Low Energy Isomers and Infrared Spectra Simulations of C4H3N, C4H4N, and C4H5N and Related Ions.

The relative stability of pyrrole derivatives were investigated by applying a global minimum (GM) search for the low-lying energy structures of C4HnN (n = 3-5) clusters at neutral, anionic, and cationic states. Several low-energy structures, previously not reported, were identified. The present results reveal a preference for cyclic and conjugated systems for the C4H5N and C4H4N compounds. In particular, the structures of the cationic and neutral C4H3N species are different from the anionic ones. For the neutrals and cations, cumulenic carbon chains were found, while for the anions, conjugated open chains were obtained. Of particular relevance, the GM candidates C4H4N+ and C4H4N are different from those reported previously. For the most stable structures, infrared spectra were simulated and the main vibrational bands were assigned. Also, a comparison with available laboratory data was done aiming to corroborate with experimental detection.

NEXAFS and MS-AES spectroscopy of the C 1s and Cl 2p excitation and ionization of chlorobenzene: Production of dicationic species.

We report on single- and double-charge photofragment formation by synchrotron radiation, following C 1s core excitation and ionization and Cl 2p inner excitation and ionization of chlorobenzene, C6H5Cl. From a comparison of experimental near-edge X-ray absorption fine structure spectra and theoretical ab initio calculations, the nature of various core and inner shell transitions of the molecule and pure atomic features were identified. To shed light on the normal Auger processes following excitation or ionization of the molecule at the Cl 2p or C 1s sites, we addressed the induced ionic species formation. With energy resolved electron spectra and ion time-of-flight spectra coincidence measurements, the ionic species were correlated with binding energy regions and initial states of vacancies. We explored the formation of the molecular dication C6H5Cl2+, the analogue benzene dication C6H42+, and the singly charged species produced by single loss of a carbon atom, C5HnCl+. The appearance and intensities of the spectral features associated with these ionic species are shown to be strongly site selective and dependent on the energy ranges of the Auger electron emission. Unexpected intensities for the analogue double charged benzene C6H42+ ion were observed with fast Auger electrons. The transitions leading to C6H5Cl2+ were identified from the binding energy representation of high resolution electron energy spectra. Most C6H5Cl2+ ions decay into two singly charged moieties, but intermediate channels are opened leading to other heavy dicationic species, C6H42+ and C6H4Cl2+, the channel leading to the first of these being much more favored than the other.

Production of Long-Lived Benzene Dications from Electron Impact in the 20-2000 eV Energy Range Combined with the Search for Global Minimum Structures.

In this work, we report a systematic search of metastable C6Hn2+ (n = 1-6) dications from electron impact time-of-flight measurements of several benzene derivatives in combination with global minimum search based on the genetic algorithm. Our theoretical calculations reveal that the C6Hn2+ (n < 6) global minimum structures are completely different from that of the benzene dication, featuring linear carbon chains and/or cyclopropenylium moieties. Experimentally, the doubly charged species were investigated for a wide range of electron impact energies, from 20 to 2000 eV, for benzene and several monosubstituted compounds containing either electron-withdrawing or -donating groups. Furthermore, the C6Hn2+ production, evaluated from the yields of the dications with respect to that of the parent ion (or parent dication), was compared to those obtained from charge exchange in the doubly charged 2E spectra and electron impact experiments available in the literature. The yields of the long-lived benzene dications were contrasted to those analogues formed in chlorobenzene. Moreover, the formation of C6Hn2+ species is strongly dependent on the nature of substituent groups, with electron-withdrawing ones favoring the dication formation.

Unexpected reversal of stability in strained systems containing one-electron bonds.

Ring strain energy is a very well documented feature of neutral cycloalkanes, and influences their structural, thermochemical and reactivity properties. In this work, we apply density functional theory and high-level coupled cluster calculations to describe the geometry and relative stability of C6H12+˙ radical cations, whose cyclic isomers are prototypes of singly-charged cycloalkanes. Molecular ions with the mentioned stoichiometry were produced via electron impact experiments using a gaseous cyclohexane sample (20-2000 eV). From our calculations, in addition to structures that resemble linear and branched alkenes as well as distinct conformers of cyclohexane, we have found low-lying species containing three-, four- and five-membered rings with the presence of an elongated C-C bond. Remarkably, the stability trend of these ring-bearing radical cations is anomalous, and the three-membered species are up to 11.3 kcal mol-1 more stable than the six-membered chair structure. Generalized Valence Bond calculations and the Spin Coupled theory with N electrons and M orbitals were used in conjunction with the Generalized Product Function Energy Partitioning (GPF-EP) method and Interference Energy Analysis (IEA) to describe the chemical bonding in such moieties. Our results confirm that these elongated C-C motifs are one-electron sigma bonds. Our calculations also reveal the effects that drive thermochemical preference of strained systems over their strained-free isomers, and the origin of the unusual stability trend observed for cycloalkane radical cations.

Soft X-ray Chlorine Photolysis on Chlorobenzene Ice: An Experimental and Theoretical Study.

An experimental and theoretical study of the photoinduced homolysis of the carbon-chlorine bond in an ice matrix of chlorobenzene is presented. A condensed chlorobenzene film has been grown in situ and near edge X-ray fine structure (NEXAFS) spectra were collected after exposing the condensed film to a monochromatic photon beam centered at the 2822 eV resonant excitation of chlorine and at 2850 eV. The photoabsorption to the Cl 1s → σ* and Cl 1s → π* states has been measured and the hypothesis of free radical coupling reactions was investigated via time-dependent density functional theory (TD-DFT) and complete active space self-consistent field (CASSCF) calculations. Also, potential energy pathways to the C-Cl cleavage have been obtained at the CASSCF level to the Cl 1s → σ*, 1s → π*, and 1s → ∞ states. A strong dissociative character was only found for the Cl 1s → σ* resonance.

Doubly and Triply Charged Species Formed from Chlorobenzene Reveal Unusual C-Cl Multiple Bonding.

In free-radical halogenation of aromatics, singly charged ions are usually formed as intermediates. These stable species can be easily observed by time-of-flight mass spectrometry (TOF-MS). Here we used electron and proton beams to ionize chlorobenzene (C6H5Cl) and investigate the ions stability by TOF-MS. Additionally to the singly charged parent ion and its fragments, we find a significant yield of doubly and triply charged parent ions not previously reported. In order to characterize these species, we used high-level theoretical methods based on density functional theory (DFT), coupled-cluster (CC), and generalized valence bond (GVB) to calculate the structure, relative stabilities, and bonding of these dications and trications. The most stable isomers exhibit unusual carbon-chlorine multiple bonding: a terminal C═Cl double bond in a formyl-like CHCl moiety (1, rC-Cl = 1.621 Å) and a ketene-like C═C═Cl cumulated species (2, rC-Cl = 1.542 Å). The calculations suggest that an excited state of 2 has a nitrile-like C≡Cl triple bond structure.

Fragment and cluster ions from gaseous and condensed pyridine produced under electron impact.

We report on direct measurement of all major ion-fragments and cluster-ions formed during high-energy electron impact of 2 keV on gaseous and condensed-phase pyridine. The ion-fragments of the parent pyridine cation are discussed in groups according to the number of atoms from the aromatic ring. The ion yield distributions within these groups show significant shifts towards higher masses for condensed pyridine compared to gaseous pyridine due to hydrogen migration. A wide spectrum of desorbed hydrogenated fragment-ions and ionic clusters with masses up to 320 u are observed for pyridine. The ion yields for the protonated parent molecule (C5H5NH+), the dehydrogenated dimer (C10H9N2+) and the dehydrogenated trimer (C15H12N3+) depend on the mass of the desorbing ionic clusters. The strongest cluster signals are assigned to binding between the parent cation and subunits of the pyridine molecule. Quantum-chemical calculations reveal that the formation of a bond between the pyridine molecules and a carbenium ion is crucial for the stability of selected cluster ions.

Isomeric signatures in the fragmentation of pyridazine and pyrimidine induced by fast ion impact.

We present fast proton impact induced fragmentations of pyrimidine and pyridazine as an experimental resource to investigate isomeric signatures. Major isomeric imprints are identified for few fragment ions and differences of more than an order of magnitude for the cross sections of fragments of the same mass were measured. The observation of the molecular structure of these isomers gives no apparent indication for the reasons for such substantial differences. It is verified that the simple displacement of the position of one nitrogen atom strongly inhibits or favors the production of some ionic fragment species. The dependency of the fragmentation cross sections on the proton impact energy, investigated by means of time of flight mass spectroscopy and of a model calculation based in first order perturbation theory, allows us to disentangle the complex collision dynamics of the ionic fragments. The proton-induced fragmentation discriminates rather directly the association between a molecular orbital ionization and the fragment-ions creation and abundance, as well as how the redistribution of the energy imparted to the molecules takes place, triggering not only single but also double vacancy and leads to specific fragmentation pathways.

Absolute total and partial dissociative cross sections of pyrimidine at electron and proton intermediate impact velocities.

Absolute total non-dissociative and partial dissociative cross sections of pyrimidine were measured for electron impact energies ranging from 70 to 400 eV and for proton impact energies from 125 up to 2500 keV. MOs ionization induced by coulomb interaction were studied by measuring both ionization and partial dissociative cross sections through time of flight mass spectrometry and by obtaining the branching ratios for fragment formation via a model calculation based on the Born approximation. The partial yields and the absolute cross sections measured as a function of the energy combined with the model calculation proved to be a useful tool to determine the vacancy population of the valence MOs from which several sets of fragment ions are produced. It was also a key point to distinguish the dissociation regimes induced by both particles. A comparison with previous experimental results is also presented.