Rare immunofluorescence patterns of autoantibodies on HEp-2 cells defined by ICAP identify different autoimmune diseases in the absence of associated specificities: a Spanish multicentre study.

OBJECTIVES: ANA are the most extensively used test for the diagnosis of systemic autoimmune diseases. However, testing by indirect immunofluorescence assays (IIFAs) on HEp-2 cells, the gold standard test, is time-consuming and needs expertise. Thus there is a trend to replace it with other automated solid-phase assays directed against specific ANA. Nonetheless, the Hep-2 cell is an autoantigen array and ANA have been classified into 29 types, some of them with no clear association with a specificity to be detected. It is especially in these uncommon patterns where no clinical relationship is found and no antigenic specificity is detected. Here we retrospectively collected clinical data from patients with confirmed uncommon HEp-2 IIFA patterns to search for an associated clinical condition. METHODS: We conducted an observational retrospective study including 608 patients with organ-specific and non-organ-specific autoimmune diseases (OSADs and NOSADs, respectively) with a confirmed rare pattern of ANA detected by IIFA on HEp-2 cells in the routine practice of the Spanish European Autoantibodies Standardization Initiative laboratories. Inclusion criteria are the existence of a minimum follow-up of 2 years and the availability of clinical data. RESULTS: Nuclear patterns were more frequent in SLE (P = 0.001) and SS (P = 0.001), whereas the cytoplasmic ones were significantly higher in SSc (P = 0.022) and inflammatory myositis (P = 0.016). Mitotic patterns did not show any preferences for a specific disease and 62.7% of them corresponded to the nuclear mitotic apparatus pattern (AC-26). The most frequent NOSADs in patients with the AC-26 pattern were SLE (28.6%), SS (11.9%) and RA (11.9%). The cytoplasmic HEp-2 IIFA patterns were equally distributed in both groups of patients. In the OSAD patients there was no predominant pattern, except for AC-6 in primary biliary cholangitis due to Sp-100 antibodies (P < 0.001). CONCLUSION: Detection of infrequent ANA might be a unique finding with no disease-associated specificities and could lead to the suspicion of an autoimmune disease.

Large tree mortality leads to major aboveground biomass decline in a tropical forest reserve.

Humans are transforming the ecology of the Earth through rapid changes in land use and climate. These changes can affect tropical forest structure, dynamics and diversity. While numerous studies have focused on diversity metrics, other aspects of forest function, such as long-term biomass dynamics, are often less considered. We evaluated plant community structure change (i.e., abundance, diversity, composition, and aboveground biomass) in a 2.25 ha forest dynamics plot located within a ~ 365 ha reserve in southern Costa Rica. We censused, mapped and identified to species all plants ≥ 5 cm diameter at breast height (DBH) in three surveys spanning 2010-2020. While there were no changes in late-successional species diversity, there were marked changes in overall species composition and biomass. Abundance of large (≥ 40 cm DBH) old-growth dense-wooded trees (e.g., Lauraceae, Rosaceae) decreased dramatically (27%), leading to major biomass decline over time, possibly driven by recent and recurrent drought events. Gaps created by large trees were colonized by early-successional species, but these recruits did not make up for the biomass lost. Finally, stem abundance increased by 20%, driven by increasing dominance of Hampea appendiculata. While results suggest this reserve may effectively conserve overall plant diversity, this may mask other key shifts such as large aboveground biomass loss. If this pattern is pervasive across tropical forest reserves, it could hamper efforts to preserve forest structure and ecosystem services (e.g., carbon storage). Monitoring programs could better assess carbon trends in reserves over time simply by tracking large tree dynamics.

Designing optimal human-modified landscapes for forest biodiversity conservation.

Agriculture and development transform forest ecosystems to human-modified landscapes. Decades of research in ecology have generated myriad concepts for the appropriate management of these landscapes. Yet, these concepts are often contradictory and apply at different spatial scales, making the design of biodiversity-friendly landscapes challenging. Here, we combine concepts with empirical support to design optimal landscape scenarios for forest-dwelling species. The supported concepts indicate that appropriately sized landscapes should contain ≥ 40% forest cover, although higher percentages are likely needed in the tropics. Forest cover should be configured with c. 10% in a very large forest patch, and the remaining 30% in many evenly dispersed smaller patches and semi-natural treed elements (e.g. vegetation corridors). Importantly, the patches should be embedded in a high-quality matrix. The proposed landscape scenarios represent an optimal compromise between delivery of goods and services to humans and preserving most forest wildlife, and can therefore guide forest preservation and restoration strategies.

Regional context and dispersal mode drive the impact of landscape structure on seed dispersal.

Land-use change modifies the spatial structure of tropical landscapes, shaping global biodiversity patterns. Yet, it remains unknown how key ecological processes, such as seed dispersal, can be affected by changes in landscape patterns, and whether such effects differ among regions with different climate and disturbance intensity. We assessed the effect of five landscape metrics (forest cover, matrix openness, forest edge density, forest fragmentation, and interpatch distance) on the seed rain recorded in two Mexican fragmented regions (20 forest sites per region): the more deforested, defaunated, and windy Los Tuxtlas rainforest (LTX), and the better-preserved Lacandona rainforest (LAC). We quantified the proportions of dispersed tree species and their seeds, separately evaluating wind- and animal-dispersed species. Our findings support the hypothesis that forest loss is more important than fragmentation per se, negatively impacting the seed rain in both regions. As expected, landscape patterns were comparatively more important for wind-dispersed seeds in LTX, probably because of stronger wind events in this region. Specifically, proportions of wind-dispersed seeds and species decreased with increasing edge density, suggesting that forest edges prevent dispersal of wind-dispersed species, which may occur if edges create physical barriers that limit wind flow. This pattern can also be caused by source limitation in landscapes with more forest edges, as tree mortality rates usually increase at forest edges. The wind-dispersed seed rain was also positively related to matrix openness, especially in LTX, where wind flow can be favored by the dominance of treeless anthropogenic matrices. Surprisingly, the proportion of animal-dispersed seeds in LTX was positively related to matrix openness and patch isolation, suggesting that seed dispersers in more deforested regions may be forced to concentrate in isolated patches and use the available habitat more intensively. Yet, as expected, patch isolation limited wind-dispersed seeds in LAC. Therefore, dispersal (and potentially regeneration) of wind-dispersed trees is favored in regions exposed to stronger wind events, especially in landscapes dominated by regularly shaped patches surrounded by open areas. Conversely, animal-dispersed seeds are primarily favored by increasing forest cover. Preventing forest loss is therefore critical to promote animal seed dispersal and forest recovery in human-modified rainforests.

Maintenance of different life stages of old-growth forest trees in deforested tropical landscapes.

Tropical tree species are increasingly being pushed to inhabit deforested landscapes. The habitat amount hypothesis posits that, in remaining forest patches, species diversity in equal-sized samples decreases with decreasing forest cover in the surrounding landscape. We tested this prediction by taking into account three important factors that can affect species responses to forest loss. First, forest loss effects can be linear (proportional) or nonlinear, as there can be threshold values of forest loss beyond which species extirpation may be accelerated. Second, such effects are usually scale dependent and may go unnoticed if assessed at suboptimal scales. Finally, species extirpation may take decades to become evident, so the effects of forest loss can be undetected when assessing long-lived organisms, like adult old-growth forest trees. Here, we evaluated the linear and nonlinear effects of landscape forest loss across different spatial scales on site-scale abundance and diversity of old-growth forest trees, separately for four plant-life stages (seeds, saplings, juveniles, and adults) in two rainforest regions with different levels of deforestation. We expected stronger (and negative) forest loss effects on early plant-life stages, especially in the region with the highest deforestation. Surprisingly, in 13 of 16 study cases (2 responses × 4 life stages × 2 regions), null models showed higher empirical support than linear and nonlinear models at any scale. Therefore, the species richness and abundance of local tree assemblages seem to be weakly affected by landscape-scale forest loss independently of the spatial scale, life stage, and region. Yet, as expected, the predictive power of forest cover was relatively lower in the least deforested region. Our findings suggest that landscape-scale forest loss is poorly related to site-scale processes, such as seed dispersal and seedling recruitment, or, at least, such effects are too small to shape the abundance and diversity of tree assemblages within forest patches. Therefore, our findings do not support the most important prediction of the habitat amount hypothesis but imply that, on a per-area basis, a unit of habitat (forest) in a highly deforested landscape has a conservation value similar to that of a more forested one, particularly in moderately deforested rainforests.

Bird community effects on avian malaria infections.

In community assembly processes, interspecific interactions play an important role in shaping community diversity, especially at the local scale. Changes in species richness or abundance can modify local infectious disease dynamics, either reducing or increasing the risk of transmission within the community. This study evaluates the effects of bird community on avian haemosporidians infections in a Neotropical region. Bird samples were collected from areas surrounding three dams, and molecular analysis were performed to identify blood-parasitic haemosporidia infecting the birds. Generalized linear models were used to analyze the relationships between the bird community and the prevalence, number of infections, and richness of avian haemosporidian lineages. Non-significant effects of bird community dominance and richness on the prevalence of avian parasites and the number of infections of Haemoproteus were found. However, there was evidence of an amplification effect. Host dominance was associated with the total number of infections, the number Plasmodium infections and the expected richness of Plasmodium lineages, while the expected richness of Haemoproteus lineages was associated with the richness of bird species. These findings highlight the role of host community dominance and richness in the dynamics of parasite infections, potentially influenced by the availability of competent hosts. This study contributes significantly to our understanding of blood parasite diversity in tropical birds within a relatively understudied region of South America.

Effects of landscape structure on restoration success in tropical premontane forest.

Reversing large-scale habitat degradation and deforestation goes beyond what can be achieved by site-level ecological restoration and a landscape ecology perspective is fundamental. Here we assess the relative importance of tree cover and its configuration on forest-dependent birds and late-successional tree seedlings in restoration sites in southern Costa Rica. The abundance and species richness of birds increased in landscapes with more corridors, higher tree cover, and lower levels of fragmentation, highlighting the importance of riparian corridors for connectivity, and continuous tree cover as suitable habitat. Landscape variables affected abundance and species richness of seedlings similarly, but effects were weaker, possibly because seedlings face establishment limitation in addition to dispersal limitation. Moreover, the scale of landscape effects on seedlings was small, likely because proximal individual trees can significantly influence recruitment in restoration plots. Results underscore the importance of incorporating landscape-level metrics to restoration projects, as knowing the extent, and how the landscape may affect restoration outcomes can help to infer what kind of species will arrive to restoration plots.