBECS (España) | ID: ibc-156282

RESUMEN

Introducción. La identificación rápida de patógenos es esencial para el diagnóstico de las infecciones gastrointestinales. La espectrometría de masas matrix-assisted laser desorption/ionization time of flight (MALDI-TOF) ha demostrado ser eficaz y rápida en la identificación de microorganismos. El objetivo de este estudio fue evaluar la correlación entre Vitek-MSTM y los métodos convencionales para la identificación de bacterias causantes de infección gastrointestinal. Material y métodos. Se han identificado un total de 329 patógenos gastrointestinales empleando, simultáneamente, Vitek-MSTM (v2 SARAMIS MS-ID, BioMérieux, Marcy-I´Étoile, Francia) y métodos diagnósticos convencionales. En los casos de discrepancia se realizó secuenciación del gen 16SrRNA. Resultados. La correlación entre Vitek-MSTM y los métodos diagnósticos convencionales fue del 100% excepto para Yersinia enterocolitica (94,1%), Helicobacter pylori (10%) y Aeromonas veronii (0%). Conclusiones. Vitek-MSTM es un método rápido y útil en la identificación de bacterias enteropatógenas. Es necesario mejorar las prestaciones del sistema para H. pylori y A. veronii (AU)


Introduction. Rapid identification of pathogens is essential for the diagnosis of gastrointestinal infections. Matrix-assisted laser desorption/ionization time of flight (MALDI-TOF) mass spectrometry has shown to be effective and fast for the identification of microorganisms. The objective of this study was to evaluate the correlation between Vitek-MSTM and conventional methods for bacterial identification causing gastrointestinal infection. Material and methods. A total of 329 gastrointestinal pathogens were identified using Vitek-MSTM (v2 SARAMIS MS -ID, bioMérieux, Marcy-I´Étoile, France) and routine diagnostic methods simultaneously. In cases of discrepancy 16SrRNA gene sequencing was performed. Results. The correlation between Vitek-MSTM and diagnostic methods was 100% except for Yersinia enterocolitica (94.1%), Helicobacter pylori (10%) and Aeromonas veronii (0 %). Conclusions. Vitek-MSTM is a quick and useful method for identification of enterophatogenic bacteria. It is necessary to improve the performance of the system for the identification of H. pylori and A. veronii (AU)


Asunto(s)
Humanos , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción/métodos , Enfermedades Gastrointestinales/microbiología , Helicobacter pylori/patogenicidad , Infecciones por Helicobacter/microbiología , Salmonella/patogenicidad , Infecciones por Salmonella/microbiología , Yersinia/patogenicidad , Yersiniosis/microbiología
18.
Artículo en Inglés | IBECS (España) | ID: ibc-199908

RESUMEN

INTRODUCTION: Acinetobacter is a genus that comprises a group of opportunistic pathogens responsible for a variety of nosocomial infections. The Acinetobacter calcoaceticus-Acinetobacter baumannii (Acb) complex includes some species of clinical importance, mainly A. baumannii, A. pittii and A. nosocomialis, which share phenotypic similarities that make it very difficult to distinguish between them using a phenotypic approach. The aim of this study was to evaluate two commercial matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) systems for the identification of different Acinetobacter species, with a special focus among those belonging to the Acb complex. METHODS: One hundred and fifty-six Acinetobacter spp. clinical strains, identified by amplified ribosomal DNA restriction analysis (ARDRA) and rpoB gene sequencing, were analysed by two different MALDI-TOF systems. RESULTS: Considering only the 144 strains of the Acb complex evaluated in this study, the Vitek-MS(TM) and Microflex LT(TM) systems correctly identified 129 (89.6%) and 143 (99.3%) strains, respectively. CONCLUSION: After analysing 156 strains belonging to Acinetobacter spp., both Vitek-MS(TM) and Microflex LT(TM) proved to be rapid and accurate systems for the identification of Acb complex species showing a good correlation. However, both manufacturers should improve their databases to include new species in them


INTRODUCCIÓN: Acinetobacter es un género que comprende un grupo de patógenos oportunistas responsables de varias infecciones nosocomiales. El complejo Acinetobacter calcoaceticus-Acinetobacter baumannii (Acb) reúne algunas especies de importancia clínica, principalmente A. baumannii, A. pittii y A. nosocomialis, que comparten similitudes fenotípicas que hacen muy difícil poder discriminar entre ellas utilizando un enfoque fenotípico. El objetivo de este estudio fue evaluar 2 sistemas comerciales de espectrometría de masas de ionización por láser asistido con una matriz (MALDI-TOF MS) para la identificación de diferentes especies de Acinetobacter, con un enfoque especial entre los que pertenecen al complejo Acb. MÉTODOS: Analizamos 156 cepas clínicas de Acinetobacter spp., identificadas mediante análisis de restricción de ADN ribosomal amplificado (ARDRA) y secuenciación del gen rpoB, por 2 sistemas diferentes de MALDI-TOF. RESULTADOS: Teniendo en cuenta solo las 144 cepas del complejo Acb evaluadas en este estudio, los sistemas Vitek(R) MS y Microflex(R) LT identificaron correctamente 129 (89,6%) y 143 (99,3%) cepas, respectivamente. CONCLUSIÓN: Después de analizar 156 cepas pertenecientes a Acinetobacter spp., Vitek(R) MS y Microflex(R) LT demostraron ser sistemas rápidos y precisos para la identificación de especies del complejo Acb mostrando una buena correlación. Sin embargo, ambos fabricantes deberían mejorar sus bases de datos incluyendo nuevas especies en ellas


Asunto(s)
Humanos , Acinetobacter baumannii/aislamiento & purificación , Infecciones por Acinetobacter/diagnóstico , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción/métodos , Infecciones por Acinetobacter/microbiología , ADN Bacteriano/análisis , Técnicas Bacteriológicas , ADN Ribosómico/análisis , Acinetobacter calcoaceticus/aislamiento & purificación
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