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1.
Small ; : e2309428, 2024 Mar 26.
Artículo en Inglés | MEDLINE | ID: mdl-38529777

RESUMEN

Bismuth sulfide (Bi2S3) exhibits a direct energy bandgap and an exceptional optical absorption capability over a broadband radiation, thus presents a novel class of 2D photodetector material. The field effect transistor (FET) photodetector device is fabricated from 2D Bi2S3. An anomalous variation in the transport characteristics of 2D Bi2S3 is observed with the variation in temperature. The electrical resistance reduces by 99.26% at 10 K compared to the response at 300 K. Defects due to the bismuth and sulfur vacancies play a critical role in the dramatic behavior, which is confirmed using photoluminescence, time-resolved photoluminescence, Hall measurements, and energy dispersive X-ray spectroscopy. The density functional theory calculations provide a significant insight into the thermodynamic properties of intrinsic defects in Bi2S3. Moreover, the effect of gate bias on responsivity additionally confirms its invariance at low temperature. The Bi2S3 based FET photodetector achieves ultrahigh responsivity in the order of ≈106 A W-1 and detectivity of ≈1014 Jones. Moreover, the external quantum efficiency of ≈107% is measured in a wide spectrum of optical illumination (532 to 1064 nm) with a noise-equivalent power of 3.5 × 10-18 W/√Hz at a bias of 0.2 V. The extraordinary performance of Bi2S3 photodetector outstands 2D photodetectors.

2.
Chemistry ; 29(2): e202202956, 2023 Jan 09.
Artículo en Inglés | MEDLINE | ID: mdl-36200620

RESUMEN

A three-component, solvent-dependent, Brønsted-acid-catalyzed reaction of benzaldehydes, silyl enolates and arene nucleophiles has been developed for the synthesis of potential drug candidate 3-aryl-1-indanones. This reaction features the formation of three C-C bonds, high regioselectivity in a one-pot strategy, broad substrate generality, facile scalability (1.04g), high functional group tolerance and viable substrates. The ß-O-silyl ethers generated in-situ from the Mukaiyama aldol reaction were subjected to acid-catalyzed benzylic arylation with strong as well as weak nucleophiles, and the resultant ß,ß-diaryl esters can undergo a third C-C bond formation with excellent regioselectivity through intramolecular cyclization to afford the indanone products in the same pot. Detailed mechanistic insight leads to a feasible reaction pathway. This transformation opens up a practical and adaptable approach to producing a variety of synthetically valuable transformations and enable the synthesis of medicinally valuable (R)-tolterodine and (+)-indatraline.


Asunto(s)
Ácidos , Ésteres , Indanos , Catálisis
3.
J Org Chem ; 88(23): 16104-16115, 2023 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-37983472

RESUMEN

The facile and efficient synthesis of a unique class of 4-aryl-hydrocoumarins having enormous applications in medicinal chemistry and natural products is presented. We have for the first time developed a Brønsted acid-catalyzed, multicomponent, one-pot approach for producing various 4-aryl-coumarin derivatives. The feedstock availability of these precursors allowed access to a wide range of 2-chromanone derivatives in good to excellent yields under mild conditions. The practicality of this protocol was justified by the synthesis of bioactive compounds, late-stage functionalization of natural products, and gram-scale synthesis.

4.
J Chem Inf Model ; 63(3): 1028-1043, 2023 02 13.
Artículo en Inglés | MEDLINE | ID: mdl-36646658

RESUMEN

It is imperative to explore the gigantic available chemical space to identify new scaffolds for drug lead discovery. Identifying potent hits from virtual screening of large chemical databases is challenging and computationally demanding. Rather than the traditional two-dimensional (2D)/three-dimensional (3D) approaches on smaller chemical libraries of a few hundred thousand compounds, we screened a ZINC library of 15 million compounds using multiple computational methods. Here, we present the successful application of a virtual screening methodology that identifies several chemotypes as starting hits against lactate dehydrogenase-A (LDHA). From 29 compounds identified from virtual screening, 17 (58%) showed IC50 values < 63 µM, two showed single-digit micromolar inhibition, and the most potent hit compound had IC50 down to 117 nM. We enriched the database and employed an ensemble approach by combining 2D fingerprint similarity searches, pharmacophore modeling, molecular docking, and molecular dynamics. WaterMap calculations were carried out to explore the thermodynamics of surface water molecules and gain insights into the LDHA binding pocket. The present work has led to the discovery of two new chemical classes, including compounds with a succinic acid monoamide moiety or a hydroxy pyrimidinone ring system. Selected hits block lactate production in cells and inhibit pancreatic cancer cell lines with cytotoxicity IC50 down to 12.26 µM against MIAPaCa-2 cells and 14.64 µM against PANC-1, which, under normoxic conditions, is already comparable or more potent than most currently available known LDHA inhibitors.


Asunto(s)
Simulación de Dinámica Molecular , Neoplasias Pancreáticas , Humanos , Simulación del Acoplamiento Molecular , Lactato Deshidrogenasa 5 , Bibliotecas de Moléculas Pequeñas/farmacología , Bibliotecas de Moléculas Pequeñas/química , Neoplasias Pancreáticas/tratamiento farmacológico
5.
Appl Microbiol Biotechnol ; 107(12): 4009-4024, 2023 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-37154908

RESUMEN

Smokeless tobacco (SLT) is certainly one of the major risk factors associated with oral cancer. Disruption of oral microbiota-host homeostasis contributes to the progression of oral cancer. Here, we profiled SLT users' oral bacterial composition and inferred their functions by sequencing 16S rDNA V3-V4 region and PICRUSt2, respectively. Oral bacteriome of SLT users (with or without oral premalignant lesions), SLT with alcohol co-users, and non-SLT consumers were compared. Oral bacteriome is shaped primarily by SLT use and the incidence of oral premalignant lesions (OPL). A significantly increased bacterial α-diversity was monitored in SLT users with OPL compared to in SLT users without OPL and non-users, whereas ß-diversity was significantly explained by OPL status. Overrepresented genera were Prevotella, Fusobacterium, Veillonella, Haemophilus, Capnocytophaga, and Leptotrichia in SLT users having OPL. LEfSe analysis identified 16 genera as a biomarker that were differentially abundant in SLT users having OPL. The functional prediction of genes significantly increased for several metabolic pathways, more importantly, were nitrogen metabolism, nucleotide metabolism, energy metabolism, and biosynthesis/biodegradation of secondary metabolites in SLT users having OPL. Furthermore, HPV-16 and EBV, but not HPV-18, were considerably connected with the SLT users having OPL. Overall, this study provides evidence that SLT utilization and OPL development are associated with oral bacteriome dysbiosis indicating the enrichment of bacterial species known for their contribution to oral carcinogenesis. Therefore, delineating the cancer-inducing bacterial population in SLT users will facilitate the future development of microbiome-targeted therapies. KEY POINTS: • SLT consumption significantly elevates oral bacterial diversity. • Prevalent significant genera are Prevotella, Veillonella, and Haemophilus in SLT users with OPL. • SLT promotes the occurrence of the cancer-inducing bacterial population.


Asunto(s)
Neoplasias de la Boca , Tabaco sin Humo , Humanos , Tabaco sin Humo/efectos adversos , Neoplasias de la Boca/etiología , Uso de Tabaco/efectos adversos , Uso de Tabaco/epidemiología , Consumo de Bebidas Alcohólicas , Incidencia
6.
Indian J Med Res ; 157(6): 509-518, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-37322634

RESUMEN

Background & objectives: Vaccination and natural infection can both augment the immune responses against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), but how omicron infection has affected the vaccine-induced and hybrid immunity is not well studied in Indian population. The present study was aimed to assess the durability and change in responses of humoral immunity with age, prior natural infection, vaccine type and duration with a minimum gap of six months post-two doses with either ChAdOx1 nCov-19 or BBV152 prior- and post-emergence of the omicron variant. Methods: A total of 1300 participants were included in this observational study between November 2021 and May 2022. Participants had completed at least six months after vaccination (2 doses) with either ChAdOx1 nCoV-19 or an inactivated whole virus vaccine BBV152. They were grouped according to their age (≤ or ≥60 yr) and prior exposure of SARS-CoV-2 infection. Five hundred and sixteen of these participants were followed up after emergence of the Omicron variant. The main outcome was durability and augmentation of the humoral immune response as determined by anti-receptor-binding domain (RBD) immunoglobulin G (IgG) concentrations, anti-nucleocapsid antibodies and anti-omicron RBD antibodies. Live virus neutralization assay was conducted for neutralizing antibodies against four variants - ancestral, delta and omicron and omicron sublineage BA.5. Results: Before the omicron surge, serum anti-RBD IgG antibodies were detected in 87 per cent participants after a median gap of eight months from the second vaccine dose, with a median titre of 114 [interquartile range (IQR) 32, 302] BAU/ml. The levels increased to 594 (252, 1230) BAU/ml post-omicron surge (P<0.001) with 97 per cent participants having detectable antibodies, although only 40 had symptomatic infection during the omicron surge irrespective of vaccine type and previous history of infection. Those with prior natural infection and vaccination had higher anti-RBD IgG titre at baseline, which increased further [352 (IQR 131, 869) to 816 (IQR 383, 2001) BAU/ml] (P<0.001). The antibody levels remained elevated after a mean time gap of 10 months, although there was a decline of 41 per cent. The geometric mean titre was 452.54, 172.80, 83.1 and 76.99 against the ancestral, delta, omicron and omicron BA.5 variants in the live virus neutralization assay. Interpretation & conclusions: Anti-RBD IgG antibodies were detected in 85 per cent of participants after a median gap of eight months following the second vaccine dose. Omicron infection probably resulted in a substantial proportion of asymptomatic infection in the first four months in our study population and boosted the vaccine-induced humoral immune response, which declined but still remained durable over 10 months.


Asunto(s)
COVID-19 , Humanos , Lactante , COVID-19/prevención & control , Inmunidad Humoral , SARS-CoV-2 , ChAdOx1 nCoV-19 , Vacunación , Anticuerpos Neutralizantes , Inmunoglobulina G , Anticuerpos Antivirales
7.
Chemistry ; 28(14): e202104545, 2022 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-35060647

RESUMEN

This work describes a mild and robust double hydroarylation strategy for the synthesis of symmetrical /unsymmetrical diaryl- and triarylmethanes in excellent yields using Lambert salt (0.2-1.0 mol%). Despite the anticipated challenges associated with controlling selective product formation, unsymmetrical diaryl- and triarylmethanes products are obtained unprecedentedly. A highly efficient gram scale reaction has also been reported (TON for symmetrical product=475 and for unsymmetrical product=390). The synthetic utility of the methodology is demonstrated by the preparation of several unexplored diaryl- and triarylmethane-based biologically relevant molecules, such as arundine, vibrindole A, turbomycin B, and certain anti-inflammatory agents. A total synthesis of an anti-breast-cancer agent is also demonstrated. Control experiments, Hammett analysis, HRMS and GC-MS studies reveal the reaction intermediates and reaction mechanism.


Asunto(s)
Neoplasias , Elementos de Transición , Aldehídos , Catálisis , Ácidos de Lewis
8.
Appl Microbiol Biotechnol ; 106(17): 5643-5657, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-35913514

RESUMEN

Smokeless tobacco (SLT) alters the oral microbiome of smokeless tobacco users. Dysbiosis of oral bacteriome has been determined; however, the mycobiome of SLT users has not been characterized. The oral mycobiome was assayed by amplification and sequencing of the fungal internal transcribed spacer (ITS1) region from oral swab samples of non-SLT users, SLT users (with or without oral lesions), and SLT with alcohol users. We observed that the richness and diversity of oral mycobiome were significantly decreased in SLT with oral lesions users than in non-users. The ß-diversity analysis showed significant dissimilarity of oral mycobiome between non-users and SLT with oral lesions users. Linear discriminant analysis effect size and random forest analysis of oral mycobiome affirm that the genus Pichia was typical for SLT with oral lesions users. Prevalence of the fungal genus Pichia correlates positively with Starmerella, Mortierella, Fusarium, Calonectria, and Madurella, but is negatively correlated with Pyrenochaeta, Botryosporium, and Alternaria. Further, the determination of oral mycobiome functionality showed a high abundance of pathotroph-saprotroph-symbiotroph and animal pathogen-endophyte-epiphyte-undefined saprotroph at trophic and guild levels, respectively, indicating possibly major changes in normal growth repression of types of fungi. The oral mycobiome in SLT users was identified and comprehensively analyzed for the first time. SLT intake is associated with oral mycobiome dysbiosis and such alterations of the oral mycobiome may contribute to oral carcinogenesis in SLT users. This study will provide a basis for further large-scale investigations on the potential role of the mycobiome in SLT-induced oral cancer. KEY POINTS: • SLT induces dysbiosis of the oral microbiome that can contribute to oral cancer. • Oral mycobiome diversity is noticeably reduced in SLT users having oral lesions. • Occurrence of Pichia can be used as a biomarker for SLT users having oral lesions.


Asunto(s)
Neoplasias de la Boca , Micobioma , Tabaco sin Humo , Disbiosis , Humanos , Proyectos Piloto , Uso de Tabaco
9.
Sensors (Basel) ; 22(20)2022 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-36298396

RESUMEN

This work presents a study on users' attention detection with reference to a relaxed inattentive state using an over-the-clothes radio-frequency (RF) sensor. This sensor couples strongly to the internal heart, lung, and diaphragm motion based on the RF near-field coherent sensing principle, without requiring a tension chest belt or skin-contact electrocardiogram. We use cardiac and respiratory features to distinguish attention-engaging vigilance tasks from a relaxed, inattentive baseline state. We demonstrate high-quality vitals from the RF sensor compared to the reference electrocardiogram and respiratory tension belts, as well as similar performance for attention detection, while improving user comfort. Furthermore, we observed a higher vigilance-attention detection accuracy using respiratory features rather than heartbeat features. A high influence of the user's baseline emotional and arousal levels on the learning model was noted; thus, individual models with personalized prediction were designed for the 20 participants, leading to an average accuracy of 83.2% over unseen test data with a high sensitivity and specificity of 85.0% and 79.8%, respectively.


Asunto(s)
Ondas de Radio , Frecuencia Respiratoria , Humanos , Frecuencia Cardíaca
10.
Malar J ; 20(1): 295, 2021 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-34193175

RESUMEN

BACKGROUND: Plasmodium species are entirely dependent upon their host as a source of essential iron. Although it is an indispensable micronutrient, oxidation of excess ferrous iron to the ferric state in the cell cytoplasm can produce reactive oxygen species that are cytotoxic. The malaria parasite must therefore carefully regulate the processes involved in iron acquisition and storage. A 273 amino acid membrane transporter that is a member of the vacuolar iron transporter (VIT) family and an orthologue of the yeast Ca2+-sensitive cross complementer (CCC1) protein plays a major role in cytosolic iron detoxification of Plasmodium species and functions in transport of ferrous iron ions into the endoplasmic reticulum for storage. While this transporter, termed PfVIT, is not critical for viability of the parasite evidence from studies of mice infected with VIT-deficient Plasmodium suggests it could still provide an efficient target for chemoprophylactic treatment of malaria. Individual amino acid residues that constitute the Fe2+ binding site of the protein were identified to better understand the structural basis of substrate recognition and binding by PfVIT. METHODS: Using the crystal structure of a recently published plant VIT as a template, a high-quality homology model of PfVIT was constructed to identify the amino acid composition of the transporter's substrate binding site and to act as a guide for subsequent mutagenesis studies. To test the effect of mutation of the substrate binding-site residues on PfVIT function a yeast complementation assay assessed the ability of overexpressed, recombinant wild type and mutant PfVIT to rescue an iron-sensitive deletion strain (ccc1∆) of Saccharomyces cerevisiae yeast from the toxic effects of a high concentration of extracellular iron. RESULTS: The combined in silico and mutagenesis approach identified a methionine residue located within the cytoplasmic metal binding domain of the transporter as essential for PfVIT function and provided insight into the structural basis for the Fe2+-selectivity of the protein. CONCLUSION: The structural model of the metal binding site of PfVIT opens the door for rational design of therapeutics to interfere with iron homeostasis within the malaria parasite.


Asunto(s)
Proteínas de Transporte de Catión/genética , Plasmodium falciparum/genética , Proteínas Protozoarias/genética , Sitios de Unión , Transporte Biológico , Proteínas de Transporte de Catión/metabolismo , Hierro/metabolismo , Plasmodium falciparum/metabolismo , Proteínas Protozoarias/metabolismo , Alineación de Secuencia , Análisis de Secuencia de Proteína
11.
IEEE Sens J ; 21(4): 5303-5311, 2021 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-33746625

RESUMEN

Non-invasive respiration sensors integrated into furniture can be invisible to the user and greatly enhance comfort and convenience to facilitate many applications. Current sensors often require user cooperation or fitting, which discourages frequent usage. We present a new respiration sensor integrated into a bed or a chair by modifying a radio-frequency (RF) coaxial cable structure with a designed notch. The lung motion is coupled to the electromagnetic leakage at the notch through near-field coherent sensing (NCS). The sensors, covered with fabrics and positioned under the abdomen and thorax, can capture the respiratory waveforms and derive the breath rate. The heart rate can also be evaluated in the same setup with proper filtering. The sensor design can tolerate large position variation to accommodate user uncertainties. Various voluntary exercises of normal, deep, fast, held and blocked breathing were measured under different postures of supine, recumbent and sitting by the carrier frequency range between 900MHz and 2.4GHz. The breath rate from 10 participants compare well with the synchronous commercial chest-belt sensors in all breathing routines.

12.
J Gastroenterol Hepatol ; 34(1): 74-83, 2019 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-30069926

RESUMEN

BACKGROUND AND AIM: While the prevalence of celiac disease (CD) is increasing globally, the prevalence of tropical sprue (TS) is declining. Still, there are certain regions in the world where both patients with CD and TS exist and differentiation between them is a challenging task. We conducted a systematic review of the literature to find out differentiating clinical, endoscopic, and histological characteristics between CD and TS. METHODS: Medline, PubMed, and EMBASE databases were searched for keywords: celiac disease, coeliac, celiac, tropical sprue, sprue, clinical presentation, endoscopy, and histology. Studies published between August 1960 and January 2018 were reviewed. Out of 1063 articles available, 12 articles were included in the final analysis. RESULTS: Between the patients with CD and TS, there was no difference in the prevalence and duration of chronic diarrhea, abdominal distension, weight loss, extent of abnormal fecal fat content, and density of intestinal inflammation. The following features were more common in CD: short stature, vomiting/dyspepsia, endoscopic scalloping/attenuation of duodenal folds, histological high modified Marsh changes, crescendo type of IELosis, surface epithelial denudation, surface mucosal flattening, thickening of subepithelial basement membrane and celiac seropositivity; while those in TS include anemia, abnormal urinary D-xylose test, endoscopic either normal duodenal folds or mild attenuation, histologically decrescendo type of IELosis, low modified Marsh changes, patchy mucosal changes, and mucosal eosinophilia. CONCLUSIONS: Both patients with CD and TS have overlapping clinical, endoscopic, and histological characteristics, and there is no single diagnostic feature for differentiating CD from TS except for celiac specific serological tests.


Asunto(s)
Enfermedad Celíaca/diagnóstico por imagen , Enfermedad Celíaca/patología , Esprue Tropical/diagnóstico por imagen , Esprue Tropical/patología , Anemia/etiología , Autoanticuerpos/sangre , Estatura , Enfermedad Celíaca/complicaciones , Diagnóstico Diferencial , Dispepsia/etiología , Endoscopía Gastrointestinal , Humanos , Mucosa Intestinal/diagnóstico por imagen , Mucosa Intestinal/patología , Esprue Tropical/complicaciones , Vómitos/etiología , Xilosa/orina
13.
J Child Adolesc Ment Health ; 31(3): 182-188, 2019 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-31805841

RESUMEN

Objective: Cyclic vomiting syndrome (CVS) is difficult to diagnose, thus there is often a delay in diagnosis or a misdiagnosis. In the absence of an adequate understanding of the pathophysiology of the syndrome, it is under-recognised and treatment is difficult. The present case series aimed to assess and manage three adolescents with CVS.Method: The Children's Apperception Test was administered on the three Asian adolescents who were referred for the management of CVS to the Department of Clinical Psychology at a tertiary care hospital in New Delhi, India. A treatment module was developed to treat CVS in these adolescents.Results: A strong link was found between the psychological stressors and their physical manifestations in the episodes of vomiting. Therapeutic management with a focus on behavioural modification, adaptive coping skills, and a healthy therapeutic relationship was found to be efficacious in gradually remitting this condition.Conclusions: Thus, the focus of treatment in cases of CVS should be to understand the psychological underpinning and help the adolescents to incorporate healthy coping strategies.


Asunto(s)
Vómitos/terapia , Adolescente , Niño , Femenino , Humanos , Masculino , Escalas de Valoración Psiquiátrica , Psicoterapia/métodos , Estrés Psicológico/complicaciones , Estrés Psicológico/psicología , Vómitos/diagnóstico , Vómitos/psicología
14.
Indian J Med Res ; 147(3): 278-286, 2018 03.
Artículo en Inglés | MEDLINE | ID: mdl-29923517

RESUMEN

Background & objectives: Despite high occurrence of tuberculosis in India very little information is available about the genetic diversity of Mycobacterium tuberculosis isolates prevailing in coastal Karnataka, India. Thus, the present study was undertaken to explore the genetic biodiversity of M. tuberculosis isolates prevailing in south coastal region of Karnataka (Udupi District), India. Methods: A total of 111 Mycobacterial isolates were cultured in Lowenstein Jensen (LJ) medium and after obtaining growth, DNA was extracted and spoligotyping was performed. SITVIT WEB database was used to locate families of spoligotypes. Results: On analyzing the hybridization results of all 111 isolates on SITVIT WEB database 57 (51.35%) isolates were clustered into 11 Spoligotype International Types (SIT). The largest cluster of 14 (12.61%) isolates was SIT-48 (EAI1-SOM), followed by SIT-1942 (CAS1-Delhi) with 11 isolates (9.9%) and SIT-11 with seven (6.30%). Moreover, 23 isolates (20.72%) had unique spoligotypes and 31 (27.92%) were orphans. Spotclust analysis revealed that majority (67%) of orphan isolates were variants of CAS (37%) and EAI-5 (34%). Interpretation & conclusions: The present study revealed high biodiversity among the circulating isolates of M. tuberculosis in this region with the presence of mixed genotypes earlier reported from north and south India along with certain new genotypes with unique SITs. The study highlights the need for further longitudinal studies to explore the genetic diversity and to understand the transmission dynamics of prevailing isolates.


Asunto(s)
Variación Genética , Mycobacterium tuberculosis/genética , Tuberculosis/microbiología , Técnicas de Tipificación Bacteriana , Estudios Transversales , Genotipo , Humanos , India , Filogenia , Tuberculosis Pulmonar
15.
Indian J Med Res ; 143(4): 481-6, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-27377505

RESUMEN

BACKGROUND & OBJECTIVES: There is a paucity of data available on genetic biodiversity of Mycobacterium tuberculosis isolates from central India. The present study was carried out on isolates of M. tuberculosis cultured from diagnostic clinical samples of patients from Bhopal, central India, using spoligotyping as a method of molecular typing. METHODS: DNA was extracted from 340 isolates of M. tuberculosis from culture, confirmed as M. tuberculosis by molecular and biochemical methods and subjected to spoligotyping. The results were compared with the international SITVIT2 database. RESULTS: Sixty five different spoligo international type (SIT) patterns were observed. A total of 239 (70.3%) isolates could be clustered into 25 SITs. The Central Asian (CAS) and East African Indian (EAI) families were found to be the two major circulating families in this region. SIT26/CAS1_DEL was identified as the most predominant type, followed by SIT11/EAI3_IND and SIT288/CAS[2]. Forty (11.8%) unique (non-clustered) and 61 (17.9%) orphan isolates were identified in the study. There was no significant association of clustering with clinical and demographic characteristics of patients. INTERPRETATION & CONCLUSIONS: Well established SITs were found to be predominant in our study. SIT26/CAS1_DEL was the most predominant type. However, the occurrence of a substantial number of orphan isolates may indicate the presence of active spatial and temporal evolutionary dynamics within the isolates of M. tuberculosis.


Asunto(s)
Variación Genética , Mycobacterium tuberculosis/genética , Tuberculosis/microbiología , Adolescente , Técnicas de Tipificación Bacteriana , Niño , Femenino , Genotipo , Humanos , India , Masculino , Persona de Mediana Edad , Repeticiones de Minisatélite/genética , Mycobacterium tuberculosis/clasificación , Mycobacterium tuberculosis/patogenicidad , Tuberculosis/genética , Adulto Joven
16.
Indian J Exp Biol ; 54(4): 229-36, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-27295919

RESUMEN

Rapid and correct diagnosis is crucial for the management of multidrug resistance (MDR) in Mycobacterium tuberculosis (MTB). The present study aims at rapid diagnosis for identification of multidrug resistance tuberculosis (MDR-TB) using real-time PCR. FRET hybridization probes targeting most prominent four selected codons for rpoB526 and 531 and for katG314 and 315 genes were designed and evaluated on 143 clinical MTB isolates and paired sputa for rapid detection of MDR-TB. The results of real-time PCR were compared with gold standard L-J proportion method and further validated by DNA sequencing. Of the 143 MTB positive cultures, 85 and 58 isolates were found to be 'MDR' and 'pan susceptible', respectively by proportion L-J method. The sensitivity of real-time PCR for the detection of rifampicin (RIF) and isoniazid (INH) were 85.88 and 94.11%, respectively, and the specificity of method was found to be 98.27%. DNA sequencing of 31 MTB isolates having distinct melting temperature (Tm) as compared to the standard drug susceptible H37Rv strain showed 100% concordance with real-time PCR results. DNA sequencing revealed the mutations at Ser531Leu, His526Asp of rpoB gene and Ser315Thr, Thr314Pro of katG gene in RIF and INH resistance cases. This real-time PCR assay that targets limited number of loci in a selected range ensures direct and rapid detection of MDR-TB in Indian settings. However, future studies for revalidation as well as refinement are required to break the limitations of MDR-TB detection.


Asunto(s)
Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Tuberculosis Resistente a Múltiples Medicamentos/diagnóstico , Antituberculosos/farmacología , ADN Bacteriano/genética , Transferencia Resonante de Energía de Fluorescencia , Humanos , Isoniazida/farmacología , Pruebas de Sensibilidad Microbiana , Mycobacterium tuberculosis/efectos de los fármacos , Mycobacterium tuberculosis/genética , Mycobacterium tuberculosis/aislamiento & purificación , Rifampin/farmacología , Sensibilidad y Especificidad
17.
Ultrastruct Pathol ; 39(1): 38-48, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25192360

RESUMEN

The aim of this study was to investigate the morphologic and ultrastructural features of biofilms of slow and fast-growing mycobacteria in different stress conditions, presence and absence of oleic acid albumin dextrose catalase (OADC) enrichment and at different temperatures: 30, 37 and 42 °C. Four hundred mycobacterial isolates were taken. The biomass of each biofilm was quantified using a modified microtiter plate assay method. Isolates were divided into those that formed fully established biofilms, moderately attached biofilms and weakly adherent biofilms by comparison with a known biofilm-forming strain. The large quantity of biofilm was produced by Mycobacterium smegmatis at temperature 37 and 42 °C as compared to 30 °C. Mycobacterium fortuitum and M. avium developed large amount of biofilm at 30 °C as compared to 37 and 42 °C. Mycobacterium tuberculosis developed strong biofilm at 37 °C and no biofilm at 30 and 42 °C in Sauton's media. The selected non-tuberculous mycobacteria and H37Rv developed strong biofilm in the presence of OADC enrichment in Sauton's medium. Microscopic examination of biofilms by scanning electron microscopy revealed that poorly adherent biofilm formers failed to colonize the entire surface of the microtiter well. While moderately adherent biofilm formers grew in uniform monolayers but failed to develop a mature three-dimensional structure. SEM analysis of an isolate representative of the group formed fully established biofilms with a textured, multi-layered, three-dimensional structure.


Asunto(s)
Biopelículas/crecimiento & desarrollo , Micobacterias no Tuberculosas/fisiología , Micobacterias no Tuberculosas/ultraestructura , Microscopía Electrónica de Rastreo , Reacción en Cadena de la Polimerasa , Polimorfismo de Longitud del Fragmento de Restricción
18.
Natl Med J India ; 28(4): 188-9, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-27132727

RESUMEN

Irritable bowel syndrome is a common gastrointestinal condition with underlying psychological factors. Its management can be challenging, sometimes necessitating a multidisciplinary team of gastroenterologists, psychiatrists and clinical psychologists. Non-pharmacological interventions are gaining attention for the management of chronic irritable bowel syndrome. We present a difficult-to-treat case of chronic irritable bowel syndrome, which was managed successfully with psychological interventions.


Asunto(s)
Trastornos de Ansiedad , Terapia Cognitivo-Conductual/métodos , Síndrome del Colon Irritable , Sertralina/administración & dosificación , Trastornos de Ansiedad/diagnóstico , Trastornos de Ansiedad/etiología , Trastornos de Ansiedad/fisiopatología , Trastornos de Ansiedad/terapia , Conducta Compulsiva/terapia , Humanos , Síndrome del Colon Irritable/complicaciones , Síndrome del Colon Irritable/psicología , Síndrome del Colon Irritable/terapia , Masculino , Escala del Estado Mental , Persona de Mediana Edad , Inhibidores Selectivos de la Recaptación de Serotonina/administración & dosificación , Resultado del Tratamiento
19.
J Biol Chem ; 288(23): 16321-16333, 2013 Jun 07.
Artículo en Inglés | MEDLINE | ID: mdl-23629656

RESUMEN

Secretory phospholipase A2 group IIa (PLA2g2a) is associated with inflammation, hyperlipidemia, and atherogenesis. Transcription of the PLA2g2a gene is induced by multiple cytokines. Here, we report the surprising observation that thyroid hormone (T3) inhibited PLA2g2a gene expression in human and rat hepatocytes as well as in rat liver. Moreover, T3 reduced the cytokine-mediated induction of PLA2g2a, suggesting that the thyroid status may modulate aspects of the inflammatory response. In an effort to dissect the mechanism of repression by T3, we cloned the PLA2g2a gene and identified a negative T3 response element in the promoter. This T3 receptor (TRß)-binding site differed considerably from consensus T3 stimulatory elements. Using in vitro and in vivo binding assays, we found that TRß bound directly to the PLA2g2a promoter as a heterodimer with the retinoid X receptor. Knockdown of nuclear corepressor or silencing mediator for retinoid and thyroid receptors by siRNA blocked the T3 inhibition of PLA2g2a. Using chromatin immunoprecipitation assays, we showed that nuclear corepressor and silencing mediator for retinoid and thyroid receptors were associated with the PLA2g2a gene in the presence of T3. In contrast with the established role of T3 to promote coactivator association with TRß, our experiments demonstrate a novel inverse recruitment mechanism in which liganded TRß recruits corepressors to inhibit PLA2g2a expression.


Asunto(s)
Regulación Enzimológica de la Expresión Génica/fisiología , Fosfolipasas A2 Grupo II/biosíntesis , Hepatocitos/metabolismo , Proteínas Represoras/metabolismo , Elementos de Respuesta/fisiología , Receptores beta de Hormona Tiroidea/metabolismo , Transcripción Genética/fisiología , Triyodotironina/metabolismo , Animales , Fosfolipasas A2 Grupo II/genética , Células Hep G2 , Hepatocitos/citología , Humanos , Hígado/citología , Hígado/metabolismo , Masculino , Ratas , Ratas Sprague-Dawley , Proteínas Represoras/genética , Receptores X Retinoide/genética , Receptores X Retinoide/metabolismo , Receptores beta de Hormona Tiroidea/genética , Triyodotironina/genética
20.
J Biol Chem ; 288(2): 807-18, 2013 Jan 11.
Artículo en Inglés | MEDLINE | ID: mdl-23209300

RESUMEN

Sirtuin 1 (SIRT1) is a nuclear deacetylase that modulates lipid metabolism and enhances mitochondrial activity. SIRT1 targets multiple transcription factors and coactivators. Thyroid hormone (T(3)) stimulates the expression of hepatic genes involved in mitochondrial fatty acid oxidation and gluconeogenesis. We reported that T(3) induces genes for carnitine palmitoyltransferase (cpt1a), pyruvate dehydrogenase kinase 4 (pdk4), and phosphoenolpyruvate carboxykinase (pepck). SIRT1 increases the expression of these genes via the activation of several factors, including peroxisome proliferator-activated receptor α, estrogen-related receptor α, and peroxisome proliferator-activated receptor γ coactivator (PGC-1α). Previously, we reported that PGC-1α participates in the T(3) induction of cpt1a and pdk4 in the liver. Given the overlapping targets of T(3) and SIRT1, we investigated whether SIRT1 participated in the T(3) regulation of these genes. Resveratrol is a small phenolic compound whose actions include the activation of SIRT1. Addition of resveratrol increased the T(3) induction of the pdk4 and cpt1a genes in hepatocytes. Furthermore, expression of SIRT1 in hepatocytes mimicked resveratrol in the regulation of gene expression by T(3). The deacetylase activity of SIRT1 was required and PGC-1α was deacetylated following addition of T(3). We found that SIRT1 interacted directly with T(3) receptor (TRß). Knockdown of SIRT1 decreased the T(3) induction of cpt1a and pdk4 and reduced the T(3) inhibition of sterol response element binding protein (srebp-1c) both in isolated hepatocytes and in rat liver. Our results indicate that SIRT1 contributes to the T(3) regulation of hepatic genes.


Asunto(s)
Regulación de la Expresión Génica/fisiología , Hígado/metabolismo , Sirtuina 1/fisiología , Triyodotironina/fisiología , Secuencia de Bases , Línea Celular , Cartilla de ADN , Regulación de la Expresión Génica/efectos de los fármacos , Técnicas de Silenciamiento del Gen , Humanos , Reacción en Cadena en Tiempo Real de la Polimerasa , Resveratrol , Sirtuina 1/genética , Estilbenos/farmacología
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