Diving into broad-scale and high-resolution population genomics to decipher drivers of structure and climatic vulnerability in a marine invertebrate.

Species with widespread distributions play a crucial role in our understanding of climate change impacts on population structure. In marine species, population structure is often governed by both high connectivity potential and selection across strong environmental gradients. Despite the complexity of factors influencing marine populations, studying species with broad distribution can provide valuable insights into the relative importance of these factors and the consequences of climate-induced alterations across environmental gradients. We used the northern shrimp Pandalus borealis and its wide latitudinal distribution to identify current drivers of population structure and predict the species' vulnerability to climate change. A total of 1514 individuals sampled across 24° latitude were genotyped at high geographic (54 stations) and genetic (14,331 SNPs) resolutions to assess genetic variation and environmental correlations. Four populations were identified in addition to finer substructure associated with local adaptation. Geographic patterns of neutral population structure reflected predominant oceanographic currents, while a significant proportion of the genetic variation was associated with gradients in salinity and temperature. Adaptive landscapes generated using climate projections suggest a larger genomic offset in the southern extent of the P. borealis range, where shrimp had the largest adaptive standing genetic variation. Our genomic results combined with recent observations point to further deterioration in southern regions and an impending vulnerable status in the regions at higher latitudes for P. borealis. They also provide rare insights into the drivers of population structure and climatic vulnerability of a widespread meroplanktonic species, which is crucial to understanding future challenges associated with invertebrates essential to ecosystem functioning.

Spatiotemporal variability in diet composition of Greenland halibut (Reinhardtius hippoglossoides) from the eastern Canadian Arctic.

Greenland halibut (Reinhardtius hippoglossoides) sustain one of the most lucrative fisheries in the eastern Canadian Arctic and Labrador Sea. This species also plays an important role in food web connectivity and benthic-pelagic coupling. Despite the relatively rich knowledge of this species, R. hippoglossoides ecology in these specific areas remains poorly understood. The main aim of this study was to characterize the diet of this deepwater fish in the Labrador Sea and Davis and Hudson Straits and characterize the predator-prey relationship with northern shrimp (Pandalus borealis), another commercially important species in the region. Stomach contents analyses were conducted on 1199 fish captured from 2018 to 2020. Small specimens (<20 cm) fed on invertebrates, whereas larger individuals (>60 cm) fed primarily on fish, indicative of size-related changes in diet composition. The relative abundance of Pandalus shrimp species in the environment was reflected in the diet. Location appeared to be the most influential variable on feeding patterns. Distinct oceanographic conditions among areas, resulting in differences in prey availability, could explain these results. Arctic cod (Boreogadus saida) and redfish (Sebastes sp.) were selected in locations where fish prey were the most abundant. These results shed light on the opportunistic nature of R. hippoglossoides and its preference for fish at large size. With the rapidly changing oceanographic conditions of Arctic waters, a distributional change in the biomass of shrimp is expected. Results suggest that an increase in abundance of predatory groundfish species in the system (e.g., Sebastes sp.) could lead to acute predation on shrimp and competition with R. hippoglossoides. By revealing key trophic links within the demersal ecosystem, this work provides valuable information on the development of ecosystem approaches to fisheries management for the region.

Mercury biomagnification in marine zooplankton food webs in Hudson Bay.

While much research has been carried out on mercury in large marine mammals and associated food webs in northern regions, comparatively less has been conducted on lower trophic levels including zooplankton and the subsequent transfer to predators, which marks the entry of mercury into northern marine food webs. We present here the first database for mercury uptake and transfer exclusively within zooplankton food webs in northern marine waters. We have investigated both total (THg) and monomethylmercury (MMHg) concentrations, and isotopic signatures (δ(15)N and δ(13)C) in individual zooplankton taxa collected over a period of eight years (2003-2010) from across Hudson Bay (including Hudson Strait and Foxe Basin) as part of research icebreaker cruises. δ(15)N values ranged from 3.4 to 14.0‰, implying trophic levels ranging from 1 to 4, and THg concentrations ranged from 5 to 242 ng g(-1) dw. Food web linkages were identified within the data set, and mercury biomagnification was evident both with THg and MMHg concentrations increasing from prey to predator, and with trophic magnification factors (TMFs). Total mercury and MMHg transfer in a unique prey-predator linkage (Limacina helicina-Clione limacina) are investigated and discussed with regard to known physiological and biochemical characteristics. The results suggest that exposure to mercury at higher trophic levels including humans can be affected by processes at the bottom of Arctic marine food webs.

Chromosome-level assembly reveals a putative Y-autosomal fusion in the sex determination system of the Greenland Halibut (Reinhardtius hippoglossoides).

Despite the commercial importance of Greenland Halibut (Reinhardtius hippoglossoides), important gaps still persist in our knowledge of this species, including its reproductive biology and sex determination mechanism. Here, we combined single-molecule sequencing of long reads (Pacific Sciences) with chromatin conformation capture sequencing (Hi-C) data to assemble the first chromosome-level reference genome for this species. The high-quality assembly encompassed more than 598 Megabases (Mb) assigned to 1594 scaffolds (scaffold N50 = 25 Mb) with 96% of its total length distributed among 24 chromosomes. Investigation of the syntenic relationship with other economically important flatfish species revealed a high conservation of synteny blocks among members of this phylogenetic clade. Sex determination analysis revealed that similar to other teleost fishes, flatfishes also exhibit a high level of plasticity and turnover in sex determination mechanisms. A low-coverage whole-genome sequence analysis of 198 individuals revealed that Greenland Halibut possesses a male heterogametic XY system and several putative candidate genes implied in the sex determination of this species. Our study also suggests for the first time in flatfishes that a putative Y-autosomal fusion could be associated with a reduction of recombination typical of the early steps of sex chromosome evolution.

Life History of the Arctic Squid Gonatus fabricii (Cephalopoda: Oegopsida) Reconstructed by Analysis of Individual Ontogenetic Stable Isotopic Trajectories.

Cephalopods are important in Arctic marine ecosystems as predators and prey, but knowledge of their life cycles is poor. Consequently, they are under-represented in the Arctic ecosystems assessment models. One important parameter is the change in ecological role (habitat and diet) associated with individual ontogenies. Here, the life history of Gonatus fabricii, the most abundant Arctic cephalopod, is reconstructed by the analysis of individual ontogenetic trajectories of stable isotopes (δ13C and δ15N) in archival hard body structures. This approach allows the prediction of the exact mantle length (ML) and mass when the species changes its ecological role. Our results show that the life history of G. fabricii is divided into four stages, each having a distinct ecology: (1) epipelagic squid (ML < 20 mm), preying mostly on copepods; (2) epi- and occasionally mesopelagic squid (ML 20−50 mm), preying on larger crustaceans, fish, and cephalopods; (3) meso- and bathypelagic squid (ML > 50 mm), preying mainly on fish and cephalopods; and (4) non-feeding bathypelagic gelatinous females (ML > 200 mm). Existing Arctic ecosystem models do not reflect the different ecological roles of G. fabricii correctly, and the novel data provided here are a necessary baseline for Arctic ecosystem modelling and forecasting.

A meta-collection of nitrogen stable isotope data measured in Arctic marine organisms from the Canadian Beaufort Sea, 1983-2013.

OBJECTIVES: Existing information on Arctic marine food web structure is fragmented. Integrating data across research programs is an important strategy for building a baseline understanding of food web structure and function in many Arctic regions. Naturally-occurring stable isotope ratios of nitrogen (δ15N) and carbon (δ13C) measured directly in the tissues of organisms are a commonly-employed method for estimating food web structure. The objective of the current dataset was to synthesize disparate δ15N, and secondarily δ13C, data in the Canadian Beaufort continental shelf region relevant to trophic and ecological studies at the local and pan-Arctic scales. DATA DESCRIPTION: The dataset presented here contains nitrogen and carbon stable isotope ratios (δ15N, δ13C) measured in marine organisms from the Canadian Beaufort continental shelf region between 1983 and 2013, gathered from 27 published and unpublished sources with associated sampling metadata. A total of 1077 entries were collected, summarizing 8859 individual organisms/samples representing 333 taxa across the Arctic food web, from top marine mammal predators to primary producers.

Arctic climate change and pollution impact little auk foraging and fitness across a decade.

Ongoing global changes apply drastic environmental forcing onto Arctic marine ecosystems, particularly through ocean warming, sea-ice shrinkage and enhanced pollution. To test impacts on arctic marine ecological functioning, we used a 12-year integrative study of little auks (Alle alle), the most abundant seabird in the Atlantic Arctic. We monitored the foraging ecology, reproduction, survival and body condition of breeding birds, and we tested linkages between these biological variables and a set of environmental parameters including sea-ice concentration (SIC) and mercury contamination. Little auks showed substantial plasticity in response to SIC, with deeper and longer dives but less time spent underwater and more time flying when SIC decreased. Their diet also contained less lipid-rich ice-associated prey when SIC decreased. Further, in contrast to former studies conducted at the annual scale, little auk fitness proxies were impacted by environmental changes: Adult body condition and chick growth rate were negatively linked to SIC and mercury contamination. However, no trend was found for adult survival despite high inter-annual variability. Our results suggest that potential benefits of milder climatic conditions in East Greenland may be offset by increasing pollution in the Arctic. Overall, our study stresses the importance of long-term studies integrating ecology and ecotoxicology.

A new species of Monstrillopsis (Crustacea, Copepoda, Monstrilloida) from the lower Northwest Passage of the Canadian Arctic.

A new species of monstrilloid copepod, Monstrillopsis planifronssp. n., is described from an adult female that was collected beneath snow-covered sea ice during the 2014 Ice Covered Ecosystem - CAMbridge bay Process Study (ICE-CAMPS) in Dease Strait of the Canadian Arctic Archipelago. Currently, up to six species of this order are known to occur in polar latitudes. The new species described herein shares similarities with Monstrillopsis dubia (Scott, 1904) but differs in its body proportions and cephalothorax ornamentation; the cephalothorax is covered by minute scattered papillae on dorsal and ventral surfaces; this species has a reduced fifth leg endopod, fifth leg exopod armed with three setae, antennule with fused segments 3-4, and the genital double-somite bears unique posterolateral processes. This is the second species of this genus recorded in the Arctic, after Monstrillopsis ferrarii (Suárez-Morales & Ivanenko, 2004), described from the White Sea, and is the first record of Monstrillopsis in Canadian waters. With the addition of this new species and the recognition of Monstrillopsis bernardensis comb. nov. as a member of this genus, the number of nominal species is now 15. Overall, this genus has a tendency to be distributed in temperate and cold waters, while only three species have been found in tropical and subtropical latitudes.

Supplementary diet components of little auk chicks in two contrasting regions on the West Spitsbergen coast.

The complete diet composition structure of the most numerous planktivorous sea bird, little auk (Alle alle), in the European Arctic, is still not fully recognized. Although regular constituents of little auk chick diets, the copepods, Calanus glacialis and C. finmarchicus have been previously relatively well described, more taxa were frequent ingredients of the bird's meals. Therefore, the role of the little auks supplementary diet components (SDCs) at two colonies in the Svalbard Archipelago, Hornsund and Magdalenefjorden, in 2007-2009, is a main subject of this comparative study. Because the SDCs often consisted of scarce but large zooplankters, this investigation was focused on biomass as a proxy of the SDCs' energy input. Although the total biomass of the food delivered to chicks in both colonies was similar, in Magdalenefjorden, the proportion of SDCs was twice that found in Hornsund. The main SDCs in Hornsund were Decapoda larvae (with predominating Pagurus pubescens) and Thysanoessa inermis, whereas the main SDCs in Magdalenefjorden were C. hyperboreus and Apherusa glacialis. Previous investigations, which indicated lipid richness of SDCs, together with our ecological results from the colonies, suggest that this category might play a compensatory role in little auk chick diets. The ability to forage on diverse taxa may help the birds to adapt to ongoing Arctic ecosystem changes.