Ring-Closure on the Rocks in a Prebiotic Environment.

Ring-closure is a key step in current pyrimidine anabolism and one may wonder whether cyclisation reactions could be promoted in the geochemical context at the origins of life, i. e. with the help of minerals. Various prebiotic minerals were tested in this work, including silica, carbonates, microporous minerals. In particular, the role of zinc ions supported on minerals was investigated in view of its presence in the catalytic site of cyclic amidohydrolase enzymes. Based on in situ (TGA: ThermoGravimetric Analysis, ATR-IR: Attenuated Total Reflectance-InfraRed) and ex situ (1 H NMR- Nuclear Magnetic Resonance) characterisations, we identified the products of thermal activation of NCA (N-carbamoyl-aspartic acid) in wetting-and-drying scenarios on the surface of minerals. NCA can cyclize extensively only on some surfaces, with the predominant product being 5-carboxymethylhydantoin (Hy) rather than dihydroorotate (DHO), while there is a competition with hydrolysis on others. Replacing the enzymes with heterogeneous catalysts also works with other reactions catalysed by enzymes of the cyclic amidohydrolases family. The role of the hydrophilicity/hydrophobicity of minerals as well as the regioselectivity of the cyclisation (5-carboxymethylhydantoin versus dihydroorotate) are examined.

Single-enzyme biomineralization of cadmium sulfide nanocrystals with controlled optical properties.

Nature has evolved several unique biomineralization strategies to direct the synthesis and growth of inorganic materials. These natural systems are complex, involving the interaction of multiple biomolecules to catalyze biomineralization and template growth. Herein we describe the first report to our knowledge of a single enzyme capable of both catalyzing mineralization in otherwise unreactive solution and of templating nanocrystal growth. A recombinant putative cystathionine γ-lyase (smCSE) mineralizes CdS from an aqueous cadmium acetate solution via reactive H2S generation from l-cysteine and controls nanocrystal growth within the quantum confined size range. The role of enzymatic nanocrystal templating is demonstrated by substituting reactive Na2S as the sulfur source. Whereas bulk CdS is formed in the absence of the enzyme or other capping agents, nanocrystal formation is observed when smCSE is present to control the growth. This dual-function, single-enzyme, aerobic, and aqueous route to functional material synthesis demonstrates the powerful potential of engineered functional material biomineralization.

Water near its Supercritical Point and at Alkaline pH for the Production of Ferric Oxides and Silicates in Anoxic Conditions. A New Hypothesis for the Synthesis of Minerals Observed in Banded Iron Formations and for the Related Geobiotropic Chemistry inside Fluid Inclusions.

An alternative hypothesis for the origin of the banded iron formations and the synthesis of prebiotic molecules is presented here. I show the importance of considering water near its supercritical point and at alkaline pH. It is based on the chemical equation for the anoxic oxidation of ferrous iron into ferric iron at high-subcritical conditions of water and high pH, that I extract from E-pH diagrams drawn for corrosion purposes (Geophysical Research Abstracts Vol 15, EGU2013-22 Bassez 2013, Orig Life Evol Biosph 45(1):5-13, Bassez 2015, Procedia Earth Planet Sci 17, 492-495, Bassez 2017a, Orig Life Evol Biosph 47:453-480, Bassez 2017b). The sudden change in solubility of silica, SiO2, at the critical point of water is also considered. It is shown that under these temperatures and pressures, ferric oxides and ferric silicates can form in anoxic terrains. No FeII oxidation by UV light, neither by oxygen is needed to explain the minerals of the Banded Iron Formations. The intervention of any kind of microorganisms, either sulfate-reducing, or FeII-oxidizing or O2-producing, is not required. The chemical equation for the anoxic oxidation of ferrous iron is applied to the hydrolyses of fayalite, Fe2SiO4 and ferrosilite, FeSiO3. It is shown that the BIF minerals of the Hamersley Group, Western Australia, and the Transvaal Supergroup, South Africa, are those of fayalite and ferrosilite hydrolyses and carbonations. The dissolution of crustal fayalite and ferrosilite during water-rock interaction needs to occur at T&P just below the critical point of water and in a rising water which is undersaturated in SiO2. Minerals of BIFs which can then be ejected at the surface from venting arcs are ferric oxide hydroxides, hematite, FeIII-greenalite, siderite. The greenalite dehydrated product minnesotaite forms when rising water becomes supersaturated in SiO2, as also riebeckite and stilpnomelane. Long lengths of siderite without ferric oxides neither ferric silicates can occur since the exothermic siderite formation is not so much dependent in T&P. It is also shown that the H2 which is released during hydrolysis/oxidation of fayalite/ferrosilite can lead to components of life, such as macromolecules of amino acids which are synthesized from mixtures of (CO, N2, H2O) in Sabatier-Senderens/Fischer-Tropsch & Haber-Bosch reactions or microwave or gamma-ray excitation reactions. I propose that such geobiotropic synthesis may occur inside fluid inclusions of BIFs, in the silica chert, hematite, FeIII-greenalite or siderite. Therefore, the combination of high-subcritical conditions of water, high solubility of SiO2 at these T&P values, formation of CO also at these T&P, high pH and anoxic water, leads to the formation of ferric minerals and prebiotic molecules in the process of geobiotropy.

Biomineralization-inspired synthesis of functional organic/inorganic hybrid materials: organic molecular control of self-organization of hybrids.

Organisms produce various organic/inorganic hybrid materials, which are called biominerals. They form through the self-organization of organic molecules and inorganic elements under ambient conditions. Biominerals often have highly organized and hierarchical structures from nanometer to macroscopic length scales, resulting in their remarkable physical and chemical properties that cannot be obtained by simple accumulation of their organic and inorganic constituents. These observations motivate us to create novel functional materials exhibiting properties superior to conventional materials--both synthetic and natural. Herein, we introduce recent progress in understanding biomineralization processes at the molecular level and the development of organic/inorganic hybrid materials by these processes. We specifically outline fundamental molecular studies on silica, iron oxide, and calcium carbonate biomineralization and describe material synthesis based on these mechanisms. These approaches allow us to design a variety of advanced hybrid materials with desired morphologies, sizes, compositions, and structures through environmentally friendly synthetic routes using functions of organic molecules.

Thermal Stability of Goethite-Bound Natural Organic Matter Is Impacted by Carbon Loading.

Dissolved natural organic matter (NOM) sorption at mineral surfaces can significantly affect the persistence of organic carbon in soils and sediments. Consequently, determining the mechanisms that stabilize sorbed NOM is crucial for predicting the persistence of carbon in nature. This study determined the effects of loadings and pH on the thermal stability of NOM associated with synthetic goethite (α-FeOOH) particle surfaces, as a proxy for NOM-mineral interactions taking place in nature. NOM thermal stability was investigated using temperature-programmed desorption (TPD) in the 30-700 °C range to collect vibration spectra of thermally decomposing goethite-NOM assemblages, and to concomitantly analyze evolved gases using mass spectrometry. Results showed that NOM thermal stability, indicated by the range of temperatures in which CO2 evolved during thermal decomposition, was greatest in unbound NOM and lowest when NOM was bound to goethite. NOM thermal stability was also loading dependent. It decreased when loadings were in increased the 0.01 to 0.42 mg C m(-2) range, where the upper value corresponds to a Langmuirian adsorption maximum. Concomitant Fourier transform infrared (FTIR) spectroscopy measurement showed that these lowered stabilities could be ascribed to direct NOM-goethite interactions that dominated the NOM binding environment. Mineral surface interactions at larger loadings involved, on the contrary, a smaller fraction of the sorbed NOM, thus increasing thermal stability toward that of its unbound counterpart. This study thus identifies a sorption threshold below which NOM sorption to goethite decreases NOM thermal stability, and above which no strong effects are manifested. This should likely influence the fate of organic carbon exposed to thermal gradients in natural environments.

Mineralization of hetero bi-functional reactive dye in aqueous solution by Fenton and photo-Fenton reactions.

This study focused on the advanced oxidation of the hetero bi-functional reactive dye Sumifix Supra Yellow 3RF (CI Reactive Yellow 145) using dark Fenton and photo-Fenton conditions in a lab-scale experiment. A 2(3) factorial design was used to evaluate the effects of the three key factors: temperature, Fe(II) and H2O2 concentrations, for a dye concentration of 250 mg L(-1) with chemical oxygen demand (COD) of 172 mg L(-1) O2 at pH=3. The response function was the COD reduction. This methodology lets us find the effects and interactions of the studied variables and their roles in the efficiency of the treatment process. In the optimization, the correlation coefficients for the model (R2) were 0.948 and 0.965 for Fenton and photo-Fenton treatments, respectively. Under optimized reaction conditions: pH=3, temperature=298 K, [H2O2]=11.765 mM and [Fe(II)]=1.075 mM; 60 min of treatment resulted in a 79% and 92.2% decrease in COD, for the dye taken as the model organic compound, after Fenton and photo-Fenton treatments, respectively.

Ultrahydrous stishovite from high-pressure hydrothermal treatment of SiO2.

Stishovite (SiO(2) with the rutile structure and octahedrally coordinated silicon) is an important high-pressure mineral. It has previously been considered to be essentially anhydrous. In this study, hydrothermal treatment of silica glass and coesite at 350-550 °C near 10 GPa produces stishovite with significant amounts of H(2)O in its structure. A combination of methodologies (X-ray diffraction, thermal analysis, oxide melt solution calorimetry, secondary ion mass spectrometry, infrared and nuclear magnetic resonance spectroscopy) indicate the presence of 1.3 ± 0.2 wt % H(2)O and NMR suggests that the primary mechanism for the H(2)O uptake is a direct hydrogarnet-like substitution of 4H(+) for Si(4+), with the protons clustered as hydroxyls around a silicon vacancy. This substitution is accompanied by a substantial volume decrease for the system (SiO(2) + H(2)O), although the stishovite expands slightly, and it is only slightly unfavorable in energy. Stishovite could thus be a host for H(2)O at convergent plate boundaries, and in other relatively cool high-pressure environments.

Characterization and thermal dehydration kinetics of highly crystalline mcallisterite, synthesized at low temperatures.

The hydrothermal synthesis of a mcallisterite (Mg2(B6O7(OH)6)2 · 9(H2O)) mineral at low temperatures was characterized. For this purpose, several reaction temperatures (0-70°C) and reaction times (30-240 min) were studied. Synthesized minerals were subjected to X-ray diffraction (XRD), fourier transform infrared (FT-IR), and Raman spectroscopies and scanning electron microscopy (SEM). Additionally, experimental analyses of boron trioxide (B2O3) content and reaction yields were performed. Furthermore, thermal gravimetry and differential thermal analysis (TG/DTA) were used for the determination of thermal dehydration kinetics. According to the XRD results, mcallisterite, which has a powder diffraction file (pdf) number of "01-070-1902," was formed under certain reaction parameters. Pure crystalline mcallisterite had diagnostic FT-IR and Raman vibration peaks and according to the SEM analysis, for the minerals which were synthesized at 60°C and 30 min of reaction time, particle size was between 398.30 and 700.06 nm. Its B2O3 content and reaction yield were 50.80 ± 1.12% and 85.80 ± 0.61%, respectively. Finally, average activation energies (conversion values (α) that were selected between 0.1 and 0.6) were calculated as 100.40 kJ/mol and 98.31 kJ/mol according to Ozawa and Kissinger-Akahira-Sunose (KAS) methods, respectively.

Injectable collagen/α-tricalcium phosphate cement: collagen-mineral phase interactions and cell response.

A bone inspired material was obtained by incorporating collagen in the liquid phase of an α-tricalcium phosphate cement, either in solubilized or in fibrilized form. This material was able to set in situ, giving rise to a calcium deficient hydroxyapatite (CDHA)/collagen composite. The morphology and distribution of collagen in the composite was shown to be strongly affected by the collagen pre-treatment. The interactions between collagen and the inorganic phase were assessed by FTIR. A red shift of the amide I band was indicative of calcium chelation by the collagen carbonyl groups. The rate of CDHA formation was not affected when diluted collagen solutions (1 mg/ml) were used, whereas injectability improved. The presence of solubilized collagen, even in low amount (1 %), increased cell adhesion and proliferation on the composites. Still in the absence of osteogenic medium, significant ALP activity was detected both in the inorganic and the collagen-containing cements. The maximum ALP activity was advanced in the collagen-containing cement as compared to the inorganic cement.

Synthesized heterogeneous Fenton-like goethite (FeOOH) catalyst for degradation of p-chloronitrobenzene.

The removal of p-chloronitrobenzene (pCNB) was investigated by a heterogeneous Fenton-like system using a laboratory synthesized goethite (FeOOH) as catalyst. The influencing factors and the degradation pathway of pCNB were also evaluated. With a stronger catalytic activity than Fe(2+) catalyst, the synthesized FeOOH catalyst can significantly promote the decomposition of H(2)O(2), and the decomposition product hydroxyl radicals (·OH) can oxidize pCNB in the water effectively. The FeOOH catalyst can also adsorb a certain amount of pCNB, and the adsorption effect is related to the amount of FeOOH and the initial pH value of solution. The results of liquid chromatography-mass spectrometry (LC-MS) and gas chromatography-mass spectrometry (GC-MS) showed that the main intermediate products were phenolic compounds and carbonyl compounds. About 60% of pCNB was mineralized during the catalytic oxidation, and chlorine and nitro groups on benzene ring were converted into Cl(-) and NO(3)(-) after being attacked.

Mineral carbonation of gaseous carbon dioxide using a clay-hosted cation exchange reaction.

The mineral carbonation method is still a challenge in practical application owing to: (1) slow reaction kinetics, (2) high reaction temperature, and (3) continuous mineral consumption. These constraints stem from the mode of supplying alkaline earth metals through mineral acidification and dissolution. Here, we attempt to mineralize gaseous carbon dioxide into calcium carbonate, using a cation exchange reaction of vermiculite (a species of expandable clay minerals). The mineralization is operated by draining NaCI solution through vermiculite powders and continuously dropping into the pool of NaOH solution with CO2 gas injected. The mineralization temperature is regulated here at 293 and 333 K for 15 min. As a result of characterization, using an X-ray powder diffractometer and a scanning electron microscopy, two types of pure CaCO3 polymorphs (vaterite and calcite) are identified as main reaction products. Their abundance and morphology are heavily dependent on the mineralization temperature. Noticeably, spindle-shaped vaterite, which is quite different from a typical vaterite morphology (polycrystalline spherulite), forms predominantly at 333 K (approximately 98 wt%).

Influence of pH and oxidation state on the interaction of arsenic with struvite during mineral formation.

Struvite (MgNH(4)PO(4)·6H(2)O) precipitated from animal and human wastes may be a sustainable source of fertilizer. However, arsenic, present in some wastes, may be removed with struvite. Here the sorption of As with struvite during mineral formation at pH 8-11 was assessed. The yield of struvite increased with pH, and was highest at pH 10. For recovered struvite, XRD indicated reduced crystallinity and particle size, and FT-IR suggested less distortion of phosphate tetrahedra with increased pH. The As impurity did not affect the crystallinity or particle size, but did contribute to phosphate distortion. Sorption of As(V) was observed at all pH values, and was highest at pH 10. As(III) sorption was consistently lower than that of As(V), but increased with pH. XAFS suggested coprecipitation of As(V), and adsorption of As(III) as the potential sorption mechanisms. Solids derived from As(III) solutions exhibited dual mechanisms due to the partial oxidation of As(III) to As(V) in solution prior to sorption. For struvite recovery in the presence of As, optimizing the pH to improve yields may increase the As content. Adsorbed As(III) could be removed prior to fertilizer application, however coprecipitated As(V) will release upon mineral decomposition, linking its cycling to that of phosphorus.

Biotite-brine interactions under acidic hydrothermal conditions: fibrous illite, goethite, and kaolinite formation and biotite surface cracking.

To ensure safe and efficient geologic CO(2) sequestration (GCS), it is crucial to have a better understanding of CO(2)-brine-rock interactions under GCS conditions. In this work, using biotite (K(Mg,Fe)(3)AlSi(3)O(10)(OH,F)(2)) as a model clay mineral, brine-biotite interactions were studied under conditions relevant to GCS sites (95 °C, 102 atm CO(2), and 1 M NaCl solution). After reaction for 3-17 h, fast growth of fibrous illite on flat basal planes of biotite was observed. After 22-70 h reaction, the biotite basal surface cracked, resulting in illite detaching from the surface. Later on (96-120 h), the cracked surface layer was released into solution, thus the inner layer was exposed as a renewed flat basal surface. The cracking and detachment of the biotite surface layer increased the surface area in contact with solution and accelerated biotite dissolution. On biotite edge surfaces, Al-substituted goethite and kaolinite precipitated. In control experiments with water under the same temperature and pressure, neither macroscopic fibrous illite nor cracks were observed. This work provides unique information on biotite-brine interaction under acidic hydrothermal conditions.

Production of Mayenite Nanoparticles from the Toxic Cement Dust.

To overcome the key challenges associated with cement dust, such as inhalable size, toxic ions, and the existence of large quantities of useless materials, researchers investigated an innovative and unusual conversion of toxic cement dust into Mayenite nanoparticles. Mayenite is a natural structure that can be used as a filler in a variety of industrial applications. The formation of Mayenite nanoparticles was achieved through a thermal reaction at 1000°C for 2 h between cement dust and aluminum oxide. Different techniques were used to characterize the synthesized Mayenite nanoparticles, revealing the formation of the target phase as well as the reduction of toxic ions present in cement dust. According to Scherrer's equation, the crystallite size of bypass and synthesized Mayenite nanoparticles is 45 and 30 nm, respectively. Also, with the aid of TEM analysis, the particle size distribution of the produced Mayenite nanoparticles was found to be 27±7 nm. The toxic ions, especially chlorides and sulphates, were reduced by 86% and 50%, respectively, according to X-ray fluorescence results. These findings are important for the future use of Mayenite, 12CaO.7Al2O3 (C12A7), nanoparticles formed from toxic cement dust recycling.

Design and synthesis of organic rectorite-based composite nanofiber membrane with enhanced adsorption performance for bisphenol A.

Nowadays, most of mineral-based adsorbents are powder form, which makes them inconvenient to collect and always easy to cause secondary pollution. In this work, an organic rectorite composite nanofiber membrane (SRt-PAN) was designed and prepared by electrospinning technique. The as-received composite nanofiber membranes were characterized by XRD and SEM analysis, proving the homodisperse and existence of SRt in PAN nanofiber membrane. A series of batch experiments for BPA adsorption were carried out to investigate the effect of different adsorption parameters, including initial concentration, pH, and temperature of pollutant solution. The influences of modifier dosage and adsorbent dosage on the adsorption performance were investigated as well. On the basis of the experiment results, the adsorption process could be well described by the pseudo-second-order model and the Langmuir isotherm. In addition, the thermodynamic parameters indicate that this adsorption process is exothermic and spontaneous. Moreover, compared with pure nanofiber membranes and organic rectorite powders, the resultant SRt-PAN adsorbents exhibited higher adsorption capacity, superior reusability, and adsorption stability. It is indicated that the hydrophobicity surface of organic rectorite should be the key factor to not only the intimate interfacial combination between the mineral and PAN, but also the enhancement of BPA adsorption capacity.

Quantitative trait loci for morphometric and mineral composition traits of the tibia bone in a broiler × layer cross.

Many economic losses occur in the poultry industry due to leg fragility. Knowing the genomic regions that influence traits associated with the growth and composition of the leg's bone can help to improve the selection process leading to increased leg resistance to fracture. The present study aimed to map quantitative trait loci (QTL) for mineral composition and morphometric traits of the tibia in 478 animals from an F2 broiler × layer cross. The measurement of weight, length and width of Tibia was carried out at 42 days of age. Ash, dry matter, levels of calcium (Ca), phosphorus (P), magnesium (Mg), Zinc (Zn) and Calcium:Phosphorus (Ca:P) ratio were also recorded. The population was genotyped for 128 microsatellite markers and one single nucleotide polymorphism, covering 2630 cM of the chicken genome. A likelihood ratio test was performed to find QTLs. Additive and dominance effects of the QTLs were included in the model. In the chromosomes 2 (GGA2), 6 (GGA6), 8 (GGA8), 24 (GGA24) and 26 (GGA26) some suggestive QTLs (P<0.00276) were mapped for tibia weight (GGA2 and GGA26), ash percentage (GGA2 and GGA6), dry matter percentage (GGA2), Ca (GGA8 and GGA24) and Ca:P ratio (GGA8), many of which are close to genes already identified as good candidates for those traits. The suggestive QTL on GGA2 has a pleiotropic effect on ash percentage, dry matter and bone weight, whereas in the GGA8 there seems to be two QTLs, one for Ca and another for Ca:P ratio. Thus, this study identified at least five genomic regions, in different chromosomes, that can be targeted for further research to identify potential mutations influencing the development and composition of leg bones in Gallus gallus.

Regulation of in vitro calcium phosphate mineralization by combinatorially selected hydroxyapatite-binding peptides.

We report selection and characterization of hydroxyapatite-binding heptapeptides from a peptide-phage library and demonstrate the effects of two peptides, with different binding affinities and structural properties, on the mineralization of calcium phosphate mineral. In vitro mineralization studies carried out using one strong- and one weak-binding peptide, HABP1 and HABP2, respectively, revealed that the former exhibited a drastic outcome on mineralization kinetics and particle morphology. Strong-binding peptide yielded significantly larger crystals, as observed by electron microscopy, in comparison to those formed in the presence of a weak-binding peptide or in the negative control. Molecular structural studies carried out by circular dichroism revealed that HABP1 and HABP2 differed in their secondary structure and conformational stability. The results indicate that sequence, structure, and molecular stability strongly influence the mineralization activity of these peptides. The implication of the research is that the combinatorially selected short-sequence peptides may be used in the restoration or regeneration of hard tissues through their control over of the formation of calcium phosphate biominerals.

Template-directed control of crystal morphologies.

Biominerals are characterised by unique morphologies, and it is a long-term synthetic goal to reproduce these synthetically. We here apply a range of templating routes to investigate whether a fascinating category of biominerals, the single crystals with complex forms, can be produced using simple synthetic methods. Macroporous crystals with sponge-like morphologies identical to that of sea urchin skeletal plates were produced on templating with a sponge-like polymer membrane. Similarly, patterning of individual crystal faces was achieved from the micrometer to nanometer scale through crystallisation on colloidal particle monolayers and patterned polymer thin films. These experiments demonstrate the versatility of a templating approach to producing single crystals with unique morphologies.

Bioinspired mineralization of inorganics from aqueous media controlled by synthetic polymers.

The formation of inorganic structures in nature is commonly controlled by biogenic macromolecules. The understanding of mineralization phenomena and the nucleation and growth mechanisms involved is still a challenge in science but also of great industrial interest. This article focuses on the formation and mineralization of two archetypical inorganic materials: zinc oxide and amorphous calcium carbonate (ACC). Zinc oxide is selected as a model compound to investigate the role that polymers play in mineralization. Most of the effort has been devoted to the investigation of the effects of double-hydrophilic block and graft copolymers. Recent work has demonstrated that latex particles synthesized by miniemulsion polymerization, properly functionalized by various chemical groups, have similar effects to conventional block copolymers and are excellently suited for morphology control of ZnO crystals. Latex particles might serve as analogues of natural proteins in biomineralization. The second example presented, ACC, addresses the issue of whether this amorphous phase is an intermediate in the biomineralization of calcite, vaterite, or aragonite. Conditions under which amorphous calcium carbonate can be obtained as nanometer-sized spheres as a consequence of a liquid-liquid phase segregation are presented. Addition of specific block copolymers allows control of the particle size from the micrometer to the submicrometer length scale. The physical properties of novel materials synthesized from concentrated solution and their potential applications as a filler of polymers are also discussed.

A Raman spectroscopic study of synthetic giniite.

The mineral giniite has been synthesised and characterised by XRD, SEM and Raman and infrared spectroscopy. SEM images of the olive-green giniite display a very unusual image of pseudo-spheres with roughened surfaces of around 1-10microm in size. The face to face contact of the spheres suggests that the spheres are colloidal and carry a surface charge. Raman spectroscopy proves the (PO4)3- units are reduced in symmetry and in all probability more than one type of phosphate unit is found in the structure. Raman bands at 77K are observed at 3380 and 3186cm-1 with an additional sharp band at 3100cm-1. The first two bands are assigned to water stretching vibrations and the latter to an OH stretching band. Intense Raman bands observed at 396, 346 and 234cm-1are attributed to the FeO stretching vibrations. The giniite phosphate units are characterised by two Raman bands at 1023 and 948cm-1 assigned to symmetric stretching mode of the (PO4)3- units. A complex band is observed at 460.5cm-1 with additional components at 486.8 and 445.7cm-1 attributed to the nu(2) bending modes suggesting a reduction of symmetry of the (PO4)3- units.