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1.
Chem Commun (Camb) ; (11): 1286-7, 2003 Jun 07.
Artículo en Inglés | MEDLINE | ID: mdl-12809233

RESUMEN

Experimentally hardly accessible Jahn-Teller inversions and the influence of heteroligands on the reactivity of Cu2+ are characterized by ab initio QM/MM MD simulations of Cu2+ ion and its amino complexes in water.

2.
J Phys Chem A ; 109(20): 4437-41, 2005 May 26.
Artículo en Inglés | MEDLINE | ID: mdl-16833778

RESUMEN

Structure and dynamics investigations of Ag(+) in 18.6% aqueous ammonia solution have been carried out by means of the ab initio quantum mechanical/molecular mechanical (QM/MM) molecular dynamics (MD) simulation method. The most important region, the first solvation shell, was treated by ab initio quantum mechanics at the Restricted Hartree-Fock (RHF) level using double-zeta plus polarization basis sets for ammonia and plus ECP for Ag(+). For the remaining region in the system, newly constructed three-body corrected potential functions were used. The average composition of the first solvation shell was found to be [Ag(NH(3))(2)(H(2)O)(2.8)](+). No ammonia exchange process was observed for the first solvation shell, whereas ligand exchange processes occurred with a very short mean residence time of 1.1 ps for the water ligands. No distinct second solvation shell was observed in this simulation.


Asunto(s)
Amoníaco/química , Plata/química , Química Física/métodos , Iones , Ligandos , Modelos Químicos , Modelos Moleculares , Modelos Estadísticos , Conformación Molecular , Teoría Cuántica , Reproducibilidad de los Resultados , Factores de Tiempo , Agua/química
3.
Phys Chem Chem Phys ; 7(8): 1669-73, 2005 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-19787923

RESUMEN

Quantum-mechanics based molecular dynamics simulations were used to investigate mono-, di-, tri- and tetraamino Ni2+ complexes in water. The simulations show an enormous influence of heteroligands on the reactivity of the first solvation shell of the Ni2+ ion. Comparing 17O-NMR measurements of identical systems with our simulation results shows a 10(4) times higher mobility of water molecules in the first solvation shell obtained from QM/MM MD simulations strongly affecting biochemically important properties of Ni2+ in the aqueous environment in living organisms.


Asunto(s)
Níquel/química , Ligandos , Teoría Cuántica , Soluciones
4.
Chemphyschem ; 5(3): 342-8, 2004 Mar 19.
Artículo en Inglés | MEDLINE | ID: mdl-15067871

RESUMEN

To investigate the solvation structure of the Cu(II) ion in liquid ammonia, ab initio quantum-mechanical/molecular-mechanical (QM/MM) molecular dynamics (MD) simulations were carried out at Hartree Fock (HF) and hybrid density functional theory (B3 LYP) levels. A sixfold-coordinated species was found to be predominant in the HF case whereas five- and sixfold-coordinated complexes were obtained in a ratio 2:1 from the B3 LYP simulation. In contrast to hydrated Cu(II), which exhibits a typical Jahn-Teller distortion, the geometrical arrangement of ligand molecules in the case of ammonia can be described as a [2 + 4] ([2 + 3]) configuration with 4 (3) elongated copper-nitrogen bonds. First shell solvent exchange reactions at picosecond rate took place in both HF and B3 LYP simulations, again in contrast to the more stable sixfold-coordinated hydrate. NH3 ligands apparently lead to strongly accelerated dynamics of the Cu(II) solvate due to the "inverse" [2 + 4] structure with its larger number of elongated copper-ligand bonds. Several dynamical properties, such as mean ligand residence times or ion-ligand stretching frequencies, prove the high lability of the solvated complex.

5.
J Am Chem Soc ; 126(40): 12786-7, 2004 Oct 13.
Artículo en Inglés | MEDLINE | ID: mdl-15469268

RESUMEN

Hybrid QM/MM MD simulations including electron correlation effects at MP2 level were performed to obtain an accurate picture of the solvation structure and the Jahn-Teller effect of the Cu2+ ion.

6.
Chemphyschem ; 4(9): 931-43, 2003 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-14562438

RESUMEN

The CuII hydration shell structure has been studied by means of classical molecular dynamics (MD) simulations including three-body corrections and hybrid quantum-mechanical/molecular-mechanical (QM/MM) molecular dynamics (MD) simulations at the Hartree-Fock level. The copper(II) ion is found to be six-fold coordinated and [Cu(H2O)6]2+ exhibits a distorted octahedral structure. The QM/MM MD approach reproduces correctly the experimentally observed Jahn-Teller effect but exhibits faster inversions (< 200 fs) and a more complex behaviour than expected from experimental data. The dynamic Jahn-Teller effect causes the high lability of [Cu(H2O)6]2+ with a ligand-exchange rate constant some orders or magnitude higher than its neighbouring ions NiII and ZnII. Nevertheless, no first-shell water exchange occurred during a 30-ps simulation. The structure of the hydrated ion is discussed in terms of radial distribution functions, coordination numbers, and various angular distributions and the dynamical properties as librational and vibrational motions and reorientational times were evaluated, which lead to detailed information about the first hydration shell. Second-shell water-exchange processes could be observed within the simulation time scale and yielded a mean ligand residence time of approximelty 20 ps.

7.
J Am Chem Soc ; 125(6): 1618-24, 2003 Feb 12.
Artículo en Inglés | MEDLINE | ID: mdl-12568623

RESUMEN

Structural and dynamical properties of the transition metal ions V(2+) and Mn(2+) in aqueous solution, resulting from combined quantum mechanical (QM)/molecular mechanical (MM) molecular dynamics (MD) simulations have been compared. The necessity of polarization functions on the ligand's oxygen for a satisfactory description of such ions in aqueous solution is shown using V(2+) as test case. Radial distribution functions, coordination number distributions, and several angle distributions were pursued for a detailed structural comparison of the first hydration shells. Dynamical properties, such as the librational and vibrational motions of water molecules were evaluated by means of velocity autocorrelation functions. Approximative normal coordinate analyses were employed to calculate the rotational frequencies and vibrational motions around the three principal axes. The very low exchange rates for the first shell water exchanges only allow an investigation of the water exchange processes in the second shell, which take place within the picosecond range.


Asunto(s)
Manganeso/química , Vanadio/química , Agua/química , Cationes Bivalentes , Simulación por Computador , Modelos Químicos , Teoría Cuántica , Soluciones
8.
J Am Chem Soc ; 126(32): 9934-5, 2004 Aug 18.
Artículo en Inglés | MEDLINE | ID: mdl-15303863

RESUMEN

Structure and dynamics investigations of Au(I) ion in liquid ammonia have been performed by means of a molecular dynamics simulation based on ab initio quantum mechanical/molecular mechanical forces, where the first solvation shell was treated by quantum mechanics at Hartree-Fock level. The outer region of the system was described using a newly constructed classical three-body corrected potential. A rigid structure of the first solvation shell was observed with an average Au-N distance of 2.15 A and a coordination number of 2.0.

9.
J Am Chem Soc ; 126(8): 2582-7, 2004 Mar 03.
Artículo en Inglés | MEDLINE | ID: mdl-14982468

RESUMEN

Structure and dynamics of hydrated Au(+) have been investigated by means of molecular dynamics simulations based on ab initio quantum mechanical molecular mechanical forces at Hartree-Fock level for the treatment of the first hydration shell. The outer region of the system was described using a newly constructed classical three-body corrected potential. The structure was evaluated in terms of radial and angular distribution functions and coordination number distributions. Water exchange processes between coordination shells and bulk indicate a very labile structure of the first hydration shell whose average coordination number of 4.7 is a mixture of 3-, 4-, 5-, 6-, and 7-coordinated species. Fast water exchange reactions between first and second hydration shell occur, and the second hydration shell is exceptionally large. Therefore, the mean residence time of water molecules in the first hydration shell (5.6 ps/7.5 ps for t*= 0.5 ps/2.0 ps) is shorter than that in the second shell (9.4 ps/21.2 ps for t*= 0.5 ps/2.0 ps), leading to a quite specific picture of a "structure-breaking" effect.

10.
J Comput Chem ; 25(2): 211-7, 2004 Jan 30.
Artículo en Inglés | MEDLINE | ID: mdl-14648619

RESUMEN

Based on a systematic investigation of trajectories of ab initio quantum mechanical/molecular mechanical simulations of numerous cations in water a standardized procedure for the evaluation of mean ligand residence times is proposed. For the characterization of reactivity and structure-breaking/structure-forming properties of the ions a measure is derived from the mean residence times calculated with different time limits. It is shown that ab initio simulations can provide much insight into ultrafast dynamics that are presently not easily accessible by experiment.

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