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1.
Phys Chem Chem Phys ; 25(4): 3472-3484, 2023 Jan 27.
Artículo en Inglés | MEDLINE | ID: mdl-36637052

RESUMEN

Orotate phosphoribosyltransferase (OPRT) catalyses the reversible phosphoribosyl transfer from α-D-5-phosphoribosyl-1-pyrophosphate (PRPP) to orotic acid (OA) to yield orotidine 5'-monophosphate (OMP) during the de novo synthesis of nucleotides. Numerous studies have reported the inhibition of this reaction as a strategy to check diseases like tuberculosis, malaria and cancer. Insight into the inhibition of this reaction is, therefore, of urgent interest. In this study, we implemented a QM/MM framework on OPRT derived from Saccharomyces cerevisiae to obtain insights into the competitive binding of OA and OA-mimetic inhibitors by quantifying their interactions with OPRT. 4-Hydroxy-6-methylpyridin-2(1H) one showed the best inhibiting activity among the structurally similar OA-mimetic inhibitors, as quantified from the binding energetics. Our analysis of protein-ligand interactions unveiled the association of this inhibitory ligand with a strong network of hydrogen bonds, a large contribution of hydrophobic contacts, and bridging water molecules in the binding site. The ortho-substituted CH3 group in the compound resulted in a large population of π-electrons in the aromatic ring of this inhibitor, supporting the ligand binding further.


Asunto(s)
Orotato Fosforribosiltransferasa , Ácido Orótico , Ácido Orótico/metabolismo , Ligandos , Orotato Fosforribosiltransferasa/química , Orotato Fosforribosiltransferasa/metabolismo , Sitios de Unión
2.
Mar Drugs ; 20(11)2022 Nov 10.
Artículo en Inglés | MEDLINE | ID: mdl-36355027

RESUMEN

The sulfated echinoside A (EA) and holothurin A (HA) are two prominent saponins in sea cucumber with high hemolytic activity but also superior lipid-lowering activity. Deglycosylated derivatives EA2 and HA2 exhibit low hemolysis compared to EA and HA, but their efficacies on lipid metabolism regulation remains unknown. In this study, fatty acids-treated HepG2 cells and orotic acid-treated rats were used to investigate the lipid-lowering effects of sea cucumber saponin derivatives. Both the saponin and derivatives could effectively alleviate lipid accumulation in HepG2 model, especially EA and EA2. Moreover, though the lipid-lowering effect of EA2 was not equal with EA at the same dosage of 0.05% in diet, 0.15% dosage of EA2 significantly reduced hepatic steatosis rate, liver TC and TG contents by 76%, 41.5%, and 63.7%, respectively, compared to control and reversed liver histopathological features to normal degree according to H&E stained sections. Possible mechanisms mainly included enhancement of fatty acids ß-oxidation and cholesterol catabolism through bile acids synthesis and excretion, suppression of lipogenesis and cholesterol uptake. It revealed that the efficacy of EA2 on lipid metabolism regulation was dose-dependent, and 0.15% dosage of EA2 possessed better efficacy with lower toxicity compared to 0.05% dosage of EA.


Asunto(s)
Enfermedad del Hígado Graso no Alcohólico , Saponinas , Pepinos de Mar , Ratas , Animales , Humanos , Pepinos de Mar/metabolismo , Ácido Orótico/metabolismo , Ácido Orótico/farmacología , Saponinas/farmacología , Saponinas/metabolismo , Ácidos Grasos/metabolismo , Células Hep G2 , Hígado , Metabolismo de los Lípidos , Colesterol/metabolismo , Enfermedad del Hígado Graso no Alcohólico/metabolismo
3.
Angew Chem Int Ed Engl ; 61(11): e202112572, 2022 03 07.
Artículo en Inglés | MEDLINE | ID: mdl-35007387

RESUMEN

A reaction between two prebiotically plausible building blocks, hydantoin and glyoxylate, generates both the nucleobase orotate, a precursor of biological pyrimidines, and pyruvate, a core metabolite in the citric acid cycle and amino acid biosynthesis. The reaction proceeds in water to provide significant yields of the two widely divergent chemical motifs. Additionally, the reaction of thiohydantoin and glyoxylate produces thioorotate in high yield under neutral aqueous conditions. The use of an open-chain thiohydantoin derivative also enables the potential pre-positioning of a nucleosidic bond prior to the synthesis of an orotate nucleoside. The observation that diverse building blocks of modern metabolism can be produced in a single reaction pot, from common reactants under mild conditions, supports the plausibility of orthogonal chemistries operating at the origins of chemical evolution.


Asunto(s)
Origen de la Vida , Ácido Orótico/metabolismo , Ácido Pirúvico/metabolismo , Ácido Orótico/química , Ácido Pirúvico/química
4.
Mol Cell ; 42(1): 127-36, 2011 Apr 08.
Artículo en Inglés | MEDLINE | ID: mdl-21474074

RESUMEN

Telomere-associated position-effect variegation (TPEV) in budding yeast has been used as a model for understanding epigenetic inheritance and gene silencing. A widely used assay to identify mutants with improper TPEV employs the URA3 gene at the telomere of chromosome VII-L that can be counterselected with 5-fluoroorotic acid (5-FOA). 5-FOA resistance has been inferred to represent lack of transcription of URA3 and therefore to represent heterochromatin-induced gene silencing. For two genes implicated in telomere silencing, POL30 and DOT1, we show that the URA3 telomere reporter assay does not reflect their role in heterochromatin formation. Rather, an imbalance in ribonucleotide reductase (RNR), which is induced by 5-FOA, and the specific promoter of URA3 fused to ADH4 at telomere VII-L are jointly responsible for the variegated phenotype. We conclude that metabolic changes caused by the drug employed and certain mutants being studied are incompatible with the use of certain prototrophic markers for TPEV.


Asunto(s)
Silenciador del Gen , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Telómero/genética , Telómero/metabolismo , Antígenos Nucleares/genética , Antígenos Nucleares/metabolismo , Efectos de la Posición Cromosómica , Genes Fúngicos , N-Metiltransferasa de Histona-Lisina/genética , N-Metiltransferasa de Histona-Lisina/metabolismo , Modelos Genéticos , Mutación , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , Ácido Orótico/análogos & derivados , Ácido Orótico/metabolismo , Antígeno Nuclear de Célula en Proliferación , Ribonucleótido Reductasas/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo
5.
J Am Chem Soc ; 139(45): 16048-16051, 2017 11 15.
Artículo en Inglés | MEDLINE | ID: mdl-29058891

RESUMEN

Orotidine 5'-monophosphate decarboxylase (OMPDC) catalyzes the decarboxylation of 5-fluoroorotate (FO) with kcat/Km = 1.4 × 10-7 M-1 s-1. Combining this and related kinetic parameters shows that the 31 kcal/mol stabilization of the transition state for decarboxylation of OMP provided by OMPDC represents the sum of 11.8 and 10.6 kcal/mol stabilization by the substrate phosphodianion and the ribosyl ring, respectively, and an 8.6 kcal/mol stabilization from the orotate ring. The transition state for OMPDC-catalyzed decarboxylation of FO is stabilized by 5.2, 7.2, and 9.0 kcal/mol, respectively, by 1.0 M phosphite dianion, d-glycerol 3-phosphate and d-erythritol 4-phosphate. The stabilization is due to the utilization of binding interactions of the substrate fragments to drive an enzyme conformational change, which locks the orotate ring of the whole substrate, or the substrate pieces in a caged complex. We propose that enzyme-activation is a possible, and perhaps probable, consequence of any substrate-induced enzyme conformational change.


Asunto(s)
Ácido Orótico/análogos & derivados , Orotidina-5'-Fosfato Descarboxilasa/metabolismo , Biocatálisis , Cinética , Modelos Moleculares , Conformación Molecular , Ácido Orótico/química , Ácido Orótico/metabolismo , Orotidina-5'-Fosfato Descarboxilasa/química , Especificidad por Sustrato
6.
J Inherit Metab Dis ; 40(3): 423-431, 2017 05.
Artículo en Inglés | MEDLINE | ID: mdl-28205048

RESUMEN

BACKGROUND: Elevated urinary excretion of orotic acid is associated with treatable disorders of the urea cycle and pyrimidine metabolism. Establishing the correct and timely diagnosis in a patient with orotic aciduria is key to effective treatment. Uridine monophosphate synthase is involved in de novo pyrimidine synthesis. Uridine monophosphate synthase deficiency (or hereditary orotic aciduria), due to biallelic mutations in UMPS, is a rare condition presenting with megaloblastic anemia in the first months of life. If not treated with the pyrimidine precursor uridine, neutropenia, failure to thrive, growth retardation, developmental delay, and intellectual disability may ensue. METHODS AND RESULTS: We identified mild and isolated orotic aciduria in 11 unrelated individuals with diverse clinical signs and symptoms, the most common denominator being intellectual disability/developmental delay. Of note, none had blood count abnormalities, relevant hyperammonemia or altered plasma amino acid profile. All individuals were found to have heterozygous alterations in UMPS. Four of these variants were predicted to be null alleles with complete loss of function. The remaining variants were missense changes and predicted to be damaging to the normal encoded protein. Interestingly, family screening revealed heterozygous UMPS variants in combination with mild orotic aciduria in 19 clinically asymptomatic family members. CONCLUSIONS: We therefore conclude that heterozygous UMPS-mutations can lead to mild and isolated orotic aciduria without clinical consequence. Partial UMPS-deficiency should be included in the differential diagnosis of mild orotic aciduria. The discovery of heterozygotes manifesting clinical symptoms such as hypotonia and developmental delay are likely due to ascertainment bias.


Asunto(s)
Complejos Multienzimáticos/genética , Complejos Multienzimáticos/metabolismo , Orotato Fosforribosiltransferasa/deficiencia , Orotidina-5'-Fosfato Descarboxilasa/deficiencia , Errores Innatos del Metabolismo de la Purina-Pirimidina/metabolismo , Anemia Megaloblástica/genética , Anemia Megaloblástica/metabolismo , Niño , Preescolar , Femenino , Heterocigoto , Humanos , Lactante , Discapacidad Intelectual/genética , Discapacidad Intelectual/metabolismo , Masculino , Mutación/genética , Orotato Fosforribosiltransferasa/genética , Orotato Fosforribosiltransferasa/metabolismo , Ácido Orótico/metabolismo , Orotidina-5'-Fosfato Descarboxilasa/genética , Orotidina-5'-Fosfato Descarboxilasa/metabolismo , Errores Innatos del Metabolismo de la Purina-Pirimidina/genética , Pirimidinas/metabolismo , Trastornos Innatos del Ciclo de la Urea/genética , Trastornos Innatos del Ciclo de la Urea/metabolismo , Uridina/metabolismo
7.
Biosci Biotechnol Biochem ; 81(6): 1227-1234, 2017 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28290772

RESUMEN

We screened for factors involved in the cellulose-responsive induction of cellulose biomass-degrading enzyme genes from approximately 12,000 Aspergillus aculeatus T-DNA insertion mutants harboring a transcriptional fusion between the FIII-avicelase gene (cbhI) promoter and the orotidine 5'-monophosphate decarboxylase gene. Analysis of 5-fluoroorodic acid (5-FOA) sensitivity, cellulose utilization, and cbhI expression of the mutants revealed that a mutant harboring T-DNA at the dipeptidyl peptidase IV (dppIV) locus had acquired 5-FOA resistance and was deficient in cellulose utilization and cbhI expression. The deletion of dppIV resulted in a significant reduction in the cellulose-responsive expression of both cbhI as well as genes controlled by XlnR-independent and XlnR-dependent signaling pathways at an early phase in A. aculeatus. In contrast, the dppIV deletion did not affect the xylose-responsive expression of genes under the control of XlnR. These results demonstrate that DppIV participates in cellulose-responsive induction in A. aculeatus.


Asunto(s)
Aspergillus/genética , Celulasas/genética , Celulosa/metabolismo , Dipeptidil Peptidasa 4/genética , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica , Orotidina-5'-Fosfato Descarboxilasa/genética , Aspergillus/efectos de los fármacos , Aspergillus/enzimología , Celulasas/metabolismo , Celulosa/farmacología , ADN Bacteriano/genética , ADN Bacteriano/metabolismo , Dipeptidil Peptidasa 4/agonistas , Dipeptidil Peptidasa 4/metabolismo , Proteínas Fúngicas/metabolismo , Eliminación de Gen , Mutagénesis Insercional , Ácido Orótico/análogos & derivados , Ácido Orótico/metabolismo , Ácido Orótico/farmacología , Orotidina-5'-Fosfato Descarboxilasa/metabolismo , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Transducción de Señal , Xilosa/metabolismo , Xilosa/farmacología
8.
Khirurgiia (Mosk) ; (3): 50-54, 2017.
Artículo en Ruso | MEDLINE | ID: mdl-28374713

RESUMEN

AIM: To study neocollagenogenesis after implantation of polypropylene endoprosthesis and polypropylene combined with polylactic acid endoprosthesis on background of «potassium orotate¼ administration. MATERIAL AND METHODS: We used two different types of endoprosthesis in the experiment. The first type was made of just polypropylene, the second type was made of polypropylene combined with polylactic acid. Histological examination was performed using polarizing microscopy. Collagen types I and III ratio in connective tissue around the prosthesis was analyzed according to the color that was individual for each type. RESULTS: The results were significantly better in case of collagenogenesis stimulation with Potassium orotate within 30 days and later for one type of endoprosthesis. Also we revealed that collagenogenesis and paraprosthesis capsule formation were more active in case of combined endoprosthesis. We revealed stimulating action of «Potassium Orotate¼ for collegenogenesis process, this fact was proved by increased collagen I/III ratio. CONCLUSION: Optimization of collagenogenesis was based on persistent 1,37-fold increase of collagen I/III ratio in case of combined endoprosthesis after 90 days. It was manifested by accelerated formation of connective tissue capsule and facilitated early isolation of the implant from surrounding tissues.


Asunto(s)
Colágeno/metabolismo , Tejido Conectivo , Implantes Experimentales , Ácido Orótico , Poliésteres/farmacología , Polipropilenos/farmacología , Implantación de Prótesis/instrumentación , Regeneración/efectos de los fármacos , Experimentación Animal , Animales , Materiales Biocompatibles/metabolismo , Materiales Biocompatibles/farmacología , Disponibilidad Biológica , Tejido Conectivo/efectos de los fármacos , Tejido Conectivo/metabolismo , Tejido Conectivo/patología , Ratones , Ácido Orótico/metabolismo , Ácido Orótico/farmacología , Compuestos de Potasio/metabolismo , Compuestos de Potasio/farmacología , Implantación de Prótesis/métodos , Regeneración/fisiología
10.
Neuropediatrics ; 46(2): 123-5, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25757096

RESUMEN

Hereditary orotic aciduria is a rare metabolic disease that results from a defect of uridine-5-monophosphate synthase (UMPS). In affected patients, main clinical symptoms are a markedly increased urinary excretion of orotic acid combined with megaloblastic anemia. This report describes a new case of UMPS deficiency without megaloblastic anemia but with epilepsy.


Asunto(s)
Anemia Megaloblástica/complicaciones , Epilepsia/complicaciones , Enfermedades Metabólicas/complicaciones , Complejos Multienzimáticos/deficiencia , Orotato Fosforribosiltransferasa/deficiencia , Ácido Orótico/metabolismo , Orotidina-5'-Fosfato Descarboxilasa/deficiencia , Anemia Megaloblástica/metabolismo , Preescolar , Epilepsia/metabolismo , Humanos , Masculino , Enfermedades Metabólicas/genética
11.
Phys Chem Chem Phys ; 17(27): 17790-6, 2015 Jul 21.
Artículo en Inglés | MEDLINE | ID: mdl-26087682

RESUMEN

The dihydroorotate dehydrogenase (DHOD) enzyme catalyzes the unique redox reaction in the de novo pyrimidine biosynthesis pathway. In this reaction, the oxidation of dihydroorotate (DHO) to orotate (OA) and reduction of the flavin mononucleotide (FMN) cofactor is catalysed by DHOD. The class 2 DHOD, to which the human enzyme belongs, was experimentally shown to follow a stepwise mechanism but the data did not allow the determination of the order of bond-breaking in a stepwise oxidation of DHO. The goal of this study is to understand the reaction mechanism at the molecular level of class 2 DHOD, which may aid in the design of inhibitors that selectively impact the activity of only certain members of the enzyme family. In this paper, the catalytic mechanism of oxidation of DHO to OA in human DHOD was studied using a hybrid Quantum Mechanical/Molecular Mechanical (QM/MM) approach and Molecular Dynamics (MD) simulations. The free energy barriers calculated reveal that the mechanism in human DHOD occurs via a stepwise reaction pathway. In the first step, a proton is abstracted from the C5 of DHO to the deprotonated Ser215 side chain. Whereas, in the second step, the transfer of the hydride or hydride equivalent from the C6 of DHO to the N5 of FMN, where free energy barrier calculated by the DFT/MM level is 10.84 kcal mol(-1). Finally, a residual decomposition analysis was carried out in order to elucidate the influence of the catalytic region residues during DHO oxidation.


Asunto(s)
Simulación de Dinámica Molecular , Ácido Orótico/análogos & derivados , Ácido Orótico/metabolismo , Oxidorreductasas actuantes sobre Donantes de Grupo CH-CH/metabolismo , Teoría Cuántica , Sitios de Unión , Biocatálisis , Dihidroorotato Deshidrogenasa , Mononucleótido de Flavina/química , Humanos , Ácido Orótico/química , Oxidación-Reducción , Oxidorreductasas actuantes sobre Donantes de Grupo CH-CH/química , Estructura Terciaria de Proteína , Termodinámica
12.
Curr Microbiol ; 71(2): 229-34, 2015 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-25917504

RESUMEN

The impact of orotate accumulation in the medically important bacterium Pseudomonas aeruginosa was studied by deleting pyrE, the gene encoding orotate phosphoribosyltransferase and responsible for converting orotate into orotate monophosphate within the de novo pyrimidine synthesis pathway. The pyrE mutant accumulated orotate and exhibited decreased production of hemolysin, casein protease, and elastase. Feeding orotate at a concentration of 51.25 µM to the wild type, PAO1, likewise decreased production of these factors except for hemolysin, which was not affected. A significant increase in the pigments pyocyanin and pyoverdin was also observed. Pyocyanin increase in the pyrE mutant was heightened when the mutant was supplemented with orotate. Although pyoverdin production in the wild-type PAO1 was unaffected by orotate supplementation, a decrease in the mutant's production was observed when supplemented with orotate. These results indicate a significant reduction in virulence factor production in the pyrE mutant and reduction in some virulence factors in the wild type when supplemented with orotate.


Asunto(s)
Proteínas Bacterianas/metabolismo , Ácido Orótico/metabolismo , Pseudomonas aeruginosa/metabolismo , Pirimidinas/metabolismo , Factores de Virulencia/metabolismo , Proteínas Bacterianas/genética , Regulación Bacteriana de la Expresión Génica , Orotato Fosforribosiltransferasa/genética , Orotato Fosforribosiltransferasa/metabolismo , Pseudomonas aeruginosa/enzimología , Pseudomonas aeruginosa/genética , Factores de Virulencia/genética
13.
Mol Microbiol ; 90(2): 443-55, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23980694

RESUMEN

African trypanosomes are capable of both de novo synthesis and salvage of pyrimidines. The last two steps in de novo synthesis are catalysed by UMP synthase (UMPS) - a bifunctional enzyme comprising orotate phosphoribosyl transferase (OPRT) and orotidine monophosphate decarboxylase (OMPDC). To investigate the essentiality of pyrimidine biosynthesis in Trypanosoma brucei, we generated a umps double knockout (DKO) line by gene replacement. The DKO was unable to grow in pyrimidine-depleted medium in vitro, unless supplemented with uracil, uridine, deoxyuridine or UMP. DKO parasites were completely resistant to 5-fluoroorotate and hypersensitive to 5-fluorouracil, consistent with loss of UMPS, but remained sensitive to pyrazofurin indicating that, unlike mammalian cells, the primary target of pyrazofurin is not OMPDC. The null mutant was unable to infect mice indicating that salvage of host pyrimidines is insufficient to support growth. However, following prolonged culture in vitro, parasites regained virulence in mice despite retaining pyrimidine auxotrophy. Unlike the wild-type, both pyrimidine auxotrophs secreted substantial quantities of orotate, significantly higher in the virulent DKO line. We propose that this may be responsible for the recovery of virulence in mice, due to host metabolism converting orotate to uridine, thereby bypassing the loss of UMPS in the parasite.


Asunto(s)
Complejos Multienzimáticos/genética , Orotato Fosforribosiltransferasa/genética , Orotidina-5'-Fosfato Descarboxilasa/genética , Pirimidinas/metabolismo , Trypanosoma brucei brucei/metabolismo , Trypanosoma brucei brucei/patogenicidad , Amidas , Animales , Transporte Biológico , Línea Celular , Desoxiuridina/metabolismo , Fluorouracilo/farmacología , Técnicas de Inactivación de Genes , Ratones/parasitología , Complejos Multienzimáticos/metabolismo , Orotato Fosforribosiltransferasa/metabolismo , Ácido Orótico/análogos & derivados , Ácido Orótico/metabolismo , Ácido Orótico/farmacología , Orotidina-5'-Fosfato Descarboxilasa/metabolismo , Pirazoles , Pirimidinas/biosíntesis , Ribonucleósidos/farmacología , Ribosa , Transfección , Tripanocidas/farmacología , Trypanosoma brucei brucei/efectos de los fármacos , Uracilo/metabolismo , Uridina/metabolismo , Uridina Monofosfato/metabolismo , Virulencia
14.
Biochemistry ; 52(3): 537-46, 2013 Jan 22.
Artículo en Inglés | MEDLINE | ID: mdl-23276261

RESUMEN

The syntheses of two novel truncated analogs of the natural substrate orotidine 5'-monophosphate (OMP) for orotidine 5'-monophosphate decarboxylase (OMPDC) with enhanced reactivity toward decarboxylation are reported: 1-(ß-d-erythrofuranosyl)-5-fluoroorotic acid (FEO) and 5'-deoxy-5-fluoroorotidine (5'-dFO). A comparison of the second-order rate constants for the OMPDC-catalyzed decarboxylations of FEO (10 M⁻¹ s⁻¹) and 1-(ß-d-erythrofuranosyl)orotic acid (EO, 0.026 M⁻¹ s⁻¹) shows that the vinyl carbanion-like transition state is stabilized by 3.5 kcal/mol by interactions with the 5-F substituent of FEO. The OMPDC-catalyzed decarboxylations of FEO and EO are both activated by exogenous phosphite dianion (HPO3²â»), but the 5-F substituent results in only a 0.8 kcal stabilization of the transition state for the phosphite-activated reaction of FEO. This provides strong evidence that the phosphite-activated OMPDC-catalyzed reaction of FEO is not limited by the chemical step of decarboxylation of the enzyme-bound substrate. Evidence is presented that there is a change in the rate-limiting step from the chemical step of decarboxylation for the phosphite-activated reaction of EO, to closure of the phosphate gripper loop and an enzyme conformational change at the ternary E•FEO•HPO3²â» complex for the reaction of FEO. The 4'-CH3 and 4'-CH2OH groups of 5'-dFO and orotidine, respectively, result in identical destabilizations of the transition state for the unactivated decarboxylation of 2.9 kcal/mol. By contrast, the 4'-CH3 group of 5'-dFO and the 4'-CH2OH group of orotidine result in very different 4.7 and 8.3 kcal/mol destabilizations of the transition state for the phosphite-activated decarboxylation. Here, the destabilizing effect of the 4'-CH3 substituent at 5'-dFO is masked by the rate-limiting conformational change that depresses the third-order rate constant for the phosphite-activated reaction of the parent substrate FEO.


Asunto(s)
Ácido Orótico/análogos & derivados , Orotidina-5'-Fosfato Descarboxilasa/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/enzimología , Biocatálisis , Tampones (Química) , Descarboxilación , Activación Enzimática , Estabilidad de Enzimas , Cinética , Proteínas Mutantes/metabolismo , Ácido Orótico/síntesis química , Ácido Orótico/química , Ácido Orótico/metabolismo , Orotidina-5'-Fosfato Descarboxilasa/genética , Concentración Osmolar , Fosfitos/química , Conformación Proteica , Proteínas de Saccharomyces cerevisiae/genética , Especificidad por Sustrato , Uridina/análogos & derivados , Uridina/química , Uridina/metabolismo , Uridina Monofosfato/análogos & derivados , Uridina Monofosfato/química , Uridina Monofosfato/metabolismo
15.
J Proteome Res ; 12(4): 1946-55, 2013 Apr 05.
Artículo en Inglés | MEDLINE | ID: mdl-23448543

RESUMEN

Oxidative stress is a determinant of liver steatosis and the progression to more severe forms of disease. The present study investigated the effect of paraoxonase-1 (PON1) deficiency on histological alterations and hepatic metabolism in mice fed a high-fat high-cholesterol diet. We performed nontargeted metabolomics on liver tissues from 8 male PON1-deficient mice and 8 wild-type animals fed a high-fat, high-cholesterol diet for 22 weeks. We also measured 8-oxo-20-deoxyguanosine, reduced and oxidized glutathione, malondialdehyde, 8-isoprostanes and protein carbonyl concentrations. Results indicated lipid droplets in 14.5% of the hepatocytes of wild-type mice and in 83.3% of the PON1-deficient animals (P < 0.001). The metabolomic assay included 322 biochemical compounds, 169 of which were significantly decreased and 16 increased in PON1-deficient mice. There were significant increases in lipid peroxide concentrations and oxidative stress markers. We also found decreased glycolysis and the Krebs cycle. The urea cycle was decreased, and the pyrimidine cycle had a significant increase in orotate. The pathways of triglyceride and phospholipid synthesis were significantly increased. We conclude that PON1 deficiency is associated with oxidative stress and metabolic alterations leading to steatosis in the livers of mice receiving a high-fat high-cholesterol diet.


Asunto(s)
Arildialquilfosfatasa/deficiencia , Colesterol/efectos adversos , Dieta Alta en Grasa/efectos adversos , Hígado Graso/etiología , Metabolismo de los Lípidos/efectos de los fármacos , Aminoácidos/metabolismo , Animales , Arildialquilfosfatasa/genética , Biomarcadores/metabolismo , Hígado Graso/metabolismo , Hígado Graso/patología , Glucosa/metabolismo , Glutatión/metabolismo , Hígado/efectos de los fármacos , Hígado/metabolismo , Hígado/patología , Masculino , Metabolómica/métodos , Ratones , Ratones Endogámicos C57BL , Ácido Orótico/metabolismo , Estrés Oxidativo
16.
Phys Chem Chem Phys ; 15(43): 18863-71, 2013 Nov 21.
Artículo en Inglés | MEDLINE | ID: mdl-24084894

RESUMEN

Chagas' disease is considered to be a health problem affecting millions of people in Latin America. This disease is caused by the parasite Trypanosoma cruzi. Recently dihydroorotate dehydrogenase class 1A from Trypanosoma cruzi (TcDHODA) was shown to be essential for the survival and growth of T. cruzi and proposed as a drug target against Chagas' disease. This enzyme catalyzes the oxidation of (S)-dihydroorotate to orotate, with a proposed catalytic cycle consisting of two half-reactions. In the first half-reaction dihydroorotate is oxidized to orotate, with the consequent reduction of the flavin mononucleotide cofactor. In the second half-reaction fumarate is reduced to succinate. The first oxidation half-reaction may occur via a concerted or a stepwise mechanism. Herein, the catalytic mechanism of TcDHODA has been studied using hybrid Quantum Mechanical/Molecular Mechanical (QM/MM) Molecular Dynamics (MD) simulations. The free energy profiles derived from the bidimensional potential of mean force reveal more details for two half-reaction processes.


Asunto(s)
Oxidorreductasas actuantes sobre Donantes de Grupo CH-CH/metabolismo , Trypanosoma cruzi/enzimología , Biocatálisis , Dihidroorotato Deshidrogenasa , Enlace de Hidrógeno , Simulación de Dinámica Molecular , Ácido Orótico/análogos & derivados , Ácido Orótico/química , Ácido Orótico/metabolismo , Oxidación-Reducción , Oxidorreductasas actuantes sobre Donantes de Grupo CH-CH/química , Teoría Cuántica , Electricidad Estática
17.
Reprod Biol ; 23(3): 100790, 2023 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-37478515

RESUMEN

Orotic acid (OA) is a natural product that acts as a precursor in the pyrimidine nucleotide biosynthesis pathway. Most studies concerning administration of OA focus on its therapeutic effects; however, its effect on tumours is unclear. We aimed to determine whether treatment with OA influences the viability and apoptosis of normal (HGrC1) and tumour-derived (KGN) human ovarian granulosa cells. The effects of OA (10-250 µM) on viability and apoptosis of both cell lines were determined by using alamarBlue and assessing caspase-3/7 activity, respectively. Annexin V binding and loss of membrane integrity were evaluated in KGN cells. The cell cycle and proliferation of HGrC1 cells were assessed by performing flow cytometric and DNA content analyses, respectively. The influence of OA (10 and 100 µM) on cell cycle- and apoptosis-related gene expression was assessed by RT-qPCR in both cell lines. Mitochondrial activity was analysed by JC-1 staining in HGrC1 cells. In KGN cells, OA reduced viability and increased caspase-3/7 activity, but did not affect mRNA expression of Caspase 3, BAX, and BCL2. OA enhanced proliferation and mitochondrial activity in HGrC1 cells without activating apoptosis. This study demonstrates that the anti-cancer properties of OA in ovarian granulosa tumour cells are not related to changes in apoptosis-associated gene expression, but to increased caspase-3/7 activity. Thus, OA is a promising therapeutic agent for ovarian granulosa tumours. Further, our results suggest that differences in basal expression of cell cycle- and apoptosis-related genes between the two cell lines are responsible for their different responses to OA.


Asunto(s)
Ácido Orótico , Neoplasias Ováricas , Femenino , Adulto , Humanos , Caspasa 3/metabolismo , Ácido Orótico/metabolismo , Ácido Orótico/farmacología , Células de la Granulosa , Apoptosis , Neoplasias Ováricas/genética
18.
Biochemistry ; 51(22): 4397-405, 2012 Jun 05.
Artículo en Inglés | MEDLINE | ID: mdl-22531064

RESUMEN

Dimeric Salmonella typhimurium orotate phosphoribosyltransferase (OMP synthase, EC 2.4.2.10), a key enzyme in de novo pyrimidine nucleotide synthesis, has been cocrystallized in a complete substrate E·MgPRPP·orotate complex and the structure determined to 2.2 Å resolution. This structure resembles that of Saccharomyces cerevisiae OMP synthase in showing a dramatic and asymmetric reorganization around the active site-bound ligands but shares the same basic topology previously observed in complexes of OMP synthase from S. typhimurium and Escherichia coli. The catalytic loop (residues 99-109) contributed by subunit A is reorganized to close the active site situated in subunit B and to sequester it from solvent. Furthermore, the overall structure of subunit B is more compact, because of movements of the amino-terminal hood and elements of the core domain. The catalytic loop of subunit B remains open and disordered, and subunit A retains the more relaxed conformation observed in loop-open S. typhimurium OMP synthase structures. A non-proline cis-peptide formed between Ala71 and Tyr72 is seen in both subunits. The loop-closed catalytic site of subunit B reveals that both the loop and the hood interact directly with the bound pyrophosphate group of PRPP. In contrast to dimagnesium hypoxanthine-guanine phosphoribosyltransferases, OMP synthase contains a single catalytic Mg(2+) in the closed active site. The remaining pyrophosphate charges of PRPP are neutralized by interactions with Arg99A, Lys100B, Lys103A, and His105A. The new structure confirms the importance of loop movement in catalysis by OMP synthase and identifies several additional movements that must be accomplished in each catalytic cycle. A catalytic mechanism based on enzymic and substrate-assisted stabilization of the previously documented oxocarbenium transition state structure is proposed.


Asunto(s)
Orotato Fosforribosiltransferasa/química , Orotato Fosforribosiltransferasa/metabolismo , Ácido Orótico/metabolismo , Salmonella typhimurium/enzimología , Dominio Catalítico , Cristalografía por Rayos X , Magnesio/metabolismo , Modelos Moleculares , Fosforribosil Pirofosfato/metabolismo , Unión Proteica , Conformación Proteica , Multimerización de Proteína , Salmonella typhimurium/química , Salmonella typhimurium/metabolismo
19.
Plant Physiol ; 156(1): 78-89, 2011 May.
Artículo en Inglés | MEDLINE | ID: mdl-21367966

RESUMEN

Uridine-5'-monophosphate synthase (UMPS), the critical step of the de novo pyrimidine biosynthesis pathway, which is a housekeeping plastid process in higher plants, was investigated in a marine diatom, the most crucial primary producer in the marine environment. A mutagenesis using an alkylation agent, N-ethyl-N-nitrosourea, was carried out to the marine diatom Phaeodactylum tricornutum. Cells were treated with 1.0 mg mL(-1) N-ethyl-N-nitrosourea and were screened on agar plates containing 100 to 300 mg L(-1) 5-fluoroorotidic acid (5-FOA). Two clones survived the selection and were designated as Requiring Uracil and Resistant to FOA (RURF) 1 and 2. The 50% effective concentration of 5-FOA on growth of RURF1 was about 5 mm, whereas that in wild-type cells was 30 µm. The ability to grow in the absence of uracil was restored by a P. tricornutum gene that potentially encoded UMPS or the human umps gene, HUMPS. Because the P. tricornutum gene was able to restore growth in the absence of uracil, it was designated as ptumps, encoding a major functional UMPS in P. tricornutum. RNA interference to the ptumps targeting the 5' region of ptumps resulted in the occurrence of a clear RURF phenotype in P. tricornutum. This RNA interference phenotype was reverted to the wild type by the insertion of HUMPS, confirming that the ptumps encodes UMPS. These results showed direct evidence of the occurrence of novel-type UMPS in a marine diatom and also revealed the potential usage of this gene silencing and complementation system for molecular tools for this organism.


Asunto(s)
Diatomeas/enzimología , Complejos Multienzimáticos/genética , Orotato Fosforribosiltransferasa/genética , Orotidina-5'-Fosfato Descarboxilasa/genética , Uracilo/metabolismo , Secuencia de Aminoácidos , Vías Biosintéticas , Diatomeas/efectos de los fármacos , Diatomeas/genética , Diatomeas/crecimiento & desarrollo , Prueba de Complementación Genética , Humanos , Datos de Secuencia Molecular , Complejos Multienzimáticos/metabolismo , Mutagénesis , Mutación , Orotato Fosforribosiltransferasa/metabolismo , Ácido Orótico/análogos & derivados , Ácido Orótico/metabolismo , Ácido Orótico/farmacología , Orotidina-5'-Fosfato Descarboxilasa/metabolismo , Fenotipo , Filogenia , Estructura Terciaria de Proteína , Interferencia de ARN , Alineación de Secuencia
20.
Mol Ther ; 19(5): 854-9, 2011 May.
Artículo en Inglés | MEDLINE | ID: mdl-21386824

RESUMEN

Urea cycle defects presenting early in life with hyperammonemia remain difficult to treat and commonly necessitate liver transplantation. Gene therapy has the potential to prevent hyperammonemic episodes while awaiting liver transplantation, and possibly also to avert the need for transplantation altogether. Ornithine transcarbamylase (OTC) deficiency, the most prevalent urea cycle disorder, provides an ideal model for the development of liver-targeted gene therapy. While we and others have successfully cured the spf(ash) mouse model of OTC deficiency using adeno-associated virus (AAV) vectors, a major limitation of this model is the presence of residual OTC enzymatic activity which confers a mild phenotype without clinically significant hyperammonemia. To better model severe disease we devised a strategy involving AAV2/8-mediated delivery of a short hairpin RNA (shRNA) to specifically knockdown residual endogenous OTC messenger RNA (mRNA). This strategy proved highly successful with vector-treated mice developing severe hyperammonemia and associated neurological impairment. Using this system, we showed that the dose of an AAV rescue construct encoding the murine OTC (mOTC) cDNA required to prevent hyperammonemia is fivefold lower than that required to control orotic aciduria. This result is favorable for clinical translation as it indicates that the threshold for therapeutic benefit is likely to be lower than indicated by earlier studies.


Asunto(s)
Terapia Genética , Hiperamonemia/genética , Hiperamonemia/terapia , Enfermedad por Deficiencia de Ornitina Carbamoiltransferasa/genética , Enfermedad por Deficiencia de Ornitina Carbamoiltransferasa/terapia , Ornitina Carbamoiltransferasa/metabolismo , Regiones no Traducidas 3'/genética , Animales , Dependovirus/genética , Modelos Animales de Enfermedad , Técnicas de Silenciamiento del Gen , Técnicas de Transferencia de Gen , Vectores Genéticos/genética , Células HEK293 , Humanos , Hígado/patología , Ratones , Ratones Endogámicos C3H , Ratones Endogámicos C57BL , Ratones Transgénicos , Ornitina Carbamoiltransferasa/genética , Ácido Orótico/análisis , Ácido Orótico/metabolismo , ARN Mensajero/genética , ARN Interferente Pequeño/genética
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