RESUMEN
Photoisomerization of biliverdin (BV) chromophore triggers the photoresponse in native Agp1 bacteriophytochrome. We discuss heterogeneity in phytochrome Pr form to account for the shape of the absorption profile. We investigated different regions of the absorption profile by angle balanced polarization resolved femtosecond VIS pump-IR probe spectroscopy. We studied the Pr form of Agp1 with its natural chromophore and with a sterically locked 18Et-BV (locked Agp1). We followed the dynamics and orientations of the carbonyl stretching vibrations of ring D and ring A in their ground and electronically excited states. Photoisomerization of ring D is reflected by strong signals of the ring D carbonyl vibration. In contrast, orientational data on ring A show no rotation of ring A upon photoexcitation. Orientational data allow excluding a ZZZasa geometry and corroborates a nontwisted ZZZssa geometry of the chromophore. We found no proof for heterogeneity but identified a new, to our knowledge, electronic transition in the absorption profile at 644 nm (S0âS2). Excitation of the S0âS2 transition will introduce a more complex photodynamics compared with S0âS1 transition. Our approach provides fundamental information on disentanglement of absorption profiles, identification of chromophore structures, and determination of molecular groups involved in the photoisomerization process of photoreceptors.
Asunto(s)
Agrobacterium tumefaciens/metabolismo , Proteínas Bacterianas/metabolismo , Electrones , Sondas Moleculares/metabolismo , Fitocromo/metabolismo , Absorción , Espectrofotometría Infrarroja , Factores de Tiempo , VibraciónRESUMEN
Controlling site-selectivity and reactivity in chemical reactions continues to be a key challenge in modern synthetic chemistry. Here, we demonstrate the discovery of site-selective chemical reactions on the water surface via a sequential assembly approach. A negatively charged surfactant monolayer on the water surface guides the electrostatically driven, epitaxial, and aligned assembly of reagent amino-substituted porphyrin molecules, resulting in a well-defined J-aggregated structure. This constrained geometry of the porphyrin molecules prompts the subsequent directional alignment of the perylenetetracarboxylic dianhydride reagent, enabling the selective formation of a one-sided imide bond between porphyrin and reagent. Surface-specific in-situ spectroscopies reveal the underlying mechanism of the dynamic interface that promotes multilayer growth of the site-selective imide product. The site-selective reaction on the water surface is further demonstrated by three reversible and irreversible chemical reactions, such as imide-, imine-, and 1, 3-diazole (imidazole)- bonds involving porphyrin molecules. This unique sequential assembly approach enables site-selective chemical reactions that can bring on-water surface synthesis to the forefront of modern organic chemistry.
RESUMEN
We combine femtosecond polarization resolved VIS-pump IR-probe spectroscopy with DFT and TD-DFT calculations to identify and assign absorption bands to electronic transitions for corroles. These macrocycles and their corresponding metal complexes are receiving great attention because of their utility in many fields, while many of their spectroscopic features have not yet been fully described. Analysis of the perturbed free induction decay provides information about the bleaching signal at time zero and allows for determination of overlapping excited state and bleaching signal amplitudes. The S(0) â S(1) and S(0) â S(2) transitions in the Q-band of the hexacoordinated Al(tpfc)(py)(2) and Br(8)Al(tpfc)(py)(2) absorption spectra are explicitly assigned. Angles between these electronic transition dipole moments (tdms) with a single vibrational transition dipole moment of (53 ± 2)° and (34 ± 2)° when excited at 580 and 620 nm for hexacoordinated Al(tpfc)(py)(2) and (51 ± 2)° and (43 ± 2)° when excited at 590 and 640 nm for hexacoordinated Br(8)Al(tpfc)(py)(2) were determined. The relative angles between the two lowest electronic tdms are (90 ± 8)° and (94 ± 3)° for Al(tpfc)(py)(2) and Br(8)Al(tpfc)(py)(2), respectively. Angles are determined before time zero by polarization resolved perturbed free induction decay and after time zero by polarization resolved transients. Comparison of corrole's wave functions with those of porphine show that the reduced symmetry in the corrole molecules results in lifting of Q-band degeneracy and major reorientation of the electronic transition dipole moments within the molecular scaffold. This information is necessary in designing optimal corrole-based electron and energy transfer complexes.
RESUMEN
Photoinduced electron transfer systems can mimic certain features of natural photosynthetic reaction centers, which are crucial for solar energy production. Among other tetra-pyrroles, the versatile chemical and photophysical properties of corroles make them very promising donors applicable in donor-acceptor complexes. Here, we present a first comprehensive study of ultrafast photoinduced electron transfer in a self-assembling sulfonated aluminum corrole-methylviologen complex combining visible and mid-IR transient absorption spectroscopy. The noncovalent D-A association of the corrole-methylviologen complex has the great advantage that photoinduced charge separation becomes possible even though the back electron transfer (BET) rate is large. Initial forward electron transfer from corrole to methylviologen is observed on an â¼130 fs time scale. Subsequent back electron transfer takes place with τBET = (1.8 ± 0.5) ps, revealing very complex relaxation dynamics. Direct probing in the mid-IR allows us to unravel the back electron transfer and cooling dynamics/electronic reorganization. Upon tracing the dynamics of the methylviologen-radical marker band at 1640 cm-1 and the CâC stretching of corrole at around 1500 cm-1, we observe that large amounts of excess energy survive the back transfer, leading to the formation of hot ground state absorption. A closer examination of the signal after 300 ps, surviving the back transfer, exhibits a charge-separation yield of 10-15%.
Asunto(s)
Aluminio , Electrones , Transporte de Electrón , Paraquat , PorfirinasRESUMEN
A new mixed experimental and theoretical approach for determining the exact three-dimensional orientation of electronic transition dipole moments (tdms) within the molecular frame is discussed. Results of applying this method on Chlorophyll a and the dye Coumarin 314 (C314) are presented. For C314 the possible influence of a mixture of E- and Z-isomers in the sample on the determined electronic tdm is investigated. Moreover, the robustness of the method is investigated with the C314 data.
RESUMEN
A method is presented that combines femtosecond polarization resolved UV/visible pump-IR probe spectroscopy and density functional theory calculations in determining the three-dimensional orientation of an electronic transition dipole moment (tdm) within the molecular structure. The method is demonstrated on the approximately planar molecule coumarin 314 (C314) dissolved in acetonitrile, which can exist in two ground state configurations: the E- and the Z-isomer. Based on an exhaustive search analysis on polarization resolved measurement data for four different vibrational modes, it is concluded that C314 in acetonitrile is the E-isomer. The electronic tdm vector for the electronic S(0)-->S(1) transition is determined and the analysis shows that performing the procedure for four vibrational modes instead of the minimally required three reduces the 1sigma probability area from 2.34% to 2.24% of the solution space. Moreover, the fastest rotational correlation time tau(c) for the C314 E-isomer is determined to be 26+/-2 ps.
Asunto(s)
Algoritmos , Cumarinas/química , Cristalografía/métodos , Modelos Químicos , Espectrofotometría Ultravioleta/métodos , Simulación por Computador , Isomerismo , Conformación MolecularRESUMEN
Chlorophyll a (Chl a) is the most abundant pigment on earth. In all plants, algae, and cyanobacteria, it plays a pivotal role as an antenna and reaction center pigment in the primary steps of photosynthesis. In the past, a true three-dimensional (3D) experimental determination of the Qy electronic transition dipole moment orientation could not be obtained. With combined femtosecond polarization resolved VIS pump-IR probe experiments and theoretical calculations of the infrared transition dipole moments (tdm's) in the electronic ground state, we determined the 3D orientation of the Qy electronic tdm of Chl a within the molecular structure. Polarization resolved experiments provided angles of the Qy electronic tdm with three different infrared tdm's, whose orientations within the molecular structure were taken from our theoretical calculations. The orientation of the Qy tdm results from the intersection of all three angles and was found to have an angle of (78 +/- 3)degrees with the x-axis, (12 3)degrees with the y-axis, and (86 +/- 2)degrees with the z-axis.