RESUMEN
Long noncoding RNAs (lncRNAs) are vastly transcribed and extensively studied but lncRNAs overlapping with the sense orientation of mRNA have been poorly studied. We analyzed the lncRNA DAPALR overlapping with the 5´ UTR of the Doublesex1 (Dsx1), the male determining gene in Daphnia magna. By affinity purification, we identified an RNA binding protein, Shep as a DAPALR binding protein. Shep also binds to Dsx1 5´ UTR by recognizing the overlapping sequence and suppresses translation of the mRNA. In vitro and in vivo analyses indicated that DAPALR increased Dsx1 translation efficiency by sequestration of Shep. This regulation was impaired when the Shep binding site in DAPALR was deleted. These results suggest that Shep suppresses the unintentional translation of Dsx1 by setting a threshold; and when the sense lncRNA DAPALR is expressed, DAPALR cancels the suppression caused by Shep. This mechanism may be important to show dimorphic gene expressions such as sex determination and it may account for the binary expression in various developmental processes.
Asunto(s)
Regulación de la Expresión Génica/genética , ARN Largo no Codificante/genética , Procesos de Determinación del Sexo/genética , Regiones no Traducidas 5'/genética , Animales , Sitios de Unión/genética , Proteínas de Unión al ADN/genética , Daphnia/genética , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Expresión Génica/genética , Regulación de la Expresión Génica/fisiología , Masculino , ARN Largo no Codificante/metabolismo , ARN Mensajero/genética , Proteínas de Unión al ARN/genética , Proteínas de Unión al ARN/metabolismoRESUMEN
Residual ridge resorption combined with dimensional loss resulting from tooth extraction has a prolonged correlation with early excessive inflammation. Nuclear factor-kappa B (NF-κB) decoy oligodeoxynucleotides (ODNs) are double-stranded DNA sequences capable of downregulating the expression of downstream genes of the NF-κB pathway, which is recognized for regulating prototypical proinflammatory signals, physiological bone metabolism, pathologic bone destruction, and bone regeneration. The aim of this study was to investigate the therapeutic effect of NF-κB decoy ODNs on the extraction sockets of Wistar/ST rats when delivered by poly(lactic-co-glycolic acid) (PLGA) nanospheres. Microcomputed tomography and trabecular bone analysis following treatment with NF-κB decoy ODN-loaded PLGA nanospheres (PLGA-NfDs) demonstrated inhibition of vertical alveolar bone loss with increased bone volume, smoother trabecular bone surface, thicker trabecular bone, larger trabecular number and separation, and fewer bone porosities. Histomorphometric and reverse transcription-quantitative polymerase chain reaction analysis revealed reduced tartrate-resistant acid phosphatase-expressing osteoclasts, interleukin-1ß, tumor necrosis factor-α, receptor activator of NF-κB ligand, turnover rate, and increased transforming growth factor-ß1 immunopositive reactions and relative gene expression. These data demonstrate that local NF-κB decoy ODN transfection via PLGA-NfD can be used to effectively suppress inflammation in a tooth-extraction socket during the healing process, with the potential to accelerate new bone formation.
Asunto(s)
Pérdida de Hueso Alveolar , FN-kappa B , Nanosferas , Copolímero de Ácido Poliláctico-Ácido Poliglicólico , Animales , Ratas , Pérdida de Hueso Alveolar/tratamiento farmacológico , Proceso Alveolar , Glicoles , Inflamación/metabolismo , Nanosferas/uso terapéutico , FN-kappa B/química , FN-kappa B/farmacología , Oligodesoxirribonucleótidos/farmacología , Copolímero de Ácido Poliláctico-Ácido Poliglicólico/química , Copolímero de Ácido Poliláctico-Ácido Poliglicólico/farmacología , Ratas Wistar , Microtomografía por Rayos XRESUMEN
Engineering G-protein-coupled receptors (GPCRs) for improved stability or altered function is of great interest, as GPCRs consist of the largest protein family, are involved in many important signaling pathways, and thus, are one of the major drug targets. Here, we report the development of a high-throughput screening method for GPCRs using a reconstituted in vitro transcription-translation (IVTT) system. Human endothelin receptor type-B (ETBR), a class A GPCR that binds endothelin-1 (ET-1), a 21-residue peptide hormone, was synthesized in the presence of nanodisc (ND) composed of a phospholipid, 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-(1'-rac-glycerol) (POPG). The ET-1 binding of ETBR was significantly reduced or was undetectable when other phospholipids were used for ND preparation. However, when functional ETBR purified from Sf9 cells was reconstituted into NDs, ET-1 binding was observed with two different phospholipids tested, including POPG. These results suggest that POPG likely supports the folding of ETBR into its functional form in the IVTT system. Using the same conditions as ETBR, whose three-dimensional structure has been solved, human endothelin receptor type-A (ETAR), whose three-dimensional structure remains unsolved, was also synthesized in its functional form. By adding POPG-ND to the IVTT system, both ETAR and ETBR were successfully subjected to ribosome display, a method of in vitro directed evolution that facilitates the screening of up to 1012 mutants. Finally, using a mock library, we showed that ribosome display can be applied for gene screening of ETBR, suggesting that high-throughput screening and directed evolution of GPCRs is possible in vitro.
Asunto(s)
Sistema Libre de Células , Endotelina-1 , Ingeniería de Proteínas , Receptor de Endotelina A , Humanos , Fosfolípidos , Ingeniería de Proteínas/métodos , Receptor de Endotelina A/biosíntesis , RibosomasRESUMEN
The ABC transporter, Scarlet, and its binding partner, White are involved in pigment synthesis in the insect eye and mutations in these genes are used as genetic markers. Recent studies have suggested that these transporters also have additional functions in the neuronal system. In our previous study, we generated scarlet mutant in the small crustacean, Daphnia magna and showed that the mutant lacked the eye pigment in the mutant. Here, we show that the scarlet mutant exhibits spinning behavior. This phenotype is partly associated with the presence of light. Metabolomic analysis of a juvenile mutant revealed that the scarlet mutant has approximately one-tenth of the histamine content of the wild type. Application of histamine to the scarlet mutant rescued the spinning behavior in juveniles, suggesting that the spinning behavior of the mutant is caused by the reduction of histamine. However, the altered behavior was not rescued in the adult mutant by the addition of histamine, suggesting that Scarlet plays an irreversible role in the development of histaminergic neurons. These results suggest that Scarlet plays an important role in histaminergic signaling, which might be related to control the spinning behavior, in addition to its role in eye pigmentation.
Asunto(s)
Transportadoras de Casetes de Unión a ATP/genética , Transportadoras de Casetes de Unión a ATP/metabolismo , Daphnia/fisiología , Histamina/metabolismo , Pigmentación/genética , Pigmentos Biológicos/metabolismo , Animales , Conducta Animal/fisiología , Proteínas del Ojo/genética , Proteínas del Ojo/metabolismo , Proteínas de Insectos/genética , Proteínas de Insectos/metabolismo , Luz , Mutación , FenotipoRESUMEN
DNA methylation plays an important role in many aspects of biology, including development, disease, and phenotypic plasticity. In the branchiopod crustacean, Daphnia, de novo DNA methylation has been detected in specific environmental contexts. However, fundamental information on de novo DNA methyltransferase DNMT3 orthologs, including domain organization, developmental expression, and response to environmental stimuli, is lacking. In this study, we examined two DNMT3 orthologs in Daphnia magna, DapmaDNMT3.1 and DapmaDNMT3.2. Amino acid sequence alignment revealed that DapmaDNMT3.1 and DapmaDNMT3.2 lack the conserved methyltransferase motifs of the catalytic domain and the PWWP domain, respectively. We profiled the expression of the two orthologs during embryogenesis and under various feeding levels. During embryogenesis, in contrast to the low DapmaDNMT3.1 expression, DapmaDNTM3.2 was highly expressed at specific stages, that is, in the one cell-stage and at 48 hr post ovulation. In nutrient-rich condition, both genes were lowly expressed, whereas DapmaDNMT3.1 was upregulated at the lower food levels, suggesting a potential role of DapmaDNMT3.1 in gene regulation in response to caloric restriction. These findings provide a basis for understanding the developmental stage- and stress-dependent function of DNMT3 orthologs in D. magna.
Asunto(s)
Restricción Calórica , ADN (Citosina-5-)-Metiltransferasas/metabolismo , Metilación de ADN , Daphnia/genética , Secuencia de Aminoácidos , Animales , Dominio Catalítico , ADN (Citosina-5-)-Metiltransferasas/genética , Daphnia/embriología , Métodos de Alimentación , Femenino , Regulación del Desarrollo de la Expresión Génica , Filogenia , Regulación hacia ArribaRESUMEN
Dragon fruit oligosaccharide (DFO) is an indigestible prebiotic. In this study, we aimed to investigate the effects of DFO on gut microbiota, oxidative stress and immune-related gene expression in Daphnia magna. The 10-day-old D. magna were treated with 0, 9, and 27 mg l-1 DFO for 85 h. The gut bacterial communities, superoxide dismutase (SOD) activity, lipid peroxidation and the expressions of genes in Toll signaling pathway were observed. The results showed that D. magna treated with 9 and 27 mg l-1 DFO altered gut microbiota composition by increasing Limnohabitans and Lactobacillus, and significantly increased SOD activity and reduced lipid peroxidation. Moreover, the expressions of Toll2, Toll3, Toll5, Toll7 and Pelle genes were significantly increased in D. magna treated with 9 and 27 mg l-1 DFO. Our results suggested that DFO changed the composition of the gut microbiota of D. magna by increasing the beneficial bacteria. DFO also had the ability to stimulate innate immunity in D. magna by increasing SOD activity, reducing lipid peroxidation, and increasing the expression of immune-related genes.
Asunto(s)
Proteínas de Artrópodos/genética , Cactaceae/química , Daphnia/inmunología , Microbioma Gastrointestinal/efectos de los fármacos , Expresión Génica/efectos de los fármacos , Oligosacáridos/metabolismo , Estrés Oxidativo/efectos de los fármacos , Alimentación Animal/análisis , Animales , Proteínas de Artrópodos/inmunología , Daphnia/metabolismo , Daphnia/microbiología , Dieta , Suplementos Dietéticos/análisis , Relación Dosis-Respuesta a Droga , Frutas/química , Oligosacáridos/administración & dosificación , Oligosacáridos/química , Distribución AleatoriaRESUMEN
Divergence of upstream regulatory pathways of the transcription factor Doublesex (Dsx) serves as a basis for evolution of sex-determining mechanisms in animals. However, little is known about the regulation of Dsx in environmental sex determination. In the crustacean Daphnia magna, environmental sex determination is implemented by male-specific expression of the Dsx ortholog, Dsx1. Transcriptional regulation of Dsx1 comprises at least three phases during embryogenesis: non-sex-specific initiation, male-specific up-regulation, and its maintenance. Herein, we demonstrate that the male-specific up-regulation is controlled by the bZIP transcription factor, Vrille (Vri), an ortholog of the circadian clock genes-Drosophila Vri and mammalian E4BP4/NFIL3. Sequence analysis of the Dsx1 promoter/enhancer revealed a conserved element among two Daphnia species (D. magna and D. pulex), which contains a potential enhancer harboring a consensus Vri binding site overlapped with a consensus Dsx binding site. Besides non-sex-specific expression of Vri in late embryos, we found male-specific expression in early gastrula before the Dsx1 up-regulation phase begins. Knockdown of Vri in male embryos showed reduction of Dsx1 expression. In addition, transient overexpression of Vri in early female embryos up-regulated the expression of Dsx1 and induced male-specific trait. Targeted mutagenesis using CRISPR/Cas9 disrupted the enhancer on genome in males, which led to the reduction of Dsx1 expression. These results indicate that Vri was co-opted as a transcriptional activator of Dsx1 in environmental sex determination of D. magna. The data suggests the remarkably plastic nature of gene regulatory network in sex determination.
Asunto(s)
Factores de Transcripción con Cremalleras de Leucina de Carácter Básico/metabolismo , Proteínas de Unión al ADN/metabolismo , Daphnia/genética , Procesos de Determinación del Sexo/genética , Animales , Factores de Transcripción con Cremalleras de Leucina de Carácter Básico/genética , Sistemas CRISPR-Cas , Clonación Molecular , Proteínas de Unión al ADN/genética , Daphnia/embriología , Elementos de Facilitación Genéticos , Femenino , Regulación del Desarrollo de la Expresión Génica , Redes Reguladoras de Genes , Sitios Genéticos , Técnicas de Genotipaje , Masculino , Regiones Promotoras Genéticas , Análisis de Secuencia de ADNRESUMEN
Polyphosphate kinaseâ 2 (PPK2) transfer phosphate from inorganic polyphosphate to nucleotides. According to their activity, PPK2 enzymes are classified into three groups. Among them, classâ III enzymes catalyze both the phosphorylation of nucleotide mono- to diphosphates and di- to triphosphates by using polyphosphate, which is a very inexpensive substrate. Therefore, classâ III enzymes are very attractive for use in biotechnological applications. Despite several studies on classâ III enzymes, a detailed mechanism of how phosphate is transferred from the polyphosphate to the nucleotide remains to be elucidated. Herein, it is reported that PPK2 classâ III enzymes from two different bacterial species catalyze the phosphorylation of adenosine mono- (AMP) into triphosphate (ATP) not only through step-by-step phosphorylation, but also by pyrophosphorylation. These are the first PPK2 enzymes that have been shown to possess polyphosphate-dependent pyrophosphorylation activity.
Asunto(s)
Adenosina Monofosfato/química , Difosfatos/química , Fosfotransferasas (Aceptor del Grupo Fosfato)/química , Adenosina Difosfato/química , Secuencia de Aminoácidos , Biocatálisis , Deinococcus/enzimología , Delftia/enzimología , Cinética , Fosfatos/química , Fosforilación , Especificidad por SustratoRESUMEN
Parasite-mediated selection varying across time and space in metapopulations is expected to result in host local adaptation and the maintenance of genetic diversity in disease-related traits. However, nonadaptive processes like migration and extinction-(re)colonization dynamics might interfere with adaptive evolution. Understanding how adaptive and nonadaptive processes interact to shape genetic variability in life-history and disease-related traits can provide important insights into their evolution in subdivided populations. Here we investigate signatures of spatially fluctuating, parasite-mediated selection in a natural metapopulation of Daphnia magna. Host genotypes from infected and uninfected populations were genotyped at microsatellite markers, and phenotyped for life-history and disease traits in common garden experiments. Combining phenotypic and genotypic data a QST -FST -like analysis was conducted to test for signatures of parasite mediated selection. We observed high variation within and among populations for phenotypic traits, but neither an indication of host local adaptation nor a cost of resistance. Infected populations have a higher gene diversity (Hs) than uninfected populations and Hs is strongly positively correlated with fitness. These results suggest a strong parasite effect on reducing population level inbreeding. We discuss how stochastic processes related to frequent extinction-(re)colonization dynamics as well as host and parasite migration impede the evolution of resistance in the infected populations. We suggest that the genetic and phenotypic patterns of variation are a product of dynamic changes in the host gene pool caused by the interaction of colonization bottlenecks, inbreeding, immigration, hybrid vigor, rare host genotype advantage and parasitism. Our study highlights the effect of the parasite in ameliorating the negative fitness consequences caused by the high drift load in this metapopulation.
Asunto(s)
Daphnia/genética , Parásitos/genética , Animales , Variación Genética , Genotipo , Vigor Híbrido/genética , Endogamia/métodos , Repeticiones de Microsatélite/genética , Dinámica PoblacionalRESUMEN
For the suppression of inflammation in the aneurysm development, we focused on inhibition of an important transcription factor, nuclear factor-kappa B (NF-κB), using a decoy strategy. We newly developed a novel bioabsorbable sheet that delivers NF-κB decoy oligodeoxynucleotide (ODN).We treated 5-week-old SD rats that were induced with abdominal aortic aneurysm (AAA) using 0.5 M CaCl2 with an NF-κB decoy sheet. Four weeks after AAA induction, aortic tissue was excised for further examinations. We showed that this bioabsorbable sheet could deliver the decoy ODN into the target tissues and dissolve within a week. Treatment with the NF-κB decoy sheet reduced the aneurysm size compared with the controls. It also suppressed inflammation due to the effect of NF-κB decoy ODN. Immunohistochemistry revealed that the expression of CD31, CD4, and CD11b in the NF-κB decoy sheet group was significantly lower than in the control sheet group. The NF-κB decoy sheet was absorbed on the target tissue.We have revealed that the bioabsorbable sheet mediated decoy ODN is effective for transfection into target organs. We have also indicated that NF-κB decoy ODN transfection using this sheet has the potential to suppress the dilatation of aneurysm. The bioabsorbable sheet mediated transfection of the decoy ODN can be beneficial for the clinical treatment of AAA and other NF-κB-related cardiovascular diseases.
Asunto(s)
Implantes Absorbibles/estadística & datos numéricos , Aorta/anatomía & histología , Aneurisma de la Aorta Abdominal/tratamiento farmacológico , FN-kappa B/metabolismo , Oligodesoxirribonucleótidos/metabolismo , Oligonucleótidos/metabolismo , Animales , Aorta/efectos de los fármacos , Aorta/patología , Aorta/ultraestructura , Aneurisma de la Aorta Abdominal/metabolismo , Aneurisma de la Aorta Abdominal/patología , Antígeno CD11b/metabolismo , Antígenos CD4/metabolismo , Regulación de la Expresión Génica , Inflamación/tratamiento farmacológico , Inflamación/metabolismo , Inflamación/patología , Masculino , FN-kappa B/efectos de los fármacos , Oligodesoxirribonucleótidos/farmacología , Molécula-1 de Adhesión Celular Endotelial de Plaqueta/metabolismo , Ratas , Ratas Sprague-Dawley , Transfección/métodosRESUMEN
The viral 2A peptides have recently been used for bicistronic expression in various organisms. In this system, a single mRNA that codes for two proteins flanking the 2A peptide can be translated simultaneously into each protein by ribosomal skipping at this peptide sequence. Here, we tested the function of the Thosea asigna insect virus 2A (T2A) peptide in the branchiopod crustacean Daphnia magna-an emerging model of evolutionary developmental biology. First, we used transgenic Daphnia that expresses a potential bicistronic RNA containing mCherry and histone H2B- green fluorescent protein (GFP) open reading frames upstream and downstream of the T2A sequence, respectively. Microscopic observation revealed difference of localization of the two proteins in the cell, homogenous distribution of mCherry and nuclear localization of H2B-GFP. Second, we changed localization of mCherry from cytoplasm to plasma membrane by attachment of a consensus myristoylation motif in the bicistronic reporter. RNA that codes for this new bicistronic reporter was injected into eggs. At gastrulation stage, we found spectrally distinct fluorescence with enough intensity and resolution to detect membrane localized mCherry and nuclear GFP. These results indicate that the T2A peptide functions in D. magna and T2A-mediated bicistronic expression would be a promising tool for evo-devo studies of this species.
Asunto(s)
Animales Modificados Genéticamente/genética , Daphnia/genética , Genes/genética , Proteínas Virales/genética , Animales , Animales Modificados Genéticamente/crecimiento & desarrollo , Membrana Celular/genética , Membrana Celular/ultraestructura , Citoplasma/genética , Citoplasma/ultraestructura , Daphnia/crecimiento & desarrollo , Regulación del Desarrollo de la Expresión Génica , Genes Reporteros , Proteínas Fluorescentes Verdes/genética , Óvulo/crecimiento & desarrollo , Péptidos/genética , Ribosomas/genéticaRESUMEN
How symbioses between bacteria and aquatic animals influence food webs in freshwater ecosystems is a fundamental question in ecology. We investigated symbiosis between a crustacean zooplankton Daphnia magna and its dominant bacterial symbiont Limnohabitans, an abundant and globally distributed freshwater Betaproteobacteria. Aposymbiotic juvenile Daphnia were prepared and exposed to any of four Limnohabitans sp. - Limnohabitans strains DM1, 2KL-3, 2KL-7 and Limnohabitans planktonicus strain II-D5, all previously found in D. magna digestive tract or culture. Re-infected Daphnia were cultured until they produced the first clutch of juveniles. Limnohabitans strain DM1 and L. planktonicus strain II-D5 successfully re-infected Daphnia through single exposure at the first instar juvenile stage. In contrast to aposymbiotic Daphnia that produced non-viable juveniles, re-infected Daphnia produced viable juveniles and increased fecundity to levels of that of symbiotic Daphnia. Re-infected Daphnia did not increase their number of eggs nor growth rates. Limnohabitans strains 2KL-7 and 2KL-3 could not recover fecundity even in multiple exposures during culture. This study shows the functional evidence demonstrating that a single bacterium Limnohabitans regulates fecundity of the consumer Daphnia through symbiosis. Our results indicated that symbiotic relationship between major bacterioplankton and zooplankton is important for maintaining the population of zooplankton in freshwater ecosystems.
Asunto(s)
Betaproteobacteria/fisiología , Daphnia/microbiología , Daphnia/fisiología , Simbiosis , Zooplancton/microbiología , Zooplancton/fisiología , Animales , Betaproteobacteria/genética , Betaproteobacteria/crecimiento & desarrollo , Betaproteobacteria/aislamiento & purificación , Ecosistema , Fertilidad , Cadena Alimentaria , Agua Dulce/microbiologíaRESUMEN
Liposome display is a method that enables the directed evolution of membrane proteins in vitro. The method is based on the syntheses of membrane proteins using an in vitro transcription-translation system (IVTT) inside cell-sized phospholipid vesicles from a single copy of template DNA. So far, a large number of membrane proteins have been synthesized by IVTT; however, none of these proteins, except for α-hemolysin, has been tested for use in gene screening with liposome display. Here, using EmrE, a multidrug transporter from Escherichia coli,, as a model protein, we developed an in vitro screening system of the transporter gene based on its function, which was made possible by using liposome display. The screening was performed based on two functions of EmrE: substrate transport activity and membrane integration activity. Starting from a mock gene library prepared by mixing an active and an inactive gene, 10- to 35-fold enrichment of the active genes was obtained, which was in the same range as theoretically calculated values. In addition, starting from a random mutagenized gene library of wild-type EmrE, a gene pool exhibiting ethidium bromide (EtBr) transport activity higher than that of the wild-type was obtained, indicating the validity of the established screening system.
Asunto(s)
Antiportadores/metabolismo , Proteínas de Escherichia coli/metabolismo , Escherichia coli/metabolismo , Liposomas/metabolismo , Antiportadores/genética , Sistema Libre de Células , Proteínas de Escherichia coli/genética , Etidio/química , Etidio/metabolismo , Citometría de Flujo , Colorantes Fluorescentes/química , Colorantes Fluorescentes/metabolismo , Biblioteca de Genes , Liposomas/química , Biosíntesis de ProteínasRESUMEN
Nuclear factor κB (NFκB), which is composed of the RelA and p50 subunits, binds to NFκB response elements (NREs) and stimulates the transcription of inflammation-related genes. Here, locked nucleic acid (LNA) antisense oligonucleotides (ASOs) complementary to the termini of the 3'- and 5'-untranslated regions (UTRs) of the RelA mRNA were generated; these molecules were named 3'-LNA and 5'-LNA, respectively. To evaluate their effects on NFκB activity, HeLa cells were co-transfected with the LNA ASOs and a luciferase reporter gene carrying an NRE. Transfection of the cells with 3'-LNA reduced NFκB activity by 30-40%, without affecting RelA mRNA accumulation. Concomitant transfection of HeLa cells with 5'-LNA and 3'-LNA resulted in a 70% reduction in NFκB activity. Furthermore, partial poly(A) tail shortening occurred in LNA ASO-transfected cells. We also employed triethylene glycol as a spacer to link 5'-LNA and 3'-LNA. Reporter gene assays showed that the spacer-linked LNA ASO reduced NFκB activity similarly to a combination of 5'-LNA and 3'-LNA. In addition, an in vitro translation assay revealed that spacer-linked LNA ASOs inhibited the translation of a target mRNA in a specific manner. In summary, this study describes a novel antisense method capturing the target mRNA at independent positions.
Asunto(s)
Regulación hacia Abajo , Oligonucleótidos Antisentido/farmacología , Oligonucleótidos/farmacología , ARN Mensajero/genética , Factor de Transcripción ReIA/genética , Regiones no Traducidas 3' , Regiones no Traducidas 5' , Regulación de la Expresión Génica/efectos de los fármacos , Células HeLa , Humanos , FN-kappa B/metabolismoRESUMEN
Methanosarcina species pyrrolysyl-tRNA synthetase (PylRS) attaches Pyl to its cognate amber suppressor tRNA. The introduction of two mutations (Y384F and Y306A) into PylRS was previously shown to generate a mutant, designated LysZ-RS, that was able to attach N-benzyloxycarbonyl-L-lysine (LysZ) to its cognate tRNA. Despite the potential of LysZ derivatives, further LysZ-RS engineering has not been performed; consequently, we aimed to generate LysZ-RS mutants with improved LysZ incorporation activity through in vitro directed evolution. Using a liposome-based in vitro compartmentalization (IVC) approach, we screened a randomly mutagenized gene library of LysZ-RS and obtained a mutant that showed increased LysZ incorporation activity both in vitro and in vivo. The ease and high flexibility of liposome-based IVC should enable the evolution of not only LysZ-RS that can attach various LysZ derivatives but also of other enzymes involved in protein translation.
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Aminoacil-ARNt Sintetasas/biosíntesis , Aminoacil-ARNt Sintetasas/química , Evolución Molecular , Liposomas/metabolismo , Lisina/análogos & derivados , Aminoacil-ARNt Sintetasas/genética , Biblioteca de Genes , Lisina/química , Modelos Moleculares , Análisis de SecuenciaRESUMEN
The zooplankton Daphnia magna has been widely used as a test organism to assess the toxicity of chemical substances because of its important position in aquatic ecology and its ease of handling. Among the various endpoints for toxicity evaluation, growth rate is one of the most critical and many studies have been conducted. However, measurement f growth rate was time-consuming and not an ideal endpoint in terms of screening. In this study, we demonstrated a live imaging method to monitor the growth of daphnids by area measurement. In this method, daphnid images were directly obtained from a swimming chamber and these images were processed for the evaluation of growth. The reliability of this method was confirmed by comparison with the conventional dry weight method of the same animals. The body area of daphnids using this method showed a strong correlation with the dry weight method, with R(2) = 0.930. In addition, we quantified the effect of a toxicant, fenoxycarb, on the growth of the animal. Fenoxycarb concentrations of 0, 0.027,0.27 and 2.7 µg l(1) were tested and their effects on growth were estimated by the live imaging method. In the toxicity test,the area of daphnids decreased significantly with increasing fenoxycarb concentration. These results indicate that the present live imaging method is a reliable approach for daphnid toxicity testing. This method is promising for high through put Daphnia toxicity tests and real-time individual observations.
Asunto(s)
Daphnia/efectos de los fármacos , Daphnia/crecimiento & desarrollo , Procesamiento de Imagen Asistido por Computador , Imagen Óptica/métodos , Fenilcarbamatos/toxicidad , Pruebas de Toxicidad/métodos , Animales , Relación Dosis-Respuesta a Droga , Diseño de Equipo , Pruebas de Toxicidad/instrumentaciónRESUMEN
We report a case of far-advanced esophageal cancer in which induction chemotherapy followed by chemoradiotherapy achieved complete remission. A 61-year-old female presented to our hospital with dyspnea and hoarseness. CT revealed a tumor at the cervical esophagus invading and narrowing the trachea, a bulky metastasis at the right paraesophageal node, and nodal metastases at levels II and III of the left neck. No finding indicated other distant metastases. According to findings of CT and endoscopy, she was diagnosed with unresectable cancer at the cervical esophagus(cT4bN1M1[LYM], according to UICC-TNM 7 th). After 2 courses of induction chemotherapy(DTX, CDDP, and 5-FU), the tumor's volume was remarkably reduced. Thereafter, chemoradiotherapy with CDDP, 5-FU, and 60 Gy/30 Fr was administered. After 7 months of systemic chemotherapy with paclitaxel following chemoradiotherapy, the patient was judged to have complete remission based on CT and endoscopic findings. After additional administration of S-1 for 5 months, systemic chemotherapy was ceased. The patient has survived without disease progression for 22 months following initiation of treatment. It is thought that induction chemotherapy followed by chemoradiotherapy might improve local control and survival of patients with far-advanced esophageal cancers, such as our patient.
Asunto(s)
Protocolos de Quimioterapia Combinada Antineoplásica/uso terapéutico , Neoplasias Esofágicas/tratamiento farmacológico , Quimioterapia de Inducción , Quimioradioterapia , Cisplatino/administración & dosificación , Docetaxel , Neoplasias Esofágicas/patología , Neoplasias Esofágicas/terapia , Femenino , Fluorouracilo/administración & dosificación , Humanos , Persona de Mediana Edad , Estadificación de Neoplasias , Inducción de Remisión , Taxoides/administración & dosificaciónRESUMEN
The water flea Daphnia is a new model organism for ecological, evolutionary, and toxicological genomics. Detailed functional analysis of genes newly discovered through genomic approaches often requires overexpression of the identified protein. In the present study, we report the microinjection of in vitro-synthesized RNAs into the eggs as a method for overexpressing ubiquitous proteins in Daphnia magna. We injected a 1.3-kb mRNA that coded for the red fluorescent protein (DsRed2) flanked by UTRs from the ubiquitously expressed elongation factor 1α-1 (EF1α-1) into D. magna embryos. DsRed2 fluorescence in the embryos was measured 24 h after microinjection. Unexpectedly, the reporter RNA containing the 522-bp full-length EF1α-1 3' UTR failed to induce fluorescence. To assess reporter expression, the length of the 3' UTR that potentially contained negative regulatory elements of protein expression, including AU-rich regions and Musashi binding elements, was serially reduced from the 3' end. Assessing all injected RNA alternatives, mRNA containing the first 60 bp of the 3' UTR gave rise to the highest fluorescence, 14 times the Daphnia auto-fluorescence. In contrast, mRNA lacking the entire 3' UTR hardly induced any change in fluorescence intensity. This is the first evaluation of UTRs of mRNAs delivered into Daphnia embryos by microinjection for overexpressing proteins. The mRNA with truncated 3' UTRs of Daphnia EF1α-1 will be useful not only for gain-of-function analyses but also for labeling proteins and organelles with fluorescent proteins in Daphnia.
Asunto(s)
Regiones no Traducidas 3'/genética , Daphnia/genética , Factor 1 de Elongación Peptídica/genética , ARN Mensajero/genética , Animales , ADN Recombinante , Daphnia/embriología , Daphnia/metabolismo , Fluorescencia , Expresión Génica , Genes Reporteros , Proteínas Luminiscentes/genética , Proteínas Luminiscentes/metabolismo , Microinyecciones , Conformación de Ácido Nucleico , Óvulo , Plásmidos/genética , ARN Mensajero/química , Análisis de Secuencia de ADNRESUMEN
A physiological function of the ß-glucans which constitute the cell wall of Saccharomyces cerevisiae is to activate immune cells. Here, we focused on the immunostimulation ability of S. cerevisiae itself to give this ability to fermented foods including yeast. Previously, we found that in S. cerevisiae the deletion of MCD4 gene causes exposure of ß-glucans on the cell surface and that the mcd4 deletion mutant strongly enhances immunity in vitro and in vivo. However, this is not a practical strain but a genetically modified strain with an antibiotic resistance gene, and growth was very slow. The aim of this study was to acquire a practical strain capable of strongly activating a macrophage. The parental strain y-21 was mutated with ethyl methanesulfonate, and the resulting strain was screened. Two mutants (AP-57 and AQ-37) were obtained. AQ-37 had the same fermentation capacity as y-21. In addition, a mutation point of AQ-37 was identified, suggesting that the mutation of NDD1 gene affects the cell wall structure and confers a high ability for macrophage stimulation. The obtained yeast may activate immune cells in materials to which the yeast is added.
Asunto(s)
Activación de Macrófagos/inmunología , Macrófagos/inmunología , Macrófagos/microbiología , Saccharomyces cerevisiae/inmunología , Saccharomyces cerevisiae/aislamiento & purificación , Secuencia de Aminoácidos , Animales , Línea Celular , Pared Celular/metabolismo , Fermentación , Genes Fúngicos , Macrófagos/metabolismo , Ratones , Datos de Secuencia Molecular , Mutación , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crecimiento & desarrollo , Alineación de Secuencia , Análisis de Secuencia de ADN , Factor de Necrosis Tumoral alfa/biosíntesisRESUMEN
Diploid baker's yeast capable of strongly activating a mouse macrophage was constructed based on haploid mutant AQ-37 obtained previously. The obtained strain BQ-55 activated also human immune cells. To clarify a factor for the activation, the cell wall structure, especially the ß-glucan structure, was analyzed, suggesting that the length of branching, ß-1,6-glucan, may be one of the factors.